Array 1 389216-384890 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSUS01000002.1 Bacteroides fragilis strain OM04-9BH OM04-9BH.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 389215 29 100.0 34 ............................. TAATTAATTGAACATGAAACGAAAGTATTTCCGT 389152 29 100.0 34 ............................. ATGTATGTTATGAATAGGGATGGTTTTACATTGT 389089 29 100.0 38 ............................. ACCGTCAAACACACGACTCAATTTATCAAATATCTCGC 389022 29 100.0 37 ............................. CGTTTCTACGAGGATGTTGCGGGCTATCTGAGGGACT 388956 29 100.0 36 ............................. CCTCACATGAAAGCGGCTAAATTACTGGTTATCAGT 388891 29 100.0 34 ............................. TGCTTATAGCCTCTCGTTTCGTTATACCGTATTT 388828 29 100.0 35 ............................. AATATCTCAGCACCGTATTTTTTAATCAACCAGTC 388764 29 100.0 36 ............................. TTTCGATGGAGAAAGATAAATCTGAAATGTTGAAAG 388699 29 100.0 34 ............................. ATCTTTATTAATAATCTCGGTAAACTGTCTTTGT 388636 29 100.0 35 ............................. AACGGAACTCAATACAATTTGGCAAGAAAACGATA 388572 29 100.0 34 ............................. TTCATCTCTGAGTAATCTATCATATCTAATGGAA 388509 29 100.0 34 ............................. ATCTGATAGGGTGCATATATTCATTTTGTAAGTA 388446 29 100.0 36 ............................. TTTCGATGGAGAAAGATAAATCTGAAATGTTGAAAG 388381 29 100.0 36 ............................. TATTGTTTGTAAAGTGGAAAATCTTATTTGCATATT 388316 29 100.0 34 ............................. CTATCTAAAACTATTTGCTTTGTGGAGGTATATT 388253 29 100.0 35 ............................. ATTACAGCTAATTACTAAGGATAAAAAGCTGTCGG 388189 29 100.0 36 ............................. ATGATTGTTGTTGAGAGGCTGTCAATTAGGGGTGAT 388124 29 100.0 36 ............................. ACCGAAATGGCGTGTAAAGACAAAGACTCTAACAGC 388059 29 100.0 35 ............................. ATGTAATTTCGTGGAGTTTCAAGCCTAATTGGTCG 387995 29 100.0 35 ............................. TTTATAACATAGAGGAAAAACTACGTAGGGACTTG 387931 29 100.0 34 ............................. AACGGAACTCAATACAATTTGGCAAGAAAACGAT 387868 29 100.0 35 ............................. TTGAATACACCTTAACGTAGTCCGACGTTAACTCT 387804 29 100.0 34 ............................. CTTGTGGGAAACTATTTTTATACGTCTACTAAGG 387741 29 100.0 36 ............................. TTCGTCACAGTCAAGTTTCCCGTTGTGATTCGCTGT 387676 29 100.0 35 ............................. TAGATTCCTCACCAGTTACTATCACCCGTTTCTTA 387612 29 100.0 35 ............................. CTGTGACAGGTGTAGGGGGTGAGGTTCAGAAAGAA 387548 29 100.0 36 ............................. AAGGTATAAATCGCCTCCGCAATACGGACAAACATG 387483 29 100.0 37 ............................. CAGCGCAAAACTCGCCTCAGACGACAGACACACCGAA 387417 29 100.0 36 ............................. CTTTGCTTTCTTTGCTGCATATAATGAAGTAGAAGT 387352 29 100.0 35 ............................. ATACATGGAGTTATTTTAAGCATACGTTTGATGTG 387288 29 100.0 35 ............................. GCCATAGTAACCTTTTTGCTTTCAATAACCTTATC 387224 29 100.0 36 ............................. AGAATAAATCTGCACTACGTTGATACAACTGCAGGT 387159 29 100.0 36 ............................. CGACTGGCAGCGTATCAAGTCACCTTCTTGGAAGGT 387094 29 100.0 34 ............................. AAGAGTAACATTCTAAAGGGTGAATACGATCAGC 387031 29 100.0 34 ............................. ACGTAAACGATTTAACTGCAAGGGGTGACTCTAT 386968 29 100.0 36 ............................. GGAATATGTCCTGAAGCTTAAGGACAGCCTGATAAA 386903 29 100.0 34 ............................. ACGAAAAAGACAGGGATGCGGAACTCACGCAAGC 386840 29 100.0 35 ............................. CTCACAACGCTTGCAAGTGGGGTGCATATCACAAT 386776 29 100.0 36 ............................. CAAGGTGAATACCAATTCCTATTTTATACCGGGAAT 386711 29 100.0 34 ............................. ATGATTACATCATGCTGCTGTTCCTCTGTACCCG 386648 29 100.0 35 ............................. GTAATATTGCTTGATATATATTCCCTGTTATAATC 386584 29 100.0 35 ............................. TTGTGATGTTTTTCTCTACTGATTGAATTGCTGTT 386520 29 100.0 36 ............................. ACATTAACAATAGCTGAATTTATATCAGACAAAGAA 386455 29 100.0 37 ............................. ATATTGTTGGCTCTGTTACTAAGTTTGGCTTCTTAAG 386389 29 100.0 34 ............................. ATTTTATAAAGGTTCTTTTGGTGAGGTTCGTTTT 386326 29 100.0 35 ............................. ATATTGTTGGCTCTGTTACTAAGTTTGGCTTCTTA 386262 29 100.0 34 ............................. ATAGCTGCACCTATCATTCCGTAGAAGGCTGGGC 386199 29 100.0 34 ............................. CGAATACCAGCGGCAAAATCAGAAGAAGAACCAT 386136 29 100.0 36 ............................. ATAAGTAGGGAGCAACTCACCTACTTTAGCGGTAAA 386071 29 100.0 34 ............................. CTTTAAAAAAAGTGATTCTTTTGATTCACGATAT 386008 29 100.0 35 ............................. TTCTTTGTATTATGCACCTGAGGAACTTCGGTTGA 385944 29 100.0 35 ............................. ACTTTCATGTTATTGATCGTTTTACTGATCGGTTT 385880 29 100.0 35 ............................. ACGTAGAGGTCGTTAATTGTCTTTAGTTTTTACTC 385816 29 100.0 35 ............................. GCTTATTTATTATAAGAAAAGACGCTTTATTCATG 385752 29 100.0 34 ............................. ATGCAAGCACATCGTTCGACCCGTATTTGTGGTT 385689 29 100.0 37 ............................. ACGAGCTTTAACAGGGTCTTGGGACCAACGATCCATC 385623 29 100.0 34 ............................. TACGAAAATAAACTACTCATTTTTCATCAAATTT 385560 29 100.0 35 ............................. TATTAAACAGGTTTTTTGTCAACCTCTGCAATCAA 385496 29 100.0 34 ............................. AATCGCCAGCTCTTAGAAACAAACTGTCTAAAAC 385433 29 100.0 37 ............................. ACTTAATAAGTCTAAGTATGCGTCTGTGGTTGATGAT 385367 29 100.0 35 ............................. CTGTCGGAGTGATGAAGTGGAACGGTAGCTCAATA 385303 29 100.0 34 ............................. AGTAACGTTCCTGAGAGATGAACTTAAACTTGAT 385240 29 100.0 36 ............................. TAAGTTTCCAGCGTTAAGCAAGATTGACCATCATTT 385175 29 100.0 35 ............................. GACATTACCTTGTGCACCTACCTCGACACGCATGG 385111 29 100.0 35 ............................. TCATATAACCCCGCTCCGGTTGCATAGCCTCCTTC 385047 29 100.0 35 ............................. CTGAGAAAAAAGCAAAATAAAGATAAAATGACAGG 384983 29 86.2 36 ..A......................G.CT ACCAGCTGCTGGTATCTCTTTCTTCATCCACCCATG 384918 29 86.2 0 ..A......................G.CT | ========== ====== ====== ====== ============================= ====================================== ================== 68 29 99.6 35 GTGTTAATTGTACCTTATGGAATTGAAAC # Left flank : CCGTTTAAAATGTATTGGTAAATATGTATGTTATTTTAGTTTATGATTTTGGTGAAAGGAGAGTTTCTAAGATGTTGAGATTATGTCGTCGGTATTTGAATTGGATCCAGAATTCTGTGTTTGAAGGTGAACTCTCGGAAGTACGTTTAAAAGAGCTATTATTATTGGCAAAAGGGTTTATGAATCCCGAAGAAGATTGTATTATCATTTTTAAAGGGGCTACTCAATGCTCTTTGGAGAAGGAAATAGTGGGTAAAGAACTTTCTAACATCGATAATTTTTTGTGAAACGGTTGTCGAAGTGGATCGTTATTGTGAATTATTCAATGATAATGCAACCGAAACGCTCTATGACGTGTTGATACATAGATGTTTAGCGCCTATGTCGCTAACCCATGTTTTTTATATTATTCTTGATCGACGCATTATTTCTAAATAAAAGTATTTTTTCTAAAAAGTATTTGTCTTATTACTAAGTGATTGCGTTGGTTGATGGACAGA # Right flank : AAGGAAGATGTATATTTATAAGATTGGCTTAATAGAATGAATTTTTTTTTCTTGCTAGCATATTCTCTCATTATCTTTTGGGAAATGTTTTTATTAATTCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCCTTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAGACGCTGCTTTTATTGGTAGCTATAGTAGGCTTGAGCTCTTGTGGCGACAAGTATTATTCAGATGATTATTTGCGAAACAGTAATGCAAAGTTATGCGGAAAGACTTGGGTGAATGATTCTGATAAAAATGATGCGGATGAATGGGTGCGCCATACATTGAAGTTTGATGATAGCGGACGGCTGGCAGAAACTTATGCCTATTATCATTTGAATGAAAACCAACCTTACCGGACAGAAACAAATAATCTGACTTGGTCCTGGATAGACGATTCGATGGAAGGAATTGTTTTTGACTATGGCGTAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTAATTGTACCTTATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 137417-137170 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSUS01000006.1 Bacteroides fragilis strain OM04-9BH OM04-9BH.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 137416 36 97.2 35 T................................... CCCCGATGCGTTGTGCGGCATGAAAAATTTTTATC 137345 36 100.0 34 .................................... TTGAAACCAGAAAAGATAAAAACTCTTTGGGAAA 137275 36 100.0 34 .................................... GAAGGCAATTGCTTTTTTTGCCAGCCAATTGTAG 137205 36 86.1 0 ............................C.A.C.GT | ========== ====== ====== ====== ==================================== =================================== ================== 4 36 95.8 35 AATGTAGATCTATTCCAGTATAATAAGGATTAAGAC # Left flank : TCATAGGCATCTTGAAGATTCCCCGCATTCACTCGAAATAGTTTTTTTCTAAATTCTTTTGCGAAAAAAAGAAAAAACTTAGTCATCTGATAATATGAAGATTATTCTATATTAAGAAAAAATAAGTGTAAAAAGAGATGCGCAAATAATAGCTTTTACGTATATTAGCAAATCATTTGCGAAAAAAGGATTGATATGTTATGCGCTCTTTGAAATATTGTTCTATATATCAGCAACTTACGCAACATAGTTTTAGGGTTGTTTTCGAAACTCGCCCACCCCTAAATATCCAACGATTATTTGCGAAAAATGAAGTTTACACAGCATTCTAATTATCAATCATTTAGGTCAAAAAATCACTATTTACACATCAGAATTACAGAAAAAAAGACCTACTTTTGCGAAAAAAGACTTAGATTCGCATCTACTATTCTGGTTTACAACCTATTATGATCACAGACAAATACATTTAAGAATATATAATAGTCTAATAATCAGAG # Right flank : TGGTTCTTCTTCAAATTTGGTGGTAAGCTTTCTTCTACTCATGAATCTAATTCAGTTTTCGGAAGTGTAAGCTCTCGTTTATAGTTGACAAGAAAGCAAGTATCCCGGCTTTCGCCCGAAAAGCCCATTCGTGAGGCGGAGAAGCGAATTTTAGACTAAACCATCTGAAAATCAACATCTTTAAAAAGTAAGATTTCTATCCTCAAAAGCTTTGTTTTAACACAGAGTTAAAGCTTATTCTTTGGATGTAAATAACAAGTTCTTTAAATGCATAAGACTTGTTATTTGCGCACAAGAACCTGACAACCTGAAAAAGGCGTTAACAATGTTAATTGAAGAAAGGTATAAGGATGAAGATACCGGTTCAGACGGTGTAGATTCACTTCCGAAACTTGAGTTATCTGATTCAGCCAGTGTCTGTTTTTTCTTATTAAAGCGTAAGCATTCGGCCTCGTGCGTGTTTCTCTCCAAGTTATAATAAAGTCAAAAGCCAGACGTAT # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATGTAGATCTATTCCAGTATAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //