Array 1 4013703-4011186 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJIW01000001.1 Streptomyces malaysiensis strain F913 SMF9131, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4013702 37 100.0 36 ..................................... GCAGGGACCATCACCCGCGCCGGCGACGGGGGCATG 4013629 37 100.0 36 ..................................... CTTGATGCTGCCGCGAAGCACGTCGCACGCTGAGCA 4013556 37 100.0 36 ..................................... GTCCAGGTCGACCGGCACCTGCTCTGGCGCCACGTT 4013483 37 100.0 37 ..................................... CCGTACGGGACAAAGGCGGTCGTGGCTGTCTCCTGAC 4013409 37 100.0 35 ..................................... TGACCCGTCCTCCTACCCCCCAGCCGGGCCGCCCG 4013337 37 100.0 35 ..................................... ATCGACTGGTACATCCGCGAAGGCACCGCCTGGAT 4013265 37 100.0 35 ..................................... CAGAAGAAGTCCGAGCGGGACTACCGCTGGCACTA 4013193 37 94.6 35 ...................G..G.............. CACCGCTCTTCCTGGAGGTGTCCCTTGATGGGCTG 4013121 37 100.0 37 ..................................... ACTGAAGAGGGCTGGCAGGTCTGTAGGCGCTGCATGG 4013047 37 100.0 35 ..................................... GTTTCGTCCCTCATGTCGAGTAGTCTGCGCCAGCT 4012975 37 100.0 36 ..................................... GAGCAGACCCCGGACAAGAAGACCATCACGGTCGAC 4012902 37 100.0 37 ..................................... ATCGTGTTCGCCGAGCCCATCGGCGGCTACGTCGAGG 4012828 37 100.0 36 ..................................... CCCAGAGCGCCGCCCCCAGCCGCTGCCAGTCCTGCC 4012755 37 100.0 37 ..................................... TTCCCCGAACTCGGCAACCGTACCGGCCTGCTCGCGC 4012681 37 100.0 36 ..................................... GAAGAGGGGGTGAAGGCCCTCGCGCTCAAGGCCGCG 4012608 37 100.0 34 ..................................... CCTCCCCTGGCGAAGGGACAGGGGTCGGGGTGTC 4012537 37 100.0 36 ..................................... CTACGCAGGGCCGGGCTGGACCCGGACGACGTGCAG 4012464 37 100.0 36 ..................................... GGCCTGACCCTCACCGGCACCGGCCAGGTCGCCTGG 4012391 37 97.3 35 ................T.................... AGGTACAGCACCTTGTGCCGGTAGCCAAGCAGGTC 4012319 37 91.9 37 ........................G.G..G....... TTACCGGCCCACCGCGAGGCCCGGCATGATCTCCGCA 4012245 37 97.3 37 ................T.................... CCTGGATCCGTCACATCCGTGTACCGGCCACGGCGTG 4012171 37 94.6 35 ...........G....T.................... GTCAAGTTCTGCATGGCCGAGCAGCCCGGCGCCAA 4012099 37 91.9 36 ........T..............T.....G....... ACGAACTTGGGGTCCGCGCTGTTTCCGGTGTAGCTG 4012026 37 91.9 37 ..........C.....C.......T............ GACGTGTCTGCCAAGACTGTCAGTCGCGTGCTGAAGG 4011952 36 89.2 37 ....T.T.-..........G................. TCCTGCGGAGTGGTCGGGTGGGACACCGAACGCCCGG AA [4011929] 4011877 37 86.5 37 .C..A.............AGG................ AACATGCCCTTGTCCAGCGTGGGCAGGCGTTTGGCGG 4011803 37 94.6 36 ...................G............A.... TTCAGCACCCACTTCGCCGCGTCCCGGCCCGATCTG 4011730 37 94.6 36 ...................G..G.............. CCGCGCGTTGATCAGGGACGGAGACCTGAGTCCCGG 4011657 37 94.6 35 ................A..G................. TACATGGCGCGTCGGCTCGGCGGAGTGAAGTGGGG 4011585 37 100.0 37 ..................................... TGGACGCGCGACATCCCCGAGACCGCCCCACGCGCGG 4011511 36 81.1 39 .....A....CT......-...G.........A..G. TAGATCGACACCGACCAGACCGTCACCATCCGCCGCTAG 4011436 37 89.2 34 C.......T.............G.....C........ ACCTCCTCAACGGACTCCAGTGTGACCCGGCGCG 4011365 37 94.6 33 ........T................A........... CTTGTACGTTCCGAGCTCGCTGGGATGGACGGG 4011295 37 86.5 35 .CA...A...C........C................. TGGGAAGGACACTCCTAGGTGGTGCTGACCACCAA GCT [4011271] 4011220 35 78.4 0 .C........-....G.A.T-.C.........A.... | ========== ====== ====== ====== ===================================== ======================================= ================== 35 37 95.7 36 GTGGCGGTCGTCCTTCGGGACGACCGAGGATCGCAAC # Left flank : CCCCGGCGCTCCACCTCAAGAAGCCTCGACTGCCAGGAACAAGATCCCTTCCCAACGTCATGGATCAGTGCCAGGTACCCTGCGAGCTCACCCGCCCCGAAGATCTCGCCGAACCGCCGCGCCAGCGCCGCCGAACCCCGCAAGTGATCTTCCAGAGAATGCCGGTGCCCCGAAACGGAACTTCGGCTATGCGCGTACAGCGGTGTGACAACCGACATGAACGAATTCCCCCTCGGGACTACTGATCTCCACTCCGCAATCGAGGATGGAAACGTACACAACGCCGCTGACAGGAGCGTAGAAGGCAGCACAGGACAACCCTCACCGCACAGACTGTGATTACGCTGTCATCGTCCGCACCGAAGGCGGTACTTCGGAACCTCTAGTACACGCACGACACGCGGACCGCTCCGAAGGAAGATGCCCGGCTGATGCACTTATGCTCCTCTCGCTTCGCTTCGATCAGAGCACAGATAGGCTGCCTGAGCTGGTCAACCGGC # Right flank : TCTTTGATCCCGTACTGGTGGCTCCGGTACCGGTGGGGCGGTCGCTCTTCGGGACGTGCGGCCCTAGAGAAGGCTGCCCAGGGACCCAAAGGGGTGGCGAAGCTGGGCCGAGGATCGCAACCGCTGGAGCCACATGAGGCCAGGGCCGCCATGTGGCGGTTGACTTCTCGGGTGGCCCTGGGTTCAACCCGGGGGGCGAGATGACGTGTCGATGCTATATAGGTGACATTTTTGAAGTACTTGTCATGGGTAAGGTTAAGTGCGCCACCCGGTTTCGGCACTCAACCAGGGGTGAGTACGCCGTCGTGACGTGAAAGGCGAGAAAGATGTTCCAGGGCACTATCCCGGGCCCCATGCGCGCCATCGTGCACGAGACTGCCGGAAGTTGGCCGCGCGGGGACGTCTACGTCCCGTGCTGCGGAAACTTCACGATCGAGCGCAGCGTGGCGGGCATGGGCTTCGCGCTCCACTCCTCGGACGTCTCGATCTACACGACGGCC # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGTCCTTCGGGACGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGTCCTTCGGGACGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.70,-15.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [49-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4022523-4023128 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJIW01000001.1 Streptomyces malaysiensis strain F913 SMF9131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================================================================== ================== 4022523 37 100.0 37 ..................................... GTCTCATGCCGCTCCGACAGGAGTCGGGCGTTCGCGG 4022597 37 97.3 35 ................G.................... TACACCCGCGGCGAACTCGACGGCCTCGTCGGCAT 4022669 37 100.0 35 ..................................... TACTTCCCCGTGATCGGCAAGCACGACGCCGGCGG 4022741 37 81.1 26 C.......C.......G..A.G..........A...T TCGCTATGCTCGGCGACGACGGCGCG Deletion [4022804] 4022804 36 89.2 36 ...C...-.....G.......G............... TCCCTCACCCCCGGGGCGCATCTGCGCTACCGGCGC C,A,GG,T,A [4022807,4022815,4022817,4022825,4022828] 4022882 36 78.4 36 .......CC.-.T.....A.CG..............T CCTCCTCGACCGGGCAGCGTTCACGCAGTGCGGGGC A [4022899] 4022955 36 89.2 100 ........C.........A..-......A........ GGCCTGACCGCCACTCATAGCCGCCAGCGCGTCCGGGGGTGGTCGCTGCCCGGAGCGGCCAAGGAACAGCGATCGCTGTGCCGGTGGCCGACCGCCGGTG 4023091 36 75.7 0 ...A...CC.....T.G...G......-A.A...... | CG [4023113] ========== ====== ====== ====== ===================================== ==================================================================================================== ================== 8 37 88.9 44 GTGGCGGTTGCCCTCCCGGGTAGCCGAGGATCGCAAC # Left flank : GCCCGCATCCTCGCCCGCCACCTGCGCGGCGAACTCCCCGGCTACCTCCCCTGGACAGCCGCCTGATGGACATCATGCTCACCTACGACGTCGACACCACCAGTCCTGAAGGCCGCCGCCGACTGCGCCGCGTCGCCAAACTCTGCGAAGGCCACGGCCTACGGGTCCAAAAATCCGTCTTCGAAATCGTCACTGACAACAAAACCCTGCTGCAACTCCTCGACCAGCTAGACACCATCATCGACACCAATACCGACAGCATCCGCCTCTACCGCCTTCCCGGAGATGGCTTCGACGACGTCCAGACCCTCGGCACTGCCCAAATACAACCGCACCGCGAAGACCTCGTCCTGTGATCGCCCTCCTCCAGCTTCGGAACCTCAAGTACACGCGCGACGCGCAGATCACACCGAAGCAGAAACCCGATTCCAACCCCTCTTGCCCGGACTCCGTAGACCTCTTGAAGACTGGACGTACGCTGTTCTCGCTGATCAACCAGC # Right flank : CCGAATGATACGTTGCCATGCCTGGCGGGGCGATGAGGCGACGGTCGCTCCGCTAACGGCCAAAATTCACCACGCCGCCGGCAAGCGTCATCAGCGTACAGTCACCTAGACCCAGGACCGTTCAGACCGTGGTGCCCGGCCGGAAATACGTGGCCGGGCACCACGGTCCACGGGAGCATCCCGGACACTCCATGCCATTACATCAGAGTGCCCTGCTCATAGCGGTCTGCCAACGGGCCCAGCTCCCGGACTTCATCTCCCGTGACGTCCTTCCACCACTTAGCGAAAATACGGCGGTGGCACCACTGCGCCGGGTCCATCAGGTCCTCAAAACAGAGCAGGACCAGCCTGTGTTCCATCTCCGCCTCGGCTATCTCCTGTAGCCGCGCCGCGAGCCATGTGGCGCCAAGTCGGTCCAGATCCGCGCGGTAGGCCGACGTGAACTCCGGCAGAGGCTTGGAGAAATACTCTCTCCGAGGCGCCAGTTCCCGCACCACGTG # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTTGCCCTCCCGGGTAGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //