Array 1 19954-21301 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOJW01000110.1 Pseudomonas putida strain MC4-5222 Contig110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 19954 27 100.0 33 ........................... TGTCTTGAATTCGAGTGATGCAGGGGGCTTGGT 20014 27 100.0 33 ........................... TGTATGCATCTGGACACACAGAAAACCCTAATC 20074 27 100.0 33 ........................... TGGTATGGCGTGTCCAGGCATCGAAAGGATTTC 20134 27 100.0 33 ........................... TTTGAGGCCGGGGGACCAGCGGCACTGGTTGAA 20194 27 100.0 33 ........................... TGAGAAAATCCAGGTACGCGAGGCGGGGCTAGA 20254 27 100.0 33 ........................... TAGCACAAGCCCGAGCTGGTCGGCCCCCCATGC 20314 27 100.0 33 ........................... TTGGAAACGCCCCTTTTGCCCTGATTTGCCCCT 20374 27 100.0 34 ........................... TACGCATCAGCGCTGGTAATCAATTCACGTTCAG 20435 27 100.0 33 ........................... TAAATTCCCCGAGTTCGCCCGCAAGTACCTGGA 20495 27 100.0 33 ........................... TGCTGGCGTGGACAAACACTCGGTTCCAGTTGT 20555 27 100.0 32 ........................... TCTACGTCTGCGATTACAAAAACACGGGCGGA 20614 27 100.0 34 ........................... TGATCGGCCGGCCTGGCAATTGACAGCGATATTT 20675 27 100.0 34 ........................... TAGATTGCCCAGCTCGTCGCATCCGCCCTTGTGC 20736 27 100.0 34 ........................... TAGGAAGATGCCACTGCGCTGGCTGCCTTGGGTG 20797 27 100.0 33 ........................... GAGGCTGGCTGCCAAGGGCAAAGCTATCCATTC 20857 27 100.0 33 ........................... GCATAAGCAAGAGAGGTAGTGTGAGCATGTTTT 20917 27 100.0 33 ........................... GTGCGATAGTCAGCGCACTGACGATTGCAAGCA 20977 27 92.6 31 ...........C.............G. CTGCGGAATCGTTGAAGACGGCTGCGAAACT 21035 27 85.2 33 .......A....A.G..C......... GTACGATCTCGGGAATTTGCGTATCTGGGATAC 21095 27 85.2 32 A...........C....C.....T... AACCAGTGGGGCATCGTCATCGGACGGCTTTT A [21117] 21155 27 88.9 33 ..A.........C...........T.. GCATAAGCAGGAAATGGGAGGTGAGCCCTGTTT 21215 27 81.5 31 ..A........C.....C..T.....A TAATCGACCGATCTAGGGGCAGACGGGCTAG GG [21238] 21275 27 85.2 0 .......C.T.......C..T...... | ========== ====== ====== ====== =========================== ================================== ================== 23 27 96.5 33 GTGTGCCGCCGTGTAGGTGGCTTGAAG # Left flank : TCAAAGACGCTTGCGTCATGCCGACAGCTTTTCGCAGTGCCGCGCTCGGCGACGACAGGGCCGAATTTAGGGCCAAGTGCATTGCTGTCTTCGATAAATACCGGGTTTTGGAAACCATGATCGAAACAATTAAGGACGCTTGTGATTGTCATCGCCGTTGATGAGAGCCAAAAGCGTTCGCTGAGGAGATCCAGGCGAGTGTTATCCAAATGGCTCAGCCAAATAGGCTCTCGCACATGGACTGGGAGCCTAAGCCAAGAGGGTATCCAGCAGATGCGCAGCGAGCTTGCAAAGGCAGCGAGTAAAACCAGTGCTGTGGCCGTTTTTGCTGTGCGATCAGGGCGCAGAATGACTCTTTTGTTCTTCTGTGGTGCTCGAACCGATTGGGATGAAAATGGCTGGTTTTCTCATAAATCTATCAGCGCAAAATGCCTCATTGATAGTGACTATTTATTGAAGCAAGTGATTGAAAAATAGAAAGTAATCGCGGATTTATAACA # Right flank : GGCGTATGTTTCGAGTAGCCCAATAAGCTCGAGTCAGCGCCGTTTTTTGGGGTTCAACAGTGTTGCGCGATAAGCCTCGCCCTTCAGGGCAGTGAGGATGTCAACGATACAAAGAATTACTGACCAATAAACACCGCCTCAACTGCCGCCAAGGCTTGGCGCGCCCCCTCAAGCTCCGGCTGTATCAGCGTTAAGCCCCCCAGGTCGTTGCTCATCACCGACACGCAATCCTGAAGCGCTTTTTTGGCCTCAGTGAGAGCAGCCAACAGAGTAGAATCTTTGGCCTCCGCAGTAGTCGATGCCCCTTCTACTACGCTGAGGCGTTTGCTGAGAACGAAGTAGATGTGCGGGAAAACCAACTCCTGGACAACGCCTGCATTCTTCGCTGCTTTGGCTGACGCTTCTTCGACGATAGAAATCAGCTCTGCCTTGTGGATCGGGTTGAATAGTTGCATGTGGTGGCTCCCAGTGATGAATGCCCCCAGCATGCCGACCATTCC # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGCCGCCGTGTAGGTGGCTTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //