Array 1 623-2440 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAME01000028.1 Neisseria meningitidis strain Neisseria meningitidis isolate 99688, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 623 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 689 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 755 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 821 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 887 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 953 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 1019 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 1085 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 1151 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 1217 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 1283 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 1349 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 1415 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 1481 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 1547 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 1613 36 100.0 30 .................................... ACGAGTTTGGCTGCGCCCAAGTCTTTTGCG 1679 36 100.0 30 .................................... CCACTTTCGTGGGAATGACGGGATTTTAGG 1745 36 100.0 30 .................................... CCCATCAGCAGCACCCTGCCTTCAGACGGC 1811 36 100.0 30 .................................... GAAGGTGCGGCGGAAGGCGGCAGCAGCCAT 1877 36 100.0 30 .................................... CGCGTGTAGCTGTATTTGTCGATGGCGGCT 1943 36 100.0 30 .................................... AGCCAGATTTCGGAAAACCCTGCGGGCTTT 2009 36 100.0 30 .................................... GACATCAAACTGGGTATAGCGGTTGTGGCT 2075 36 100.0 30 .................................... ACGCCGAACTCGTCCTTCACGCGGCGGACA 2141 36 100.0 30 .................................... AAATGCGTGTGGGTGTGGTCGTCGATTTGT 2207 36 100.0 30 .................................... AAATTTGAAAATTTCTATATTTTGGTTGTG 2273 36 100.0 30 .................................... AAACCAAAAAACGCATCTTCCTGATGGCGC 2339 36 100.0 30 .................................... CTGCTGTGGGTCAGATAGCCGAGGGCGATG 2405 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //