Array 1 113308-113482 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACP01000019.1 Streptomyces sp. SceaMP-e96 YWIDRAFT_scaffold_17.18_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================ ================== 113308 31 100.0 44 ............................... GACCGAGCCCGAGGACACGGGCGGTGACGGCGGCACGTACTCCG 113383 31 96.8 38 ...................C........... GACGTCCGAGCCGCCGACCTCTCAGCCGCCGACCTCTC 113452 31 93.5 0 .........................G..C.. | ========== ====== ====== ====== =============================== ============================================ ================== 3 31 96.8 42 AGCCGCCGACGGAGGAGCCGAGCACTCCGGA # Left flank : GGTGGCGCCGTCCCAGGTCGCCGACGCGGTGCCGCCGGAGCTGGACGGCCTGGTCATGCGGTCGCTGGCGAAGGACCCCGACGACCGCTTCCAGTCCGCCGAGGAGATGCGCGGCCTGGTCCAGTACTCGCTGCAGATGCTGCACGAGCAGGGCGGCCACACCGGCACCTGGAGCACCGGCCCGGTCGCCATGCACGAGGGCGGGCTCACCCCGTCGATGGGCACCGCGGCCACCACGGCGCTGCCGCACCCCGACGCCGGCCAGACCACGGCGCAGCCGATCCTGACGCCCGGTAGGCGCGACGACGACGGCGGTTTCGACGGCGGGCCCCGGCCGTCCAAGGGCGGCCGCGGCAAGATCTGGCTGATCGCGGCGCTGGCGGTGATCGCCATTGCGGTGGGTGTCGCCTTCGCGCTGCAGAACACCGGCGGCCAGGACCAGAAGCACGAGACCCCCACCACGCAGTCGCCTTCGCCGTCGCAGGACGACAAGACGAGCG # Right flank : AAGAGCCGTCGGACGAGCCCACCGATCCCACCGAGCCCACGGACCCCACGGGCGGGACCGACGACGGTGGCGCGGGCACCGGTGGCCCGGACAGCGGCTTGACGTCGGGCGCGACCGGCTGACGGGTGCCCCGCTCCCCGTTCAGCGGGTGAACGCGTTCCGTACGGCCCGGTACTCGCGGGTCCACCACACGGCCAGGGCGGCCGCCGCCGGGAACTGAGGATCGGTGCGGCGGTCGCCCAGCTGGTAGCGCCAGGTGAGCATCCAGAAGTCGTTCAGCCGCTCCCACCACACCCGGTGGACGGCCGCCGCGAGTTCCTCGGCACCGGCTCCGCAGGCGCTGCGGTAGGCGCCCGCGTACGCCGCCACCTTGGCCAGGTCCAGGGTGCCGCAGGGGCGTACGAAGAAGATCGCGGCGGCGCGTACCGCCTCCTCGGCGCGCGGCTGGACGCCCAGCCGGTCCCAGTCGACGATCGCGGTCGGTTCCGTGCCCCGGTAGA # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCGCCGACGGAGGAGCCGAGCACTCCGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 112658-113599 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACP01000023.1 Streptomyces sp. SceaMP-e96 YWIDRAFT_scaffold_20.21_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 112658 29 100.0 32 ............................. GGGCAGGGCACGGCGACGTCGAAGCCGACGTC 112719 29 100.0 32 ............................. AACGTCCACATCTGCCCGTGGTGCATGAGCCG 112780 29 100.0 32 ............................. TCCTGCTGGAGGGAACGGGCAACGGGCAGCGT 112841 29 100.0 32 ............................. GGAACCTGGACGACGAACAGCCTCACCTTCAA 112902 29 100.0 33 ............................. CAGACCGTCCCCGCGATGACCTGACGTCCCGTG 112964 29 96.6 32 .................A........... CGACACGAGATCGCCGCCACGTCCATCCTCGG 113025 29 96.6 32 .................A........... CGACACGAGATCGCCGCCACGTCCATCCTCGG 113086 29 96.6 32 .................A........... CGACACGAGATCGCCGCCACGTCCATCCTCGG 113147 29 100.0 32 ............................. AGATCTACGAGTCTCGCCGCGCGGACTGAGGA 113208 29 100.0 29 ............................. GACGGGCTCGGCGTCCGGTCCGACGACCG 113266 29 100.0 32 ............................. ACGCACCGTCCCACTTTCAGGGACGCCGCAGC 113327 29 100.0 32 ............................. CAGACTGTGAACCTGGACCAGTTGGGCGGGGA 113388 29 100.0 32 ............................. ATGCGGAAGAAGCTGGGTGAGTCCTTCGCTGT 113449 29 96.6 33 .............A............... TTCTCCCGTGGACCACCCGGATGCCCGGGTAGG 113511 29 75.9 31 C..C.........AA.T....GC...... GACAGGACATGGACCGGTGGGCAACCGCCGC 113571 29 86.2 0 C..C........G............C... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 96.8 32 GTGGTCCCCGCGCCTGCGGGGTTGGTCCC # Left flank : TGACCAGCGCGTTCATGACTTTCAGCGCTGTCAGGGCCTTCCCTGCTTACCTGGCGGAAAGTCCCCGGAATGTCCTGGGAAAGGCTTGAAAGTCCCCGAAAAGTCCCCGGGTTGTCCCCGGCCGGCGAAGGCCTCAAGGGAAGCCATCACTTATTGCGGTAGGCGGAACAGCTCCCCGGCAGCACCTCCATCAGCCCCGCTGCAGAGGGCCCACCGTAGGCGGGCGGCCAAGCTGAATCGGGCATGGCGCCCCCCATGGCGCCAGCTCCATCCCGGCAAGAGCCGTCGTGACGGATCGATAGAGAGCCCAGTATTAGCCTGGGGACACCGACATTACATGTACCAGCGGTACCACGCTGGAGCGGTACCCCAGGCCACAATGGCTCCGCGGACCACTGCCGCCCCGCCGGACCTGCAACCCACTCGAAGGCCAGATGTCCGAATCGCTAAAACTAAGTAAAAACAACTCATCGTCTTCCTGAAACCGCAGCTCACGACCT # Right flank : CTGGATAAGGGACCTGGGCTGAATGTTCCCCGCCTCTGCGGGGCTTCTTGGGCTGACTCGGGCCCATCGCTCGTGACGCGGGTGGTGGGCCCGAGTGCACCTCAGGTGGCGGAAAGCTTGGAACTGGATGAGGGACCTCGGTCAGCGAGCTTCGCGCAACGGGAAATCAGAAAGCCCTGCGGCTGATACACACAGCGCCTTAGGGTGCCCCGAGAGGGGACCGAGCCGGCTGCGCTTCCTGGCAGATGACAGCCGACTCAGCCCGGTCTCCTCTGTCCTGCAGTCCCAGCTAGAGGAGCATGTACATGTTATCTACAGCAGTGCAGGTCTTGCTGGCCTTGCTCACCGCCAGCGATGCGCCTTCAGTGATCGACACTTGGATCCGGGGCGGAGCCTTGGTCGTGGTGATTGTCGTAGTAGTCGTCGCGGTGACGCGACCGGGAGGGTCGCGGCTGGCGCGTGCCGGTTTGACGCACCGTCCCCGAGGTCGGTGTGTTCGG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCCTGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123938-124512 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACP01000023.1 Streptomyces sp. SceaMP-e96 YWIDRAFT_scaffold_20.21_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 123938 29 100.0 32 ............................. AGTGCCGGTCAGGGCTGACTGCACCAGCACGG 123999 29 100.0 32 ............................. GAGGACGGGGACCTGGCGCTGCGCCGCGCGCT 124060 29 100.0 32 ............................. GTAGGGCGCGATTCATCGGCGTGCTTCCTTTC 124121 29 100.0 32 ............................. GTGCATCCGACGGATGCGGGTCATGTGTATCT 124182 29 100.0 32 ............................. GCTGGATGGAACAAGGTCGTGCAGTACGCGGA 124243 29 96.6 32 .........................C... GGCGAGACGAGCCTGTGGAACGTAGGCGATGC 124304 29 100.0 32 ............................. GAATGCGCCCGTGATCTGCTGAAGTGCCTTTT 124365 29 89.7 91 ..............T.....T....A... ACGCCGCCATCAGTGGAGACATCCATGTCAGGGTGGCTCCCCGCCGGCGGGGTTGGTCCTCGACGAGCACAGCGCCCCGATGAAGCATCGG 124484 29 86.2 0 G..G..........T..A........... | ========== ====== ====== ====== ============================= =========================================================================================== ================== 9 29 96.9 40 CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Left flank : ATCATCCTCACCAACTGCCCAGTCGGCCTACGTGGCTTCCTCACTCGCTGGCTCCTGGAGATCTCCCCAGGCGTCTTCCTCGGCAGCCCCTCAGCGCGCGTTCGCAAGGCTCTGTGGACAGAAGTCCGCCAGTACGCCGGGCAAGGACGCGCCCTGATCGCCTACCAGACCAACGGCGAACAGGGCTACACCTTCGAAACCCACGACCATGCATGGCACCCCACCGACCACGAGGGCCTGACCCTGATCCACCGCCCCAACCGGCGAGCCCCAAAAAAAGACAACAAACACCTGATAGCTCCCGTTCCGGCTGGAGCAAGGCGTCGAAGCGGCGGAGGTTCGGCAACAGGTGAACCCCGAGAGACACGATGTACCGCTACGCGAAGTAGTGGGACTCTGCTGCTCCACCGCAGCCACCCTCCACCACAAGGTCGATATGTCCGAATTGCTGAAAGTGGGTAAACAGCTCCCCGCCTTCCTGAAACCGCAGCTCACGGCCT # Right flank : CGGCATGGGCCTGTGCGTCATGCGGACACGTGCTGGCTGGTCGCTGAAGATCTGGAGTCGGCCCGCCATGCACCGCTTCGACCGGGCGCATGACAGTGCTCGACGAGCCAGCCGGACGACGGCGGGCACAGAAGTGCGCCATCATGCATGAGGGTCTCGGAATAACGGCCAGCGTATGGCCGCCAATGGCCGAGGGCTCATCGACCATGACGAGTACGGCAGGCGACTTGAAGCGACGGACGAGGAAATGGCGCGGGATTACGACAGTCAGCTGCTGGAGTCGGTGGCAGTACGCCGCCGCAGGATGCGGGACGCCCTGTTGTTCGGTGCGCAGCGGGGACGTCGCACGGCGGACGAGCGGCTGGGGAAGGTCTTCGCGGGGATCGCAATCACCGCTGTCCTGTGCGCGGGGTGCGTGGGGTGGTCGTTCCTTCAGCACACGCTGGCCACTCAGAAGGCTGAGCAGGAGAAGCAGCAGCGTCAGATGCAGCAGTACGGGC # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.60, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28744-30115 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACP01000041.1 Streptomyces sp. SceaMP-e96 YWIDRAFT_scaffold_37.38_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28744 29 100.0 32 ............................. TTCGACTCCTGCCAGAGCTGGGCGGCCAGCAG 28805 29 100.0 32 ............................. AGCGAGGGGTTGGCCCAGTCCAGCAGCGCCCA 28866 29 100.0 32 ............................. GGCGCGACCGGCGGCGCCTGTCGGGCCAGGTG 28927 29 100.0 32 ............................. AACTGCATGCGCGCGGACAAGGAGCGCCGGAA 28988 29 96.6 32 ............T................ CCGGCAAACAACCCCGACTACGTCTCGGAAGG 29049 29 100.0 32 ............................. AACTGCATGCGCGCGGACAAGGAGCGCCGGAA 29110 29 96.6 32 ............T................ CCGGCAAACAACCCCGACTACGTCTCGGAAGG 29171 29 100.0 33 ............................. TTCGCAGCCGGGCAGGGCCCGGCAGGCCGGCGT 29233 29 100.0 32 ............................. GTCACCGAGTCGATGACCGGCGGACCGGACAT 29294 29 100.0 32 ............................. AGGTCGACGTACTCCTGCCACAGCTGCGCGGC 29355 29 100.0 31 ............................. GACTGGGCCGGGACGCTGACCCGCTGGTGCT 29415 29 100.0 32 ............................. GACCAGGTACATCGGGGACCGAGCCCAGCTCT 29476 29 100.0 32 ............................. GTGCAAGTCGGCCCCGACATGGCGGCCATCGT 29537 29 100.0 32 ............................. GACCAGGTACATCGGGGACCGAGCCCAGCTCT 29598 29 100.0 32 ............................. GTGCAAGTCGGCCCCGACATGGCGGCCATCGT 29659 29 100.0 32 ............................. CGCAGAACGATCGCGGCGCGGTCGAAGGCCTT 29720 29 100.0 33 ............................. GTTGTGGACGGTGACGTACACGTCGTCACCGAG 29782 29 89.7 32 TG.C......................... TCGGCCTCCGGGCTGGAGCCGGTCGGGGTGTC 29843 29 100.0 32 ............................. ACCAGGTCGCCGACGCGCATTTCTCCGGGCTT 29904 29 100.0 32 ............................. AAGGTCAGCTGGAGCTGTTCGCCTGACTGAGG 29965 29 100.0 32 ............................. GGCAGTGGGTTCCGCGCGCCGCGCGCAATCGC 30026 29 100.0 32 ............................. TGGATCGACAGCGTCTTCGTGGGCCGCACCGT 30087 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : AATAGGCCCTGACCAGTGCGTTCGTGACTTTCAGCACTGTCAGGGCCTTCCCTGCTTACCCGGTGGAAAGTCCCCGGAATGTCCCTGGGACAGGCTTGAAAGTCCCCGGGACGTCCCCGGCCGGCGAGGGCCTCAAGGGAAGCCATCCCCTTATTGCGGTAGGCGGAAAAGCTCCCAGGCAACACCTCCATCAGCCCGGCTGCAGAGGGCCCACCGTCGGCGGGCGGCCAAGCCGAATCGGGCATCGCGCCCCCCATGGCGCCAGCTCATTCCCGGAAGAGCCGTCGTGAGGGATCGAGAGAGAGCCCAGTATTAGCCTGGGGACACCGACATCACATGTACCAGTGGTACGACGCCGGAGCGGTACCCCAGGCCACAATGGCTCCGCGGACCACTGCCGCCCCGCCGGACCCGCAACCCACTCGAAGGCCACTATGTCCGAAGCGCTGAAACTAAGTAAAAACAACTCATCGTCTTCCTGAAACCGCAGCTCACGACCT # Right flank : CTGAGTTGGCTTTATTCACGAGTAGTGGGCTCTGGCACACATTCCGTGAAGACGATCAGCGAGACGCCGCCGTTGTCACGCTGTGTGACCTGAGATCTGGGGCGATGAGGAGGAACCGCTTGTGGAGGAGGGGAAGCCTGGCACGGCCGAAGACACCGCGTGGTGTGACGTCGACGGCGCGTAGAGCACCACTCGACTGTCATCGGCGAGGAGGTGGAGCACCACCACCAGACGTCTAGCGGGCTTGCGGTGTGGCCGTGGGCCAGCCTCCGCGTTCAGCGCTGGGCCTGCCGCTGCGGAGCCAAGCGACCAGCGCCGCGACCAGCAGTCCGAGCACTGCTGCACCGGCCGCGAGGCCAACCAGGGGAGCCCCGATGTTCGCGCCGCTTTCTACTTGCGTCCCCATGGTGACCATCCGTCCCGCGGCTCCGGTGATCAGCCCAGCCGCCACCAAGGGCAGCAGGACCGGCCACCAGCGCCGCTCAAGGGTGCCTCTGCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31480-32097 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACP01000041.1 Streptomyces sp. SceaMP-e96 YWIDRAFT_scaffold_37.38_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 31480 29 96.6 32 .........................C... CAGACCAAGCGGTGGGCCCACATGATGGACCT 31541 29 100.0 32 ............................. TTCCTCTCGTACTGCTTGAAGTTGCGCAGTTC 31602 28 93.1 32 ........-................C... CAGACCCTTGGTAGCTTCCTTGAGGCTCTGGC 31662 29 100.0 32 ............................. CCTCGGCGCCTGCATGGTGCTGCCGCCGCCGC 31723 29 100.0 32 ............................. TGTGCTTCATCTGGTGCCGGTGGGCCTGCTGT 31784 29 82.8 32 C..C.......A.CC.............. ACCGCCTACCGGGAACTGTTCGCCCACGTACC 31845 29 79.3 32 C..C.A.....A.CC.............. GCACCCGTGGCCCACCGGCGGTGTGGCTTCTG 31906 29 75.9 0 CC.C.......A.CC......G....... - Deletion [31935] 31935 29 65.5 39 A.....T....CGC.T..AC.....C..T GTTCTGCTCCCCCGCACCCGCGGGGTTGGCGTGCCACTT 32003 29 100.0 37 ............................. GATCAAGCGGGGTAGCCGGTTTCCGATCTTCTCTGCT 32069 29 69.0 0 CCCCC......A.CC..T........... | ========== ====== ====== ====== ============================= ======================================= ================== 11 29 87.5 30 GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : TGCGGCGTACAGGTCGCGGATCCGATCCGCGACCCATCCTTCGGGGTAGACCTCCGGCGTCCCGACCTCATCCGTCTCCTCCACTTCAGCCTCGGGTTCAGCCTGTTCGCCGAGCTGTTGCAGGACGGTGCGGTGCTGGGAGACGACGCGTTCGACGGCCTCGCCGAGGTTGTGCCAGATGTGCCAGCGGTCCGCGCGGTGCTTCGCGTCCGGGGCGCCAACTCGGGCTCCGTCCGTGTACCCGGCAGACGATCTCGACTCCGGGGTGCTAACGCAGCCAGGCGGCGAACGTCTCGCTCTTCCGGTCGGGTAATACCTCGACGGGTTAGCGGGTCTCGCAGTCGATCAAAAGGGCGCCTCCTCACGTATGAAGAACCGCCTGATGCATACCGAGCGTTACCGGCGCACGGGAGCGTGATCGCCTTCACGGAATGTGTGCCAGAGCCTACTTGAAGCGAACGAAGCCACTGAGTCCACACCTGGCCGTCGCCTGCCACACT # Right flank : CATCACCCGTGGCGATGAGGCCTTGGACCTGATCTGCTCGCCGCACGGATGCTCCCTACGTTGACCTCTAGCCGGAGCGTGGAGGTGGCCTGCTCCCTGCGTCCATTGGTGATTGGACGGCCCGCCCTTCCCGGCCCACGGAAAGGGACGAGCGATCGGATTTGGTCAGGGTCTGCGATCGGCCGGTGGGCGGGGCGCTGATACGTCACGATGATCGAGGATGACATTCGTGAGGAGGAGTGGCTGTGGGTGATCACCGTAAGCCTGATCCGGATCCGAGCCAGGGCAAGCCGCCGCCGGGGAACTCCGACGGGAAGGTGCCCGATCCACCGCCTCCGTCAGGGAAGCGGCCGAAGTAGGCGCCCTCGTGTCTGAACTCTGCCAGCTCCAGGGCCGCCTGGCAGACGCCATGGAGGCGAAAGGCCTCTGGCCGGCCGACTCGCCCTGGGTCCGCCACGCCATGGAGGGCGCGCCACGGCATGTCTTCGCCCCGGATCGGG # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:-0.33, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 59-1309 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACP01000054.1 Streptomyces sp. SceaMP-e96 YWIDRAFT_scaffold_49.50_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 59 29 82.8 32 G..G.......G.AT.............. TCGGCTTGGGCGGCGTCGTCGAAGATGGGCGG 120 29 82.8 32 G..G.......G.AT.............. GCACACCGGGGGTTGAGGTGCTGGCAGCCATC 181 29 82.8 32 G..G.......G.AT.............. GCACACCGGGGGTTGAGGTGCTGGCAGCCATC 242 29 82.8 32 G..G.......G.AT.............. ATGCTGGACTCCGCGTTCCGCGGCGCCTTCGT 303 29 79.3 32 G..G.......G.AT.......C...... TGGCCCCGGACACCGCCGCAGACCCTGGTCCT 364 29 82.8 33 G..G.......G.AT.............. ATCGAGGAGGAGGACGGCACCCCGACCCCGGCG 426 29 82.8 32 G..G.......G.AT.............. GTCACCGGCATCGGCGGGCAGGCGTCTGTCTT 487 29 100.0 32 ............................. GAACCTCCCCCCAGCCGTGACCTTCCAGAGCG 548 29 100.0 32 ............................. GACGACGGCGAACCGGACGCCGACGAAGCCAT 609 29 100.0 32 ............................. GAACCCTCCGACGGGCACGGCTGGATCGGCGT 670 29 100.0 32 ............................. AGTGTCCTTGGCGATGCGCTCCCACTTGGCGG 731 29 100.0 32 ............................. CTGATCGCCGGTGGCCCGTACGAGCCAAGTTC 792 29 100.0 33 ............................. GTCGTCAGAGGCCACGGAGCAGGCTGTCCCTCG 854 29 100.0 32 ............................. CCGGCGGCCAGGCCGAGGACGAGCATTCGCAG 915 29 100.0 32 ............................. CTCTGCACCGGACAGCCTCTTGCCAGCGGCCT 976 29 100.0 32 ............................. GTACACGTCGGCCTCGGCGGCCTGCTCCGGCC 1037 29 100.0 32 ............................. GCCAGACCGCGCACCACCTGGCGCCGGGCCCG 1098 29 100.0 32 ............................. ATGGCGGTGAGGTTGTGCACGGTGAGGGCGAG 1159 29 100.0 32 ............................. CATCGTTACGGTTTGTTGGGTCAACTGGGATT 1220 29 100.0 32 ............................. CCGGCCCATTGGCTCGTGCAGCGCTGACGGTT 1281 29 82.8 0 .C................A..G..CG... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 93.3 32 CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Left flank : GTCCCCGCGCATGCGGGGTTGGTCCCTACGCCGGTCTCGTCGCCGCCGCACTGCGCAAG # Right flank : CTTGCTGTACAGGGGAGCAAACCTGAGCCGCTTTCGGGATTCGCACCCCTACGCATTACAAGACCGTGAGCAATCATGTTGCCTGGTGCCACGTGGTGCCGCCTCGTGATGCCCCGTCCAAAGGCATCTGTCCACCGGAGGGCGTCGCCACTCAGCATGTGGTGACACTCCGCTGACACGCTGGCACCACGAAGTCTCGTTCGGTCACCGTAGCTCACGTTGCTTGTCGAGATCTAACAGGCGAGGTCCTGGCGGCGTGGCGCGGGCCGGCGGCGCCTGTTGAGGTGCCTTCGGCGTCCGGCCGGGGGTCGCCGGGCGGCTGTCAGAGCTGCTTCTGGATCAGGTAGAAGGCGAGGCCGATGAGGCCAGCGCCGGTGGCGTAGGCAGCGCCGCGCAGGGCGCTGGAGAGCAGGACGGTGCGGCGGCGGGCGATCCACTGTCGGGTGCGGCGGATTCGCGAGGTCTGGTCCGCGGCGGCGGTGCGGCGGCTACTGTGCATG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Alternate repeat : GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.42 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 249686-249511 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACP01000009.1 Streptomyces sp. SceaMP-e96 YWIDRAFT_scaffold_8.9_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================ ================== 249685 31 100.0 44 ............................... GACCGAGCCCGAGGACACGGGCGGTGACGGCGGCACGTACTCCG 249610 31 96.8 38 ...................C........... GACGTCCGAGCCGCCGACCTCTCAGCCGCCGACCTCTC 249541 31 93.5 0 .........................G..C.. | ========== ====== ====== ====== =============================== ============================================ ================== 3 31 96.8 42 AGCCGCCGACGGAGGAGCCGAGCACTCCGGA # Left flank : GGTGGCGCCGTCCCAGGTCGCCGACGCGGTGCCGCCGGAGCTGGACGGCCTGGTCATGCGGTCGCTGGCGAAGGACCCCGACGACCGCTTCCAGTCCGCCGAGGAGATGCGCGGCCTGGTCCAGTACTCGCTGCAGATGCTGCACGAGCAGGGCGGCCACACCGGCACCTGGAGCACCGGCCCGGTCGCCATGCACGAGGGCGGGCTCACCCCGTCGATGGGCACCGCGGCCACCACGGCGCTGCCGCACCCCGACGCCGGCCAGACCACGGCGCAGCCGATCCTGACGCCCGGTAGGCGCGACGACGACGGCGGTTTCGACGGCGGGCCCCGGCCGTCCAAGGGCGGCCGCGGCAAGATCTGGCTGATCGCGGCGCTGGCGGTGATCGCCATTGCGGTGGGTGTCGCCTTCGCGCTGCAGAACACCGGCGGCCAGGACCAGAAGCACGAGACCCCCACCACGCAGTCGCCTTCGCCGTCGCAGGACGACAAGACGAGCG # Right flank : AGAGCCGTCGGACGAGCCCACCGATCCCACCGAGCCCACGGACCCCACGGGCGGGACCGACGACGGTGGCGCGGGCACCGGTGGCCCGGACAGCGGCTTGACGTCGGGCGCGACCGGCTGACGGGTGCCCCGCTCCCCGTTCAGCGGGTGAACGCGTTCCGTACGGCCCGGTACTCGCGGGTCCACCACACGGCCAGGGCGGCCGCCGCCGGGAACTGAGGATCGGTGCGGCGGTCGCCCAGCTGGTAGCGCCAGGTGAGCATCCAGAAGTCGTTCAGCCGCTCCCACCACACCCGGTGGACGGCCGCCGCGAGTTCCTCGGCACCGGCTCCGCAGGCGCTGCGGTAGGCGCCCGCGTACGCCGCCACCTTGGCCAGGTCCAGGGTGCCGCAGGGGCGTACGAAGAAGATCGCGGCGGCGCGTACCGCCTCCTCGGCGCGCGGCTGGACGCCCAGCCGGTCCCAGTCGACGATCGCGGTCGGTTCCGTGCCCCGGTAGAG # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCGCCGACGGAGGAGCCGAGCACTCCGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 3777-4263 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACP01000099.1 Streptomyces sp. SceaMP-e96 YWIDRAFT_scaffold_94.95_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 3777 29 100.0 32 ............................. GAGGCGGAGATCGCGCACGAGCACAAGCGCCG 3838 29 100.0 32 ............................. GTCACGGTGAAGGCCTGCGCGGGGTTGAGGCT 3899 29 100.0 32 ............................. GTCACGTGACGATGCCGGGAAGGGTGCGGAGG 3960 29 96.6 32 ....................T........ GGCCTCCGCTGCCTCAAGCCGCTCGTTGCGTG 4021 29 100.0 63 ............................. GCCTACGTCACCCACGAGTCCGACGAGGACGCGTGGTCCCCGCGCATGCGGGGTTGGTCCCNG 4113 29 100.0 32 ............................. GCCTACGTCACCCACGAGTCCGACGAGGACGC 4174 29 100.0 32 ............................. GACGTCCCCCGCCCGGGGGACATGTGATGCCG 4235 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================================================== ================== 8 29 99.6 37 GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : CTGATGGACCCGAGGGCTTCGACCTTCCCCACGTGGGATGCCTGGGTGAACGCGATGCAGGCCGGCTCCGCGGCGTTCGCTGCCGCGACCACGGCCGAGGCGCGAGTTCAGTGCCGCATTGCGCACAAGGATCGGATACTCTAGGCCACTGGCCCGCAGTGGTATGTGCACCCGAACGCTTGGCTCACCGCCTTCTACCTGGCCGTGGTGTGCCGGGAACGGGACAGGATCACGGCCCTGTGCCAGGTGCCGCTGTCCCTGCTACGCGAGAACGGTTCTGGCTTCGACGAGTACCACTACGCCTGGATCGACACCCTCCAGGCCTACTGGCTCGGAGGCCCCGACCTCGTCCCGAAGCTGGTGGCCGCGGTCGACGGCACCGACCCGGCGGTCGCCACCGACCCGGAGACGGCAGGCAAGCTGATGTACTCGCCAATGGCGATGTTCCACCGGATCATCCGCAAGGACCATGCCGGCGGGCGTAGGCCCTGACGGCACTC # Right flank : CAACGGCGGCTTCGTCACCACCGAGAAGACCGAGTGGTCCCCGCGCATGCGGGGTTGGTCCCAGCNCGGTGGTCCCCGCGCATGCGGGGTTGGTCCCAACGGCGGCTTCGTCACCACCGAGAAGACCGAGTGGTCCCCGCGCATGCGGGGTTGGTCCCAGCTCAACGGATCCAGGTGATTGACATGCTCGGTGGTCCCCGCGCATGCGGGGTTGGTCCCCCACTCGCCGGGGATCCGGGTTTCAATGACGTGTGGTCCCCGCGCATGCGAGGTTGGTCCCTCGGCTCGAACATCGCGATGAATGCCACAGCTGTGGTCCCCGCGCATGCGGGGTTGGTCCCCGCGGACGTGACCGAGGTGGTGCTCAGGTCGTGTGGTCCCCGCGCATGCGGGGTTGGTCCCACCACCATGAACCTGGCCGCGGGCACCTTCAGGTGGTCCCCGCGCATGCGGGGTTGGTCCCAACCCCGAGGACGTATGGGAGCTGGATTGGGAGTGGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12447-11622 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACP01000071.1 Streptomyces sp. SceaMP-e96 YWIDRAFT_scaffold_66.67_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12446 29 93.1 32 A..T......................... CTCGCCCGCCTTGTACAGAGCCTGCTCCGTGC 12385 29 82.8 32 G..G.......G.AT.............. TACCCCATGCGGTGGCTGCCGAAGGCCCTCGT 12324 29 79.3 33 G..G.......G.AT.............A CGCCACGGAGGGAGCCACCGAGGCGGGGATCGC 12262 29 100.0 32 ............................. GCGGGCGGGTCCCAGGAGATGGAGATGAGGTG 12201 29 100.0 32 ............................. AGCACCCGGCGCCCCAGGTGTTCGGCCGGAGA 12140 29 96.6 32 .........................A... GACGCGGCCTTCATAGCCGCGCCGACGCCCTT 12079 29 96.6 32 ..................A.......... CCCGAGTCGTGGGCGGTGAACGAGTTCAAGCC 12018 29 96.6 32 ..............T.............. GTCAGCCCTCGGCTGCAGGTGCTGCTCTGGGA 11957 29 100.0 33 ............................. TTGTCCACGTGGTAGACCGTGTTGCCTGCCTCG 11895 29 100.0 32 ............................. CTCGAACTGGGCACCGCCGCCCACAAGCTCGT 11834 29 100.0 33 ............................. CTCAACGGTCCCGGATCGTTCTCCGGCACCCTC 11772 29 96.6 32 ................A............ ATCGTCGTAGGGCGCGTGGTGATGGTGACTGG 11711 29 89.7 32 G...........A..............T. AACGACGGGGGCTGGGGCCACGTCGGGCTCTA 11650 29 96.6 0 ........................A.... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 94.8 32 CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Left flank : TCGCCACCAGAAGCGCCGCCCCCTTGGTCTCGTCTCTGGCGGTACGCAGCCCCGCTACCTGTGCGAAGGGCGCGTCCTTGCCGAAGAGGTCGAACAGGTGACGGTGACCGTCAAGGTAAGCATTGAGCTTGTCGCACTGCTCAGGAGAGAAGGCCCCGGCCTTGAACATCGCAACCCACTCAGCGGCATCCCGCGGCCGTCCCAGAGCATCCACGACGATGGGCAGCAACAACTGCCGGAAAATTGCAGGCTTCTGGGTCGGCAGCTCGACAGCGATGTCCTGGAACCGCTCGGCCCCCAGAAGGAGCCGTCGTACACCGACCTCTTCGAAGGCACCAAGCCCTCGGTGCCCCTCCCCCACAACACTGTTCGAGGAGCGTGCGGACAGCCACGCGTCGTCCAGCAAATTACACAACTAGGCTTCCCCCCATGCATCTACGCCATAAGACGCGAGAGGCATCGTTACACAGCAGCCCCCAGTCCCGTCTCCAAATGCCAAA # Right flank : TGGCGGCAGAGTGGGGCCCTGCCCTATCGGCAGCCGCTCCCCACGCCCGCGGCGAGCATCGTCGCCGCTTCCACTGACGACATCATGGCCACAAACGCCCCGAGATCCCGCCCTGCGCCCCCTGGCCGGACTCCACATCGCAGGCATCTTCCTCTGGTCAGCCCGATATTCCAAACGAAACTGCAAGCTTCTCCCACACGTACACGTGCTGTCTGCTCTCACCGCGATGGCCTCCCCGGTACCCCGTCCCACTGCCCGGAATCGGGCTCACGGAGCACGCTTCGACGCTCGTGTCGACCGATCGGGACATGTGCTGGCTGGTCGCTGAAGATCTGGAGTCGGCCCGCCATGCACCGCGTCGGCCGAGAGCATGGCGGTGCCCGACGAGCCAGCCGGACGACGGTGGACACAGAAGTGCGCCATCATGCATGAGGGTCTCGGANTAACGGCCAGCGTATGGCCGCCAATGGCCGAGGGCTCATCGACCATGGCGAGTACGG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 27642-26934 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACP01000071.1 Streptomyces sp. SceaMP-e96 YWIDRAFT_scaffold_66.67_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 27641 29 72.4 32 GA..C.AT..AG.T............... GTCGAACACGCCGGCTGCGGCGGCGACGTACT 27580 29 100.0 32 ............................. CTGTCGTACCGGTCGGGGCCCTCCCCGGCGGT 27519 29 100.0 32 ............................. AGACACCAGCCGTTTCCCCGGAGGCCGCAGCG 27458 29 79.3 40 G..G.......G.AT......C....... GGTGGATCCGCCGCTCGAGTCTCTGCTCGGAGCGACACGC 27389 29 82.8 32 G..G.........AT..........C... GAGCCCTCGCGGAACGCGATCTTGCCGTGGTG 27328 29 79.3 32 G..G.......G.AT..........C... TGGGTCGCGCTGTGGGCACGGCCCCGGGCCTT 27267 29 79.3 32 G..G.......G.AT..........C... TGGGTCGCGCTGTGGGCACGGCCCCGGGCCTT 27206 29 82.8 32 G..G.......G.AT.............. GCGGTCATGAACGCCAACCCCGTGATCTTGAT 27145 29 72.4 32 G..G.......GGAT.........A.A.. AGTGCCCCGGCATACCCGCTGTGCCCCTTCTG 27084 29 96.6 32 ..................A.......... GCGGACACCATCCGCGTGACCCGTCTCAACCG 27023 29 100.0 32 ............................. TGGCCGACGTCGTTCCGGGCGGCCTTGAGGAG 26962 29 82.8 0 A..G.......G.AT.............. | ========== ====== ====== ====== ============================= ======================================== ================== 12 29 85.6 33 CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Left flank : GCTGCGGCGACCGCGAGAGCCTCGCGCTCGTACCCGTCGCGCGTGTACATCGGAGTAATTTCGCGAGTGGTCATGCTGTACCAGGGGGAGTTGAGTTCGTTCTCCTTGCGCTCGTCAGCGTTCTTTGACGCCTTGCCCGGGTCGGCGCGCCAGCGGGTCTTCCACTGTCCGTGGCGCTTCTTGCCGTAGTTGCGGGGCTCGGTGAACAGGAACCACGGATGCCCCTCGGGCCGGTCTTCCGGGTAGTAGAGGTCGCTGGAGGTCTTGAGCGGCTTGGTGGTGCCGTTCTTCAGCTTCTCAATGACGGAGACGAGTCGTGGCATCTCGGCCTGCGCGCAATTCATGCGGATGATGCTGACGGGCTTCCAGGAGGCGGGCAGGCCGCTTCCTGGAAGCCACAGGCGGGGGTCCTCCAGGTCAGGGCTGAGGCCCTGCTTGTTGTTGTGCAGGCCCGGCCACTCGCGGCGGCTGGCGTGGCCGTCGATCATCAGGGCGTACGG # Right flank : TGGACGGCGTCCCGCGCGACGCCCCGCCCGCACCGCGCCCCCGTCTCCTGTTCCGGGCCGACGCGGAAGCGTTCCGGCACACCCTGGTCCGGCTACCAGCCGTCCGCAGCCCGTGGTTGCGCGAAATCCTCGACAACCTCACCCAGCACATGCGCACCGGCCTCTTCTAGCCAGTCGGCAGAACGCGCCGACGCCTAGCCTCCGGCCGATCCGGTGACCCTGCTGCCGCGAGCGAACCGTGCCGGATAGTGGTGCCTCCCGAGCAGCCCTGAACAAACCTCGCGGACTCCGGCTTTCCGGTCCGATGCAGACCGGCAGTCCGAACGTAAGAGCGGCATCCGGCATCCCATGTCCCTTAAACTGACGGTAAGTGGGGGATGCGAGACGACGAGGAGTACTGTGCGAACAGGTCGAGTCGACGCCTCAGGGACGAACCCAGTGCCGCACCACCGCGAAGCTACCGACCGTGGGCCCGTACCTCAGGGGCTGGCCAAGTCCGC # Questionable array : NO Score: 5.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.34, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Alternate repeat : TGCTCCCCGCACCCGCGGGGTTGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.80,-8.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [18.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //