Array 1 39-533 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAMD01000280.1 Saccharicrinis fermentans DSM 9555 = JCM 21142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 39 30 100.0 37 .............................. GCGCTATATCAATGTCTATTTCGAATAATTTTACAGT 106 30 100.0 35 .............................. AATTATGTTATAGCTGGAAGGCGACACCCCCCGTC 171 30 100.0 37 .............................. TTGCGATTGATTACGAACATGGACTACTTCTTTAACT 238 30 100.0 35 .............................. CAAACAGCCCGTTACTCAAGGTGGGATGGTTTTAA 303 30 100.0 38 .............................. ATTTATTGATTTAGATCTTAGATTTCAGGAGATCGAAT 371 30 100.0 37 .............................. GATTTAACAGCAAATATTACAGCATCGGCTACTACAT 438 30 100.0 36 .............................. AGAGTACGATGCTCTAGTGCTAGAACAAAAAGCTTT 504 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 100.0 37 CCCTTAATCGTACCATACTGGAATTGAAAC # Left flank : CTTCTTATATTGTTTTTTAATCCGCTTTCCCAATTAGCC # Right flank : TTGCCAGCAGGATGTATTTTTATTAAGGATAGATACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTAATCGTACCATACTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 43-336 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAMD01000163.1 Saccharicrinis fermentans DSM 9555 = JCM 21142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 43 29 100.0 37 ............................. AAAACAACTACCAAATTGGCTTTAGAGAGGACTTCAC 109 29 100.0 38 ............................. TAAAGATAGGAACAGAAAGAAGCTCTCTCGCTAATAAA 176 29 100.0 36 ............................. GGGCTTCAGATAGCTTTTTTTCGCCGGCTTCTTTTT 241 29 100.0 38 ............................. TTGTAATGTCTCTTGTATTAAATCTGCGCTTATGTCCC 308 29 93.1 0 ...............G............T | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 98.6 38 CCTTAATCGTACCATACTGGAATTGAAAC # Left flank : AGACCGCATATTTACAATGTAGATGCGAACCTTTTCGCTAACC # Right flank : TTTATCGATGTTATATGGAATATAGTGGGTAATCAAATTTTAATTTTCCGCATGTAAAATAGATCATGTTGATAAAATTGTTAATATTCCGATATCTTCTGGCTCTTTTTTTTGCCAGTTGTATCTTGGAATTAATACCTTCTAAAATTCCATTGTTTATTTAGCTTTCGATATAATTAAAGATACCACTCCAATGTGCTTTTATGGTGTTGACGACCTTTACAAAAGGGGCGATTTTACTTTCTGATGCTATGTCGCACCAATAAGCTAAATATCCTTCTGCTTCTTCTGTGTTTTCAATATCCCAAAAGTCTTTAAACAAGTGCATAAGCCTATAGCCGTCACCTAGCCTTGGATACATCTCTAACAATAAGTCGCGCTCGTTCTGCAGCTTAGGAACCAACTTGTTTTTGAGGAATGTATACCTATGTCCTTTTAACATGTCGTTACCTTTGCGTTCCACTTTACAACTCATCCATAGCATTATTAACCTCCTAAAT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTAATCGTACCATACTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 698-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAMD01000262.1 Saccharicrinis fermentans DSM 9555 = JCM 21142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 697 30 100.0 37 .............................. TATCTATTATCTTTAGTTAGAGAAGTTAATTTGTCAA 630 30 100.0 36 .............................. CGCTCATGAGCGTGCCGTCGGTGCGCTCATGAGCGA 564 30 100.0 37 .............................. AGCTTTAGTTTTCCCTCGGCCTGCCCCTTCTCGATCA 497 30 100.0 37 .............................. AATATTGTGTGAACATTTGATCTCTTTCCTCATCGTT 430 30 100.0 37 .............................. ATTGTTTTTTCGTTCACATATTCGCCAACCCTTATAA 363 30 100.0 38 .............................. TTTAGTCTCAAGTTCTTTACGTTCTGCATCTGATTTAC 295 30 100.0 37 .............................. AACCAATATGATGACTATTGGACATTAACAATTTAAT 228 30 100.0 36 .............................. AAGGCCAGCTTGTAGGCTTCCCTGACGAGGTTATTA 162 30 100.0 37 .............................. GGAACAACGGCTTCACACATAATTGGTACAAGTTGTC 95 30 100.0 35 .............................. ACAGGAATGTTGTCTTTAATAGTAAACACAACACG 30 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 100.0 37 CCCTTAATCGTACCATACTGGAATTGAAAC # Left flank : CGCTAAGAAATCTCGATTAACACCAGACAG # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTAATCGTACCATACTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 89063-89423 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAMD01000014.1 Saccharicrinis fermentans DSM 9555 = JCM 21142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 89063 30 100.0 38 .............................. TCTTCCAGAGCACCAGTGTAACGGTTGCCCATCATCCC 89131 30 100.0 35 .............................. AAGGGAAGTAGCGGAAGTTATAAGCGTAGAAGAAT 89196 30 100.0 37 .............................. AATAAAAAGCTTAGTTTTTTCTTCTAATTCGTAAGTC 89263 30 100.0 36 .............................. TAGCTTGTTAAGGCTATAGCTATATCCGAAACCTCG 89329 30 100.0 35 .............................. GATATCATCGGCACTGTTGTAGCAAGGAATTTCGC 89394 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 100.0 36 CCCTTAATCGTACCATACTGGAATTGAAAC # Left flank : TTTATTGGTGATGTATGTGATATTAATGTACGATATGGGTGAAAAACGAGTGGGGAAAATGTTAAAATTGTGCCGGCAATATTTAAATTGGATTCAAAACTCGGTTTTTGAAGGTGAAATAACAGAGGTGAAATTAAAAGAGCTCATTTCAAAAGCTGAGATGATCATGAATGAAGAAGAGCAGGATAGTCTAATTTTATTTAAAAGCCGAGAGCAAAAATGGCTTGAAAAAGAGGTGGTTGGATATGAAAAAAATGACCTCGATCAATTTTTATAGTTGTCGATGTGTATTTTGGGGCCTCCAGTGACTATTTTTTTGGGGGGTTCATTCTGATCATTGCGTTCTTTGACATATTGAAATAACTAATGTTTTGACAATGTTGTCGAAACCCAGTATATTTTATACTTTTGCACATCGACAACTTAAATAGCTCGTTTTAGTGCTATTTGTGAATCTTATTGTATTGAATATCAGATATTTTTTTTGAGTCGTCGGTCGA # Right flank : TTTGCATCCGCGCCTCTGATAAAACCTTGATCAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTAATCGTACCATACTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 730-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAMD01000257.1 Saccharicrinis fermentans DSM 9555 = JCM 21142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 729 30 100.0 36 .............................. GATGGTGTTGGAATATAGCTAGTATCTTTACCATCT 663 30 100.0 36 .............................. ATGAACTACATTATCGATAGTCTTAAATTGCTCTGA 597 30 100.0 36 .............................. TTGGGCTATTGATTCGCTTTTATTCGTTCCAGTCAT 531 30 100.0 37 .............................. TTCGTGGTATCCCCGCTATACTTATCGACTACGAACA 464 30 100.0 39 .............................. ACGTTCATGTCCGATCTCCATGCTTTACTTAAGTTGAAA 395 30 100.0 34 .............................. TCGACTATTACGGCCTGTCCAGCTTCGACCTGTT 331 30 100.0 38 .............................. TCAATAGCTAAATAATACAACATCCCAGAATCATAACA 263 30 100.0 35 .............................. TACGAGGTGGCATTGATGAAGTATGTAAATAGTTT 198 30 100.0 37 .............................. TCAGGAAGAACAAGGTAATAAGAGAGATGTAAGTGTG 131 30 100.0 35 .............................. TAGTGAGTTATCTAAGGAAGAAAAATTCATGCATG 66 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 100.0 36 CCCTTAATCGTACCATACTGGAATTGAAAC # Left flank : TTGAGTGTAGGTTTATGAGAACAGTAATGGGGGCA # Right flank : CCTATAAACGTATAAACACAGCTACCTTGCCTGTAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTAATCGTACCATACTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 1055-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAMD01000222.1 Saccharicrinis fermentans DSM 9555 = JCM 21142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1054 30 100.0 35 .............................. TTATTCCGACTTCGTAAAACAGACTTTTCCAAAAT 989 30 100.0 36 .............................. GAACAATCTAAATCAGAAGTTGAAAGAGAGAAGGCA 923 30 100.0 37 .............................. TCGTGTAAATGTTACAACGCATTTCTTTTTTGTACCA 856 30 100.0 38 .............................. GAAGTAAAATAATCTTTCTGCCAAGCACGATTACGCAT 788 30 100.0 38 .............................. GATTAAACTCTATGTTTAACGTAATACAATTTCCGTCT 720 30 100.0 38 .............................. TGAAAAGGAGGAGCTGTTTAAACAGCTCAAAGAAGAGG 652 30 100.0 35 .............................. AAATTTGAAAATGTTGTTTCGTTGTCCATGATTAT 587 30 100.0 36 .............................. GAGGATTTTGCAACCTTGAAAGATGGTGTATATGAG 521 30 100.0 38 .............................. GAATTATAATTTTGGGAAATGCCTTAATACTAAAATGT 453 30 100.0 38 .............................. AGATTAGAAAATGCAGGATTAAACCCAGCGTTAGCCAT 385 30 100.0 36 .............................. CACCCAGACGCTGTTTTTATGGTTTCGAACGAGATT 319 30 100.0 36 .............................. ATCTTCCTGTTGTAATTAGTAAGCTAGAGTTAAGTA 253 30 100.0 38 .............................. AGGCATAGGTTTTCCGTCCCATCCTTTCTTAGCTGTAA 185 30 100.0 35 .............................. TTGTTGACGGAAAAATAAGCTTAGTTGAGGGGGCG 120 30 100.0 37 .............................. ATATGTCGTGGGGGAAAATGTTTCTGGAATTATTAGT 53 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 100.0 37 CCCTTAATCGTACCATACTGGAATTGAAAC # Left flank : CGTACCATACTGGAATTGAAACTTATTCCGACTTCGTAAAACAGACTTTTCCAAAA # Right flank : CATTGAAACAAATGTAGAGTAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTAATCGTACCATACTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA //