Array 1 19-312 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LNKD01000009.1 Bifidobacterium adolescentis strain 487B Contig_9, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                       	Spacer_Sequence           	Insertion/Deletion
==========	======	======	======	======================================	==========================	==================
        19	    38	 100.0	    26	......................................	TGGTGCTCTGGGGGCTTGGTGCCGCT	
        83	    38	  97.4	    26	.T....................................	ATCCAACTGGTCGGCTCTGTCCATCC	
       147	    38	 100.0	    26	......................................	TGCAAGTACGCCATCGTGTCCGCGAT	
       211	    38	 100.0	    26	......................................	AAGATTCTGTTCGCGGCAGTTTTGGC	
       275	    38	  92.1	     0	GC......................A.............	|                         	
==========	======	======	======	======================================	==========================	==================
         5	    38	  97.9	    26	AGAGTTTGAATAAGAGTTAATACGGCATATATCCAAAC	                          	       

# Left flank :   CAGAAGCCGACGGCGGACA
# Right flank :  CAATTTAAACAATAAAGAATAAGCCGGTGTTTCGCCACTCCCACCGGCGAGGAGCTGTTCACACAAAGACGCGGAGCAGGAGAAGGGTGGAGAGAAAAACACCCGTAGACTCCGCTTTTTGTTTGGCGTTGACATGGCTTGGTTGTTTCCCATCAGTGAGTTCATGTCGTGAACACTGGCATGTATGCGTGAGTCAAGAGGGTGCAAGGCATACGGCTTGCTGACAGTCCTTCATGGATTTCCGGATTGTCGTCCATCGCGCATGTGAGAGTCATGCCATGGATTGTCCCACGAGCTTTAGGGGATAAAAAGTGTGGGACTTTGTGCGGGAGACGAGATTCGAACTCGCAATACTTGCTTGGAAGGCAGGTGTGATGACCTTTTCACTACTCCCGCAGTAAGAGGAATAGAATTGTGATTGTTTACGGGAAAGCACTACATACACGAGATGGTTTTATTACGACCGTTCCAAACTTTTCGGAACGGAAGGCTCGCAACCG

# Questionable array : NO	 Score: 2.68
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.27, 8:0.8, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     AGAGTTTGAATAAGAGTTAATACGGCATATATCCAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:68.42%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [1-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [8.3-53.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.41,0.27   Confidence: LOW] 

# Array family : NA
//


Array 1 1843518-1843810 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LNKD01000001.1 Bifidobacterium adolescentis strain 487B Contig_1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence              	Insertion/Deletion
==========	======	======	======	====================================	=============================	==================
   1843518	    36	 100.0	    28	....................................	GGTACACGAATCCCCACTGGGCGGCGCA 	
   1843582	    36	 100.0	    28	....................................	TCTCCAACATCGAGACAGCGGAATCGAG 	
   1843646	    36	 100.0	    28	....................................	CAACGCAGAAATCCCGCAGGACAGCAAC 	
   1843710	    36	 100.0	    29	....................................	GTCGAGTGTCATGACGACGAAGTGCTTGC	
   1843775	    36	 100.0	     0	....................................	|                            	
==========	======	======	======	====================================	=============================	==================
         5	    36	 100.0	    28	AGTTTGAATAAGAGTTAATACGGCATATATCCAAAC	                             	       

# Left flank :   TCTCCAAAGGGATTAACTATTCCCTCACTGGTTGACGAGTTCTGCTGGCAATACGCGCAATACTGCGAAGGCTGGTTGGACAAACTACCCGTTCCAGTCTTCGGGAAAAGGAAATAAAAATGAAAAGAGACAAGGATAAAGGCATGTGGACGCTAGTCATGTATGACTTACCTATCAAAACAAAAGAGGACGTGGGAGCCGCTAACAGATTCAATCATCTTTTAGCAGACTTAGGTTTCTTCCGAGTGCAATACTCCGTATACGCAAGATATACTCCAACACAATCGGGAGGAAGGTCGGCACTAACCTATATAAAAGCTGGGCTACCTCCCCACGGAAGCGTGAGAGTACTATGCGTGACAGACACGCAATGGGCGGATTCGTTGAGATTCATCGATAAAAAACAGCAAGATACACCGGAACAACCGGGTCTACTGACTCTTTTCGATGATGACGAATAGTCGGAAAACGTTGATATGAAGGCTCTTATTCGGGACTAG
# Right flank :  ATGGGC

# Questionable array : NO	 Score: 3.06
# 	Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     AGTTTGAATAAGAGTTAATACGGCATATATCCAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [58.3-3.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.27,0   Confidence: MEDIUM] 

# Array family : NA
//