Array 1 81070-84940 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCXS01000001.1 Bifidobacterium pseudocatenulatum strain ca_0067 Scaffold_0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 81070 33 100.0 34 ................................. CGTTGATGATTTTTACGACGTCATGGCGGGGTGT 81137 33 100.0 34 ................................. CACTTACCTCCCTTAGCGGTCTCGATATAACCAG 81204 33 100.0 36 ................................. CACGGCAGCGACCTGAGACGGCGTGACCTCACGCAA 81273 33 100.0 34 ................................. GACAATCGGTTGTTTACCACGTCGTTCACGGTCT 81340 33 100.0 36 ................................. ATGTCATAGGACAGCGGGTAGGCCATCTGGCAGTCG 81409 33 100.0 35 ................................. ATCGAGCACGCCGAGCGCGTTGCGGTTGCCGTCAC 81477 33 100.0 36 ................................. TCAGACTGGACAGAAATGCGCGAACGTCTATCTTGT 81546 33 100.0 35 ................................. CGCGAGGAAATGCGCATGGCGTCCAAAGGAATGCC 81614 33 100.0 34 ................................. CGTGGCGGATTGACTTTTACAAGCGCTAAAACCG 81681 33 100.0 37 ................................. CGTGGTCTCGCCGTTCGGATTAACATACGTGGCGGTG 81751 33 100.0 34 ................................. ATTGGACTGCGTGCCCGAAGATTTGCCGCTGGAC 81818 33 100.0 34 ................................. TCCCCGTGCCCGTATGGGTCAACGCCTACGCAAG 81885 33 100.0 32 ................................. CGGACATGGGCGACACGTAGCGAGTCGCATGA 81950 33 100.0 35 ................................. AGCCAATGTCTGTAGTGCCATGTCTGCTCACCTCC 82018 33 100.0 34 ................................. GATTCGGATGGTGATGTGGTAGACGCCTTTTTCG 82085 33 100.0 36 ................................. AGAATCCACGTTATGTGGACGCCTACACCGGCTTGC 82154 33 100.0 32 ................................. CGTTTAACGAAATCAGGGGCCGCGACGAGCAG 82219 33 100.0 35 ................................. GCCACCAAGCTGCTGAATGGCGAATTGATGGACAT 82287 33 100.0 33 ................................. TGTCTGATTGTGTGAAGCCTAGTGGCATGTTTC 82353 33 100.0 32 ................................. ATATCGGCCAACTGCATGGTCTGCTGGTTGGA 82418 33 97.0 34 .C............................... TTTATCATCGTAGACTACGTTACCGGGCTTGCTA 82485 33 100.0 36 ................................. ATGATGTCGGTGATCGGGTGGATGGTCGCGAAGGAG 82554 33 100.0 33 ................................. ATTGCCAATAGTAGGTCGATTAAGATTAGTGCG 82620 33 100.0 35 ................................. CATTATCAGGCTAGCCGTGCGTTTATCGTCCTTAG 82688 33 100.0 32 ................................. ACCATCCCACCAACTGACACCGCCACCATCGG 82753 33 100.0 35 ................................. ATACCCGCGCCGTTCCAAAACGCCACGTCACCATA 82821 33 100.0 33 ................................. CTTGGAGGATCTTTTTATGGGCATGTGGGGCAG 82887 33 100.0 33 ................................. CAAATCATCCAACGTTTTGTTGATGCGCTTGAA 82953 33 100.0 34 ................................. GTATCGTTAAGGTTCTTGACCGTGTACTGCCCGC 83020 33 100.0 35 ................................. GCGAGGGCAAGGGCGCTGCCGTTGTTGACGGCCAT 83088 33 100.0 33 ................................. GCCACATGCCTAGGAATCCAATGGATGCACGTC 83154 33 93.9 33 CA............................... GGCGTGTAGCGGTTGAGGAAGTAGGTCTGGCCC 83220 33 100.0 34 ................................. GACTGGGGCGACGCGTTCAAGTGTTCGATGAGTT 83287 33 100.0 34 ................................. TGTCCGGGTCGGTGAGTTCGATCTGAGCGGCGGT 83354 33 100.0 34 ................................. GCGAAGCCCTTGCCGTCATCGCCGGTCCAGTCGG 83421 33 100.0 34 ................................. AGCCACACGCAGACACTCAAAGGGCTTGACGAAC 83488 33 100.0 36 ................................. GAGTTGCTCGGTATCGAATGCTCCTTTGCCTCGCAG 83557 33 100.0 34 ................................. CTCGCAAAGGATTGCATCACACCCGTAGGTCTCG 83624 33 100.0 32 ................................. CTTAGATATGGTTCTTGTGCAATCATGTTGCA 83689 33 100.0 36 ................................. GATAAAAGCGCGTTTCTGTGCTGCGGATAGTTGACG 83758 33 100.0 35 ................................. TCAATACCAGCACCCGCCAAGTCCGTGAGTCGTGA 83826 33 100.0 35 ................................. ACAGTCCTCGCCGGTGGCCTGCTCGATTCGCATGG 83894 33 100.0 35 ................................. ACGTTCGGGGTGGAGATTGAGATGGAGTCCGAGCT 83962 33 100.0 34 ................................. GCTGTGGGGGAGTGAGTGTACGACGTGAGCGATA 84029 33 100.0 36 ................................. ACAAGTGGGACGTTGTTCCCACCGGTTCCCATGTGA 84098 33 100.0 35 ................................. CGGTAATTGCAGTGAATTGGAGTGATTTGCAGTGG 84166 33 100.0 33 ................................. GCCGGACCCGTCGTTATCGAAGCGGAATGAGAT 84232 33 100.0 34 ................................. TCGGCCACGTGCAGTCATACAACGACCTGTCATA 84299 33 100.0 35 ................................. CAGGAAGAGGCGAAGGCCGCTTCAGCAGAGCGGCA 84367 33 100.0 36 ................................. GCCCAACCGCTGCCGACGTGCGGCTTGGCCATGATG 84436 33 100.0 33 ................................. AGGTTCACGTCGTAGGTCGGGACCGGGGTTTCG 84502 33 100.0 35 ................................. ATCGAGCACGCCGAGCGCGTTGCTGCCGACGTTAC 84570 33 100.0 34 ................................. TTCCGAATGCTTTGATCTGTGAGGTTTCCAAATG 84637 33 97.0 38 ...T............................. AACGACAAGACCTTCGAGTCGAACGTCGTGTGGACCCG 84708 33 100.0 34 ................................. ACGGTCATCCGCACCGGCATGATGATGCTCGTCA 84775 33 100.0 32 ................................. TTGAGCATGCGGAGCATGGCGTTGGCGGTCGT 84840 33 100.0 35 ................................. ATCGGCCGGCTCTGCCCGAACCTCCCACTGCACTG 84908 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 58 33 99.8 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : TCGGTGTCTGCATCGTTCCGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGACGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCTCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //