Array 1 36075-32572 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKFG01000048.1 Lacticaseibacillus paracasei strain FAM18108 FAM18108_scaffold_0048, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 36074 36 100.0 30 .................................... TCCAGCCCGTGAAGTCGCCCGATAAATTCT 36008 36 100.0 30 .................................... CCTAGTGGGTTTTCTAACTTGAATGCCTAG 35942 36 100.0 30 .................................... TGCAGAATTTAACGCCTACGTTAAATCACT 35876 36 100.0 30 .................................... GGCCAAGGGGGAAATGAAAGCCAGCATTAT 35810 36 100.0 30 .................................... CACCTTTGTAACGCTCGCCGCTAGGCGTCC 35744 36 100.0 30 .................................... TGCAAACCGGCCGTGGCCGGTGAAGCCATT 35678 36 100.0 30 .................................... GCGAGGTCAACGACAGCCTCCGCAGCAGTT 35612 36 100.0 30 .................................... CATTAGGCGTAAAATGGATTGCTGAAACGG 35546 36 100.0 30 .................................... AAATCATCAAGCGAGGGGTTATTTATATGC 35480 36 100.0 30 .................................... CACAAAGGTTGCAACTGCAAAACGTATCAC 35414 36 100.0 30 .................................... GGGTCACACTTACACCGAGTTTCATGATGT 35348 36 100.0 30 .................................... AACCACTCGCGTTTTTTCGCCGTTTCCATA 35282 36 100.0 30 .................................... AGTCGGCAGCGGCAGCAAAGTCATTGATTG 35216 36 100.0 30 .................................... GGTTGACGCGCTGAAACAATCATGTTATAC 35150 36 100.0 30 .................................... GACCACAATACATTGTTATGCCATAGTAAG 35084 36 100.0 30 .................................... CAGCCGCACAGCAGGCATCAGCATCGTTCG 35018 36 100.0 30 .................................... AGTTTCGGTCATTGCTTCAACCAGTCGCTG 34952 36 100.0 30 .................................... CTGCCGGCGTGTATCGTTTGTAGAGTTCGG 34886 36 100.0 30 .................................... AAAGAGAAGCGTTCGCGAGATTTTGGTAAC 34820 36 100.0 30 .................................... TTTTTCCGGCGCGGCGCGTTGCCTTATGGC 34754 36 100.0 30 .................................... TCTTCTCATAGGCACTCGCGATAATTGTGT 34688 36 100.0 30 .................................... GGCAGCAAACCCGGTACCATGATCCAGTGC 34622 36 100.0 30 .................................... GGCAGCAAACCCGGTACCATGATCCAGTGC 34556 36 100.0 30 .................................... ATCTATATGGACTGAACGGAGCACCTTTCA 34490 36 100.0 30 .................................... TGGCGAAGAGCAATATCGTGCATTTCAGCG 34424 36 100.0 30 .................................... CATGGTTGACGTAAACAAGCAGCAAGCGGC 34358 36 97.2 30 ...................C................ TCTTCTCATAGGCACTCGCGATAATTGTGT 34292 36 100.0 30 .................................... GCTGAAGTATCTTGGCAGGAGGCATGGCTA 34226 36 100.0 30 .................................... AGGGGATTTAATTGGGCATGTGGTCACTCG 34160 36 97.2 30 ..............................G..... TGATTCGGTGAAAGTAGGTGCTCGCCTTGT 34094 36 100.0 30 .................................... TGGCGAAGAGCAATATCGTGCATTTCAGCG 34028 36 100.0 30 .................................... CATGGTTGACGTAAACAAGCAGCAAGCGGC 33962 36 97.2 30 ...................C................ TCTTCTCATAGGCACTCGCGATAATTGTGT 33896 36 100.0 30 .................................... GCTGAAGTATCTTGGCAGGAGGCATGGCTA 33830 36 100.0 30 .................................... AGGGGATTTAATTGGGCATGTGGTCACTCG 33764 36 97.2 30 ..............................G..... TGATTCGGTGAAAGTAGGTGCTCGCCTTGT 33698 36 100.0 30 .................................... AAGGACGGGCAGAGTTAGGAAAGAAGCCAT 33632 36 100.0 30 .................................... CAGACGAGCTCGGGATCAGCTACAATGCCT 33566 36 100.0 30 .................................... ACGGGGGTGTACATGCCGACTCTGATGCTA 33500 36 100.0 30 .................................... GTGGATCTTGCCGCGAAGTACCCGCGTTCG 33434 36 97.2 30 .............A...................... CGCACACGACAAAGAAACCTCCTAGGATAA 33368 36 100.0 30 .................................... GAATATCAGGCAACGTGATCGTGCCTTTCT 33302 36 100.0 30 .................................... TCTTCCATCCTTGGCAGCTTGGCCGCTATC 33236 36 100.0 30 .................................... TGGCTGTTATACGTTTATCGAAAAGGGTGA 33170 36 100.0 30 .................................... CTTCCGTGCCTTTTCGCTTCCCGGCAATAC 33104 36 97.2 30 ........................G........... TTGCCGTCAATACTGTTCGCCCACGCGGTG 33038 36 100.0 30 .................................... ATAAAAACAATGGCGATTATCAAACTTGAT 32972 36 100.0 30 .................................... AGATGGCCGTTGTAAATGACGACATCACAG 32906 36 100.0 30 .................................... CAGAATACTACATTGGCGAGCGTGAGGACG 32840 36 97.2 30 ..........................A......... ATTTGAGTAACCAGACTCAGATGTGCTTAT 32774 36 100.0 30 .................................... CCAAGGGCAGGTTTTCAACTGCCTTCTGGA 32708 36 97.2 0 ...................C................ - Deletion [32673] 32672 35 75.0 30 -CAAA.....AT....A.G................. AGGAAATTCGAGTTCTTCCCGCAATTGATG 32607 36 86.1 0 C............................G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 54 36 98.9 29 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAAGATGGGGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATTGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGAAAGCTCGATCAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGTCAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAAACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGGTCTCATTGAGTTCTCAAAAGTGAACCGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTTGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCG # Right flank : AAGCAGCAGTGATACTAAATTGAAGCTAAACTTGTCAAAAAGTGCCTCATCTTTTTGACAAAATAAGGTGTTTTACTATTTATTGTGTGAATCAAGCCCCGATATTTACAAAGCCGAATCTTTCAGCGGCCAACCTAAAAGCCGCTGTCTAAAGCAATATCGTAGTAACCACACACTCTCAAGCGGTGATATATCAATCAAAAACTAAGTGCTATCGACCTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAACGCGAAGGTCAAGATTAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCAAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //