Array 1 4197-4704 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKMJ01000154.1 Serratia fonticola strain SF_ES21a-W ES21a-w_S11_L001_R1_001__paired__contig_152, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4197 28 100.0 32 ............................ CATCGCTAACGTGAACTGGGCAGCATTCGATC 4257 28 100.0 32 ............................ AAGCACATCATCAGGATCGACAATTTCACGGC 4317 28 100.0 32 ............................ ACCTTACCATCCCCGCACACGATAGCTTCAAT 4377 28 100.0 32 ............................ ATACCAGAGCAATCGATAGAGTATGCCTCTCT 4437 28 100.0 32 ............................ AGCAGACCTCGAGTGAGTGAACTCAACCACCT 4497 28 100.0 32 ............................ TTGATGCCACCGTCATCTTTCAGAATGTCCAG 4557 28 100.0 32 ............................ TGAAGCAGCTCCACCGATGCCACCAGACAATC 4617 28 96.4 32 ......G..................... TTTCCCGTTTCTGCGAATCCAGCCCCGATTTT 4677 28 96.4 0 ..............G............. | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATGCGCCGCAAACCAGCGCCAAGAGCCTGGAGTTCGACTCGTCTTTTTTGAATGTTGATGATGTACAGTCGATCTATCTCAGCCGTTTCGCCGAAGGTGCCTCCAGGTTGCCCGGAATTTACAAAACCGCGCTGTATGTTAATGGTCAACTGATCCGTAATACCGATATTGAATTCAAGTCTTGGGCCGATAAGTCGGTCTATCCCTGCCTGACCAGCGACATTAATAAAAATATTGCGTACAACTTTTCTCCGCTGAAACTCTTCCGCACGGTGGTATAAAAAACGAGCCACATTCACCCTTGGTAGCTCTGTAATCATCATCTGAAGCTGTATCTATCCATGAGACTGGTAGTATGTGTCGTTCTAGACCCTAATTTTGGGGTGGTTATTAACTAATTGATTTTAAAATAAATTAATGGCGTGAGTGAAAAAAGGTTTTCCAGAGGATTTCAAAGGTTATTGTTTAAGTAACAGAGAATTAGCGCTAGGATGTAACA # Right flank : AAGCCAGCGCGAGCCGGTTTTGAACTTGCGGCAGTTCATTGGCGCACCGCCAACTTTCACCCCAAGATTGTTTTTATTATTAAGCTAACTGATATAAATGATTCATAATTTGTATCTATCTCTATGATTCATCATCAATATAAATTAGATGAAAATCTAACATCAATCACTCTATACAGTGAGCCTATTATGTTAAAACAACAATATCGCGTTGGCATCTGTCATAGGTAATCACGTCTTGGATGACTTTATGGCATAAAGCAGGGATGTTTTCATTTAATGCAAAATCAATTTTCGCCTTCTGATCTAAAAACCATCCTGCATTCAAAGCGTGCGAATCTTTACTACCTGCAGCATTGTCGGATCCTAGTCAACGGCGGCAGGGTGGAATACGTTACGGATGAAGGTAAGCAATCCTTGTATTGGAACATCCCGATCGCTAATACCACAGCTGTAATGTTGGGGACGGGAACTTCTGTTACTCAAGCGGCAATGCGTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 13239-13377 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKMJ01000154.1 Serratia fonticola strain SF_ES21a-W ES21a-w_S11_L001_R1_001__paired__contig_152, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13239 28 100.0 32 ............................ AATTGATTGCTGCCCGGAAGAGTTGTATTCAG 13299 28 100.0 32 ............................ AAATGCTCTATTGCCAAAGCAGAGATGCAATC 13359 19 67.9 0 ...................--------- | ========== ====== ====== ====== ============================ ================================ ================== 3 28 89.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGGTGCTCACTGCCTTTGAGACTTTACCTTGGCGTAAAGGATTACGGGATTACACGGAATGTGGCGAAATTCTGCCGATACCCGCCAATGTAAAATATCGTACAGTGCGACGAGTGCAGCTCAAAAGCAGCGCCGAGAGATTACGTCGTCGCTCTGTTCGCAAGGGATGGGTAACTGAAGAAGAGGCTCGTCTGCGTATTCCTGATGCCGTTGAGAAACGCTCAGCATTGCCATTTATTCGTTTAAAAAGTCTATCCAGCGAGCAAACCTTTTTGTTGTTTATCGAACAAGGCAAGATTTGCGATAACGCAACAGAGGGGGTATTTAGTGCTTATGGTCTAAGCGCAACGGCAACCATCCCGTGGTTTTAACCCTAATTTAATGACTGATTCTAACCTATTGATTTTAAAGGTTGGCGTCAGTCATGTTTAGAAAAGGGTTTTTGGGTGGGGTGGCGGGATTCTATTTTATTAACAGTTAGTTACCGTTAGCATGTAACA # Right flank : | # Questionable array : NO Score: 4.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //