Array 1 183867-185907 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVL010000004.1 Erwinia amylovora strain Ea3a-H1-II Ea3a-H1-II_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183867 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 183928 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 183989 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 184050 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 184111 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 184172 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 184233 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 184294 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 184355 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 184416 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 184477 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 184538 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 184599 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 184660 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 184721 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 184782 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 184843 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 184904 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 184965 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 185026 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 185087 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 185148 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 185209 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 185270 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 185331 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 185392 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 185453 29 96.6 32 .............T............... ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 185514 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 185575 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 185636 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 185697 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 185758 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 185819 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 185880 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGTTACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 196815-198920 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVL010000004.1 Erwinia amylovora strain Ea3a-H1-II Ea3a-H1-II_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 196815 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 196876 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 196937 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 196998 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 197059 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 197120 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 197181 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 197243 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 197304 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 197365 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 197426 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 197487 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 197548 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 197609 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 197670 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 197731 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 197792 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 197853 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 197914 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 197976 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 198037 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 198098 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 198159 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 198220 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 198281 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 198343 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 198404 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 198465 29 100.0 31 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGA 198526 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 198587 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 198648 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 198709 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 198770 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 198831 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 198892 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 208384-208712 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVL010000004.1 Erwinia amylovora strain Ea3a-H1-II Ea3a-H1-II_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 208384 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 208444 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 208504 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 208564 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 208624 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 208685 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //