Array 1 246736-246218 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXI01000004.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-3993 NODE_4_length_270346_cov_61.673576, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 246735 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 246674 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 246613 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 246552 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 246491 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 246430 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 246369 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 246308 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 246247 29 93.1 0 ............TC............... | A [246220] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 264603-263050 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXI01000004.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-3993 NODE_4_length_270346_cov_61.673576, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 264602 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 264541 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 264480 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 264419 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 264358 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 264297 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 264236 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 264175 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 264114 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 264053 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 263992 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 263931 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 263870 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 263809 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 263748 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 263687 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 263626 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 263565 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 263504 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 263443 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 263382 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 263321 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 263260 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 263199 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 263138 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 263077 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //