Array 1 511278-510911 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH376858.1 Selenomonas noxia F0398 supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 511277 33 100.0 33 ................................. ATCGGTGAGTCTTTGGGGAAGATCGGGTTGATG 511211 33 100.0 34 ................................. TTTCTTTAGGTCTTTCATGACCTCTGCGCGCAGG 511144 33 100.0 34 ................................. ATTGCTGACGACAAGAGCGCGACGGAGGTGCTGC 511077 33 100.0 34 ................................. GACAAACGCATCTGCTTCTACACCAGCAAGCTTG 511010 33 100.0 34 ................................. CCTGCAGACGCTCCGAGGGGCGTTTCGGCTTAAT 510943 32 81.8 0 G...T.C....-......G...T.......... | T [510925] ========== ====== ====== ====== ================================= ================================== ================== 6 33 97.0 34 ATCGCGTTCCTATGCGGACGCGCGGATTGAAAT # Left flank : TACAGGGGCTTGCCGCAATATTTTTCATAAGGAGATTAAAATTATGGCGCTTATACTCCACATCAGAATCCATTTAATATTATTGGATCGATACCAAATGCAGCTCGGATTTCTGAATGATTCTTCCCGTATCTTTTGGTACTCTTATGATAACATTTTTACCAACGGCATAGAAATGTGGATAGGTGCACGCTTCTATAAAGGTTGGGGTTATAAACAGTGCGTAGGAAATCACTATTTTAAATGAGTCCGGGAACCTTCCCTAAAGAAGTTAATTGTATGTGTGTGAACTGAGGTGTAAAATAGAAAAAGAGACGATTCAATTCTCATGGGAAAATAGTGAGCGCGAAGATGAAGTGAACAGAATAATAAATATTAAAGCGAGGCATAAAAACTTCGCTGGATCAAGTTCGTGGGAGTGGGCATCAAGAAAAAACACATATGTAGCATATAATTGCTATGATACATCGTAAAAGAGGTCTTTTATATCCACTTTTGCC # Right flank : AGGTTGAGCATGAGCCGCCCGTTGGTCGTCGGTCGCGCTCCTTGCGGAGCGCGTGGATTAAAGCATAATAAAGTATGAAAAATGGCGCTGCCGGTGACGAGCGGCGCCATTTTTGTCGGAATCAAAATTTTGTGTTAGACTATGCCCATAGAAATTGTGATGGGGGTGATGATGTGCTCTGCTTTCAGGGAATATACGCAGATTACGGAACGGGAGACGATGCTGTGCATGCGCTTGCAGATGCCTCGCTTTCTGCGGGGCGCGGGGAAGTGCTCGCGCTGATCGGTCCCTCGGGCTGCGGAAAGTCGACGCTGCTGCGCGTTGGGGCGGGGCTTTTGCATCCCAAGGCGGGAACGGTGCTTGCTGACGGTATTCCCATAGATCAGCGTACATTGCGTATCGGATTTCTGCCGCAGAACTATGGTTTGCTTGCATGGAAAACGGTGCGTGAGAATATCTTGCTCAGCACTGAGGTCAAAGGGGAATGGAACGAAGAGCGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCGTTCCTATGCGGACGCGCGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 1 234024-234541 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH376859.1 Selenomonas noxia F0398 supercont1.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================================= ================== 234024 23 100.0 48 ....................... CCAACGTTCCGGGCGACCTCTTTGGCGATGGAAATTATTTCAAAACCA 234095 23 100.0 48 ....................... CAACCCTAGAGTTATCCCGTCCCGAATATTTCGGAGATTTCAAAACCA 234166 23 100.0 49 ....................... GTGTTTTAAGATCATCTATACTAGGCATTTCATCACTATTTCAAAACCA 234238 23 95.7 48 T...................... CGGCTAAAAGAACGCAAAACAGGGTCATGAAACCAAATTTCAAAACCA 234309 23 100.0 46 ....................... TCACGGTTGATGATGTAGATGTCTGCGTCTGCCCATTTCAAAACCA 234378 23 95.7 47 .....T................. AACTCGTCGAGATCGAAGATCAGCGTGTCTGCCGTATTTCAAAACCA 234448 23 100.0 48 ....................... AATGTAGACGATCAGCAGACACATGATCACCTGACAATTTCAAAACCA 234519 23 87.0 0 ....................GCA | ========== ====== ====== ====== ======================= ================================================= ================== 8 23 97.3 48 CATCCCCGCAAGGGGACGGAAAC # Left flank : TATGCAGGAAGAAGGGCTGACAAAGGACACAAAACTCCATGATGATATGATGGCGGAACTCGGTAAGTTGGGCGACATCAGGATTCTGCGCAACAACGTCGCACATCAAATTACCAACGTCACCAGAGAGAGCTTTCAGAAGGTCACACAGATGACTCCGCCCGCACTCATGGCGATCTTCACACAGATGCTCACCCTTGTCTATGGCGGGAAAATCAAGGAGGCACTCACAACCTACAGCCGCATCAACAGCTGGCTCGAAGAAGCCCTCGAAATCCACGAATAAGGAAGATGTCTGCTCTTTGTGCCGGCGGGATTGTACGTCATGGAGCATTATGCTATACTGCACGTAGAATCTGCGCCGCACCTAGAGCCGCAATGACTGCAAAGAATTTTCGAACAAGAGCTGCTGCGAAGAGGAGGGGAATCTCATTCGCACCGCAAAAGTATTTTTTCATGCAGTCAGCACAAGGCATCCCAACGCAAGGATTTCAAAACCA # Right flank : AGTAAAAAACCTCCCTATGGGGAGGCATATGAAAAAGGTGCCGTATGCAACGACCTGACCCCCAAAGTTAGTTTTCCTAAGTCTAACCTTAACTTTTGGGGGACAGGTCATATTTTTGTCGGTCTTTTTTGTCACAAATTAGCGGCACTGGCGGGATCGTTTGTTCCGATGATTCTTGGGAGTTGTTTGGAGACATTTCCGGCTGTCCCTAAACATAAGGAAATTCCCCTTGTTTTGGCATCACCTGCTGTTATGCTTGCATTCCTCGCTCAAAGGCTTGACGATCTTGTTTGATACATTCTTGAAACTGGCGCACCATATTATCTTGTTGTTGTGAAAAACGCTCTTGATCTTTTCAGAAATGTTCTTGCTCTATTTGTTGTTGAAATATTTGCGCATTCATCCGCTTTTGAGCATGGAAACTTTGTTTTGGTTTTCACGAAACTCATCTCCGTTTTTATTATTATAACAGTCCATTTCATTCTAATACAAAGAAAACA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 50884-48501 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH376862.1 Selenomonas noxia F0398 supercont1.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 50883 31 96.8 36 ..............................T ACGATGGACCGGTATATCCATAATACCGCCCAGAGT 50816 31 96.8 38 ..............................T CATTTCCGCCCGTAGAGGCGGCCCTTGCGCGTCGGAGT 50747 31 96.8 36 ..............................T ACTTCCCGTGGAATATTGATTACCGGGGCCGCTGGT 50680 31 96.8 36 ..............................T ACTATCAGAATGAGTGGTTCTACACAGTCACAAAGT 50613 31 96.8 36 ..............................T ATTTTGATCTTCCTTTCCCCTCTCTCTCTTAGTCGT 50546 31 96.8 36 ..............................T GCCTCGTCATAGAGGCTATATTCTCTGGTGCGCCGT 50479 31 96.8 36 ..............................T TGTCAGCCCGTCTATGAGGTGTGGCTTGCGGAGCGT 50412 31 96.8 35 ..............................T TTCCTGTGCCGCCATTGCCTCGAATGCAGCAAGGT 50346 31 96.8 36 ..............................T ACATATTCAAACATGTTGTGCCTCCTTGCCCTCTGT 50279 31 96.8 37 ..............................T TATGCCTGCCAAGAAGAAAACTACATCCACACCAAGT 50211 31 100.0 37 ............................... CCACTCGACATGATGCGCGTCAAGGATCTCCTGCAGT 50143 31 100.0 35 ............................... AACACGCAGGGGAATGTCGGGATCGGATGCGGTGT 50077 31 100.0 36 ............................... AGCTTATCCCAGTATTCTCCGAACGCGGACTGCTGT 50010 31 100.0 36 ............................... CCGAGCATGGATGCAAATCCTTTTCCGGACTTTGGT 49943 31 100.0 37 ............................... CCTGCTGATCGGGGGATTCGGAGGAACTTGTTCCGGT 49875 31 100.0 38 ............................... TCGGTATCTGTCTGCGGAAATTTGAACAGCGGCGTGGT 49806 31 100.0 37 ............................... AAAAACCGTCGAACCTCGGCTATGAGGATACGGGCGT 49738 31 100.0 36 ............................... CATTTTCGCAGTCTCCTCTCAAACGCTGCTCTCGGT 49671 31 96.8 36 .....................A......... CGTCTAAAAAATATTATACAATGCTTTTGACGGAGT 49604 31 100.0 36 ............................... ATAGAGATACCCATCCGCCATTATGACAACATGCGT 49537 31 100.0 36 ............................... GCGGAGGCTCTTGTAAGGGCCAATCTACCGGAGCGT 49470 31 100.0 35 ............................... TCTTACTTGCTCAGCACCTCTAGGATCTGATACGT 49404 31 100.0 35 ............................... GATTGCTTCTCCCATGGATATTGTCTTGTTTGCGT 49338 31 100.0 36 ............................... TCGTATTTTCCGCCATGCACGATCTGAGTGCCTTGT 49271 31 100.0 36 ............................... TTGGGTCCATACGGCTTATGCGCATATACCCCATGT 49204 31 100.0 40 ............................... GTTGGCATAATCCGTTACGCCGCGCGCAATAGCACGAGGT 49133 31 100.0 35 ............................... TCGTGTTGGACGATCTCGGTGCAGAGAAAATGAGT 49067 31 93.5 36 ........G..T................... GATGATCTTCTCGACATGCACGAGATTATGCTCGGT 49000 31 93.5 36 ........G..T................... TGCCGCATCGTGAAGGACTACACGCCGCTTGATGGT 48933 31 93.5 36 ........G..T................... CTCCGCGACTGGAACGCAGCACACCCCGATGCGCGT 48866 31 93.5 36 ........G..T................... AGCTTCCGGCGGGCACCCGCATTGCTCAGTGCCTGT 48799 31 93.5 36 ........G..T................... GGTCTGTCCGGGACGATGCAGACGCTTATTTGTCGT 48732 31 93.5 37 ........G..T................... GCCATGAGGGAACGGGACAAAGACCGTAAGCCCATGT 48664 31 100.0 36 ............................... TCATTGATGCGGATATTGCGGATGTCCTGCAGTTGT 48597 31 100.0 35 ............................... ATACTATGACAAAATAAAGAGACTGCCCGCGCTGT 48531 31 96.8 0 ..............................T | ========== ====== ====== ====== =============================== ======================================== ================== 36 31 97.8 36 CGCGCCCCACACGGGGCGCGTGGATTGAAAC # Left flank : CTACCCGCCATTTTTGTGGAAGTAGGTACTTGCTATGTATGTTTTGATCACCTATGATATCAGTACAGTTGACGCCGATGGGCGCAGGAGGCTGCGCCAGGTCGCACGAAAATGCAGAGCCTATGGGCAGCGCGTGCAGAAATCTGTCTTTGAGTGTAAGGTGGATCCAACCCAATGTAAGCAATTGGAACTTGCGCTGTTGGATATCATTGACCTGCAGGAAGATAGCCTGCGATTTTACTACCTCGGAAAGGATAAAGGACCGAAAGTAACGCATTATGGTGTTAAAGAGTCCTATGACTTGGAGGCGGCCATCATCATCTGAGCATTTATTACTGAGTGCGAAGGTGAAGTGAACAGAAAACAGAATGTAAAAATATAGGTGCGAGAATCATGCCGCAGGAGGGGCGTGGGTCTCAGGTGCCGAGAAAATCGTATTTGTGGAGGGGAATGCCCATAAATACGTGGCAAAAGGGGGAAGTCGTGACCTCTTTTGCCGT # Right flank : TCATGATGATATACAGCGCCGACATGGAGAAGGGGGGCGCGCCTTTGTAGAGCATGCGGATTGAAGCTTCTTCTCATTATAGAAGATTCTTGTTGTTCACTTTTGTAAAACCCTTGCGTGTCGCTGTCAAACATGCTATACTGACTTTTGTCGCGTGAGCGTATGCTTTTTTGTGTGCGCGCACATAAGAATAACTCTGCCGTCGACGAGATCGGCGGCCAAAGACCAAAGAGGAGGTGATTTCGTGAGATTGTACGAAGTCATATTTATTGTGAAACCGATGGAGGAAGAAGCGACAAACGCCGTCATCGAGAAGTTCACAAAGCTCATTCAGGCCAATGGCGGTACGATTGAAAAAGAGGACCGCTGGGGCAAGAAGCGCCTAGCCTATGAGATCAAGGACAATACCGAAGGATATTATGTTCTGCTGTACGTTAATGCAGAGCCCGCCTGTGTCGCTGAATGCGATCGCGTGATGAAGATCACTGACGAGCTGCTTA # Questionable array : NO Score: 8.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCACACGGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.30,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //