Array 1 250721-252457 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLKH01000003.1 Escherichia coli strain MOD1-EC5624 MOD1-EC5624_3_length_382802_cov_32.703, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 250721 29 96.6 32 .A........................... TTGCCCGGCGCACAGGTGCACATCCCGGAAAA 250782 29 100.0 32 ............................. CCTCAACTGGCGTTTGAGTTGTAGATGTCTGA 250843 29 100.0 32 ............................. CTGCCGACAAATCCCTGCTCGTTGGCTACTCG 250904 29 100.0 32 ............................. AATAGTGCCTAGGTTGTACCATTTTTGATGTT 250965 29 100.0 32 ............................. ATTCAGAAAATTTAAAAATGTGGGCGCGTGGC 251026 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 251087 29 100.0 32 ............................. GTGTATGCGGGTGTGTGTGGCTGCCAGTGCCG 251148 29 100.0 32 ............................. GCTCATTTTCCGGTGAAGTGAAAGCGTCTACC 251209 29 100.0 32 ............................. GGGGCGAGGTGATCTTTCAATAACAATACAGC 251270 29 100.0 32 ............................. AGGTTCAGGAGAGTGCAATGCGTATCACAACT 251331 29 100.0 32 ............................. CCGATTCCGCTGGTCTTGCGAACTCCCCTGAA 251392 29 100.0 32 ............................. AAATCATGGATTGATGAAGATGGTTATGAAAT 251453 29 100.0 32 ............................. GCGTCATTTTTATATTCGTTATCTCCGGAGCA 251514 29 100.0 32 ............................. TGAGCAGATGCATATAGCGCCCGGGGTGTATG 251575 29 100.0 32 ............................. CTTTCGCGCATATGCTCGATCACATAACCGAA 251636 29 100.0 32 ............................. TGAGAAAGAATTATTCTCTGACATGGGGCCGC 251697 29 100.0 32 ............................. GCGCGGCCTGTCTTATTCCGTCTAATACCCCT 251758 29 100.0 32 ............................. CGTACGCGATGTGGATCAGTGCCGCGTTCTCT 251819 29 100.0 32 ............................. GCGAACTCGTAATTTATCAGGCTCGAATTCAG 251880 29 100.0 32 ............................. GCGCTCACGTTTAGTGCCAGAGCCAGGCGGCG 251941 29 100.0 32 ............................. TCGCTGGCTACCCTGGGGGTATTCAGTGACTA 252002 29 96.6 32 ............................T TGAGATGCCGTTTGCCGTTTTTCTGTTTTTTC 252063 29 100.0 32 ............................. TTCTCAGGCTTTACCCACTCTTTTACAGTGTC 252124 29 96.6 32 ............................A GAAGTTCGGCATTGCCCGCAAAGATTTGTCAC 252185 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 252246 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 252307 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 252368 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 252429 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 278157-279467 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLKH01000003.1 Escherichia coli strain MOD1-EC5624 MOD1-EC5624_3_length_382802_cov_32.703, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 278157 29 96.6 32 ............................T TTCTACCCTGTTCGGCTACCAGCAGCGACTGC 278218 29 100.0 32 ............................. GCCACGATCGGCGATCTGGTTTACGCGTTGCT 278279 29 96.6 32 ............................T TTCTACCCTGTTCGGCTACCAGCAGCGACTGC 278340 29 100.0 32 ............................. GCCACGATCGGCGATCTGGTTTACGCGTTGCT 278401 29 100.0 33 ............................. TTTTTGCACCAGAACGGATCGCGGTTTGCACGC 278463 29 100.0 32 ............................. AAATTTGCCGGTAATCGGGTGCTTGTATCGCC 278524 29 100.0 32 ............................. ATCAGACCGTTTTTGAAGTGGGCAGGCGGAAA 278585 29 96.6 32 .....T....................... TCTTTCGTCAATTTTGGCGCTATAAACTTCAT 278646 29 100.0 32 ............................. CGCCCATCAGCACCGCGCAGGATCAGGAAACC 278707 29 100.0 32 ............................. CGGCCCGCGCGGCCGCAATTGAGGCCGGTTTG 278768 29 100.0 32 ............................. CCACACACATCGAGCTGGTGGGGCTTAATGCT 278829 29 100.0 32 ............................. TTTTCCACCAGTCGCAGTGGGAGCAAAAACTG 278890 29 100.0 32 ............................. CGCTGCTGTTCAGCGGCAATCAGATCAGAACC 278951 29 100.0 32 ............................. GGAATCCACCGCGTCGGCTATGGCCTGATAGT 279012 29 100.0 32 ............................. ATTAATAGTTTTTTCATTTGTTGCCCTTTAGA 279073 29 100.0 32 ............................. CCGGTGATTGCCTGCCCGTCGTGATACTGCGA 279134 29 100.0 32 ............................. ATTCTTACCCCGGAAGCTGAAAAGCTTATTAA 279195 29 100.0 32 ............................. ACCGCCTATTACAACGAAATCGATCCATTCGC 279256 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 279317 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 279378 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 279439 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //