Array 1 47130-47292 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV825619.1 Corynebacterium sp. HMSC074A01 Scaffold186, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 47130 25 100.0 44 ......................... GCGCGGGCGGGTGGAAAACGCCTGGTCGCGGGTCGCCGAAACTC 47199 25 100.0 44 ......................... CTTGGCGTGGGTGGAAAACGCCTGGTCGCAGGTTGGCGAGATCC 47268 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ============================================ ================== 3 25 100.0 44 CTAAACGGAGCTAGCTCCATTTGGA # Left flank : ACCACGACGCCGATGGTGAACACGATCCAGACCGCAGGCATCAGCCAGCCGGACGGGGCGAGGTTCGTCGACGAGAGCACGGAGAGACACGTGCACACCGACATACCAAGGATGGTTTGGGCGACGAACGTGGCGGTTTTATCGGTGAGTAGTTCGACGCGTTTTGCGTTGGCCTCGGAAAACGGGATCGGGGAGGTGGGCGGTACGTCCGCGGTGCGTCGGACCAGGGAACGCGGTGGCACGCAGAACGCGACCGCGACGGACAGGACCGCGCCAATCCAGATCAAGGCGGTCGCGGCGAGGAACGACTTTGGTTCGTACCGGTCGGGGTTGCCGGCGCCGTCGAAATGCACCGGGATCGGATCCGGGATGGAGTCCCACCGCAGCAGTACGTACGCCAACGTGGCGAGGTAGACGAAGATCGTTGTGGCGTAGTACTGGCGGGACTGCATGGTCTGAGGGTAGCAGGGGCGGATTGGCGTGGTTGCTGACTGTGGTTG # Right flank : ATCCCATCAGGACCCCGGCGGGCCAGATGCGGGAAACCAACCAACAACCACCACTAGACGAAACAACCAATATGTAATAGAAAGAACAGTATGGATTCGAAACGGAAGCAGGAGCTGGCGAACAAGCTCATGGATAGTAATCGGCAAGAAGACAGGCTCGCACACCGGAAACGACCCGCGGCGTACCGCAAGGTCTCCACGCGGTTTTTCATCAGCGTGACGGAATGGAAGCAGCTGCGGTATCACGAAAAACGGTGGCTGGCGGCTTACGCGGTCGGTTGTACGGTGCCGCGGGCGGTGTTGTCGGGCCGGTCGGCGGCGCGGATCCTCGGGATTTGGGTGATCGCGACAACACCGGAGCCGGTGGAGCTGGTCGCGCAGCGGGGTAAGGCTCCGTCACGGAAGCAGTGGCCGCCGGGCGTGGTCTACCGCGACAGATCACCGGGCCACACGCCACCGCAAACCTTCGACCGGCTACGCACAACCGATGCGCTGACCAC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAAACGGAGCTAGCTCCATTTGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.80,-4.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 72640-72408 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV825619.1 Corynebacterium sp. HMSC074A01 Scaffold186, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 72639 26 100.0 43 .......................... ACCCCGGCCACAAATCCCCAGGTCGCACACAACCGAAAACTCC 72570 26 96.2 42 ...T...................... CCCCGGTGCCAAAACCCCAGGTCGTGCAAAACCGACAACCCT 72502 26 100.0 43 .......................... GCGCCGCCACCAAAACCCCAGGTCGCGCAAAGCCGGAAACCCC 72433 26 96.2 0 ....................G..... | ========== ====== ====== ====== ========================== =========================================== ================== 4 26 98.1 43 AAACGGAGCTAGCTCCATTTAGACCA # Left flank : ACGCCCCGAAGACCTACGACGAATACGTCGAGTACATGGACGCGATGATCGACAAGCTGGGCCCCAGCGAGACAATCGACCGCTCCCGCATCATCAACGGCCTGACCCTGGACACCCCGGACCCGTCCGTACCGAAGTGGGCGTGGAAGCCGATCGCTCCCTACGTGTCCAAGCTGCTCCTGTGGGTTGCCATCGGCATGATCCCGGACAAGCTGCGCGACAACCTGGGCTGGGAGTGGACCAAGTCCGACGCCCGTCGCCTCAAGGCACTGTCCACCGGCACGCGCCTGGTCTTCTCCGTCCTGCCTCGCAAGGCTCGCATGGTGCCGATCGCCTCGCGCGCCTTCGAGAAGGCAGAAGCCGAGGGCGGCTTCCACTACTAGGTTTGTCGTACGAGGTTTGTCGATACACCATTAAGCGCCAGGTTCCGCTATCTCGCGGGCCTGGCGCTTTTGCATGGGTGCGGCGGGGCGCTGCGCGGTTCCATTGCGCGGTGCCCT # Right flank : GCGTTTAGACAACCAACGTTTAGACCAGGGTCAGCCGCACGAGACACACCACAGCAAAAAGACCCGGCCAGCCCCTCCCACGATGTCCAACACGTGGCAGCAGCTGCCGGGCCCTACAAACCCGGACAGCCCGCCCTGTTTAGGGAACCGTGAGGCGCACCGACGGCGCGTCGAAGTTCGTCCCGTAGAGCGCGACCATCTCCATGGTCACGCCGGTCAGGGAGATTTCCTTCATCAGCATGTCGGGGATCTCCATGTTCGGCACTGGGTGGCGATCCGGTACGCCGAGTTGGTCGAGCACCGAGTTGATGTCGGCGTCCAGGTTGACGGTCACCGGGATGGTGCGCACGTCGCGCACTGCCGGGGTTGCGGTCAGGCCGGTGGCGACGATCTTGACCGGGCCGTCGATCACCTTGGTGTCCACGTTGCCAGTGCTCAGCTTCGCCCCGCCGCCGAAGCCCGGGATCTGCAGGCCGAGGTTGCGGCCGACGAGCCGATCA # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAACGGAGCTAGCTCCATTTAGACCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 1094-1244 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV825627.1 Corynebacterium sp. HMSC074A01 Scaffold324, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1094 29 100.0 32 ............................. GGGCCGGACGTGAAGTGGTCTGACCTGCTGCG 1155 29 100.0 32 ............................. AATAGGAACCAAGCGGAACGCAGCGGAACCGA 1216 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : | # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 204118-203881 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV825630.1 Corynebacterium sp. HMSC074A01 Scaffold404, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 204117 30 100.0 39 .............................. TCCGGTGACGTGCGACCTGGTCTTTTGTGTCCGGGGTTG 204048 30 100.0 39 .............................. ATCGATGACACGCGACCTGGGCTTTTACAACCGGCCCGA 203979 30 93.3 39 ...C................A......... TCCGGCGACGTGCGACCTGGGCTTTTCCGACCGGCGCGA 203910 30 80.0 0 .C..................A.....ACCC | ========== ====== ====== ====== ============================== ======================================= ================== 4 30 93.3 39 GTCTAAATGGAGCTAGCTCCTTTTGGGAAG # Left flank : CAACGGGGCAGAGCTTTGCCATCCGCGGCGCGTATTGGCGACCGGGGGATTCCGGCGGCCCGGTGTGGATCCCGGGGCGCGGTCTTGTAGGCGTGGCCTCGATCGGCCCTGCCACGCCGGGCAAAGTGGGCACCGCGACGGTCGGTAGGGTCCGCGTCGAGGGCAAGCCGATGGGATGGGGCGCCGCCCCACGCGACGGCCGCCTGATTGGCAATGAGGAGGGCTCCCGCGAGTTCCTCGCTGCGGCGGGCCTGGATTCTGCGGGTGTCTATGATGAGCTGATTGATAGAAGCTCCAAGTCTTCGAAGAGTTCCTCCTCGGAAAAGGAGTCCTCGAGCTCGGAGATGACCCCGGGCGAGATCCTCTCGATTGTCATCCCGATCCTGGTGGTGCTCGTGCCGCTTCTCGCGCAGCTGGCCCAGCTGGCGCAGCAGTTTATGCGCTAAAAAGGTCTTCCGCGGCCGCGGACGGCTGGCAGCGAAGCACTCCCGACAGCGTAG # Right flank : GACCGCTCACCCCAAATCCGCAATATGGTCACAGGTGTGCAGACCATCAGCAGGCGGCCAGTCAGCGAAGCACACATCGATGCGAGGGCGGTCTCCGTTCGGTTTTCGCTCAGCGAGATCTCGAATCTCGACAGGCAGCAGCCGCCCGCGGTGGTCAGGCCACACCACCTGCACCAAACCCGCAGGTGACAGCGTCAATAGTGATTTTTACTCCCAAAAAGTGAACTCGCGCAGCAGTTTATGCACTAAAAAGCCCCGCACCGGGTATGCGGGGCTGAAAGCGTAAGCGGCGCGTTAGGCCGGGGCCGGCAGGAACATCAGGATGAAGGTGAGCAGCCACAGCAGGTTGAAGATGCCAGCGCCTGCGGCGGCCTTCGCCTTGGCCTTTTCGAAGTTCGACGCGGCGTCGGATGCGTCGCCGTCGGCGGGGGAGAGTGCGCCGAGCGAGCCCATGATGGCGCGCTGCTGGGGGATGACCATGAAGAAGAGCAGGCCCCACG # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAATGGAGCTAGCTCCTTTTGGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 48191-47369 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV825631.1 Corynebacterium sp. HMSC074A01 Scaffold467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48190 29 100.0 32 ............................. TCGACGGTAAGCCCCGCGTCAAGCGGCAAGTG 48129 29 100.0 32 ............................. TCGGTAATGCTCTTCCTTTGCCGTCCCATCTC 48068 29 96.6 32 ............................G TTGAGTAGGCCGATCTGCTCGGCAATTGTCTT 48007 29 100.0 32 ............................. CAGAGCAAGCCAGCGCAGGCTGCAATCGAAGA 47946 29 93.1 32 ...........A................G GGGCCGTCACCCTCGTCGATCACCCCGTACTC 47885 29 96.6 32 ...........A................. CGCGCACCGCGTCTAATCAGATTGAGCCCCAT 47824 29 86.2 32 ...........A.GC.............G TCGTCGCCAAGGGCGGGCCCGAATACCAGCAG 47763 29 89.7 32 ...........A.GA.............. GAAGCGTCGAACCCGCGGTTCACCGTCACCCT 47702 29 89.7 32 ...........A.GA.............. TTGATGCCCTACTTGAGCGGATCGCGAGCAAT 47641 29 89.7 32 ...T.........GA.............. GCGTCAGGTCCGTCAATCTTGTCATGCACGTC 47580 29 89.7 32 .............GA.............G CAGAGGTCGAATTACGCCGCAACGAGACCAGC 47519 29 79.3 31 .....T......TGA..A..........T TGCGCGCAAGCTCGAGAACTCGCTCTTCCAC T [47493] 47458 29 89.7 32 ............TT...........A... CGTTTGATGGCAGCAATGCGCGCCTTGGGATT 47397 29 79.3 0 .............TA..A..AG......T | ========== ====== ====== ====== ============================= ================================ ================== 14 29 91.4 32 GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : CCGCGCAGGCGGGGATGAGCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCTCCCCGCGCAGGCGGGGATGAGCCCCCACTGCCACCGGCGGCACCGGGCAGGTACTCGTGCTCCCCGCGCAGGCGGGGATGAGCCCTGACCGCGGTACACGCGAGGCACCATAGAACGGTGCTCCCCGCGCAGGCGGGGATGAGCCCTCGGTCTTCGACAACGACGGTACTAACCCGGAGTGCTCCCCGCGCAGGCGGGGATGAGCCGGAGGCGGTCGGTGTGCCGTGGAAGCCTGATTAGTGCTCCCCGCGCAGGCGGGGATGAGCCCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CACCTCGAGGTCTCGGAGCGCGTGCTCGAGCTACGCCCCCTCCCCATCCATGCCACAATGGCGTTATGCACATCTACTTCTCCTCCGTCTATGGGTCTACGCGGCAGTACGCTGAGGAGCTCGCGCGTCGTCTAGGCACGACAGCGCAGGAGATTCCTGACCCCGCCGAAGTGTCCGCGGCCGCCGAAGAAGGCCCCATTATCGTCCTCGCACCGGCGCACGGACCGATGAACGCTGCGGCCAAGTTCGCAAAAGCGCTACCTGAGCAGACGACCGAGGCCCGCCCCACCTGCGTCGTCACGGTGGGGATGACGCTGGACCATGTGGTACAAGAAGCGGATCCGACGGCAGAGCTGCTCGGCGACCGGGCCAGCAAAATCCAACGCTTCTACTTGCCCGGCCGCCTGAATTACTCCGAACTCACCGCCGCCCACGCGGGCGTGATGCGTGGGATCATCGGCGCGCTCAAGTTGAAGCCTCGGAAATCGGAGAATGAGCGC # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 48567-48294 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV825631.1 Corynebacterium sp. HMSC074A01 Scaffold467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48566 29 100.0 32 ............................. CCACTGCCACCGGCGGCACCGGGCAGGTACTC 48505 29 100.0 32 ............................. TGACCGCGGTACACGCGAGGCACCATAGAACG 48444 29 100.0 32 ............................. TCGGTCTTCGACAACGACGGTACTAACCCGGA 48383 29 96.6 32 ............................G GAGGCGGTCGGTGTGCCGTGGAAGCCTGATTA 48322 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : GCAGTGCTCCCCGCGCAGGCGGGGATGAGCCGGCATCGCGATCAAGAAGCGGCAAGCGATCCTCGTGCTCCCCGCGCAGGCGGGGATGAGCCGATGCCGAGGTCGTTGCGCCAGATGCGCATTTCGTGCTCCCCGCGCAGGCGGGGATGAGCCGTCTGTGGCGGTGCATTACGGCCCGGCTGTGGTGTGCTCCCCGCGCAGGCGGGGATGAGCCCATCGACCGCGACGACATTTCCACCACCGACGCGTGCTCCCCGCGCAGGCGGGGATGAGCCGCGCACTATCCGTGTTGGCGCAACTGTGAAGCAGTGCTCCCCGCGCAGGCGGGGATGAGCCCCTTGGCAAGCCTGAGGTGATTTTCCCGGCTGAGTGCTCCCCGCGCAGGCGGGGATGAGCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA # Right flank : TCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCTCCCCGCGCAGGCGGGGATGAGCCCTCGACGGTAAGCCCCGCGTCAAGCGGCAAGTGGTGCTCCCCGCGCAGGCGGGGATGAGCCCTCGGTAATGCTCTTCCTTTGCCGTCCCATCTCGTGCTCCCCGCGCAGGCGGGGATGAGCCGTTGAGTAGGCCGATCTGCTCGGCAATTGTCTTGTGCTCCCCGCGCAGGCGGGGATGAGCCCCAGAGCAAGCCAGCGCAGGCTGCAATCGAAGAGTGCTCCCCGCACAGGCGGGGATGAGCCGGGGCCGTCACCCTCGTCGATCACCCCGTACTCGTGCTCCCCGCACAGGCGGGGATGAGCCCCGCGCACCGCGTCTAATCAGATTGAGCCCCATGTGCTCCCCGCACGCGCGGGGATGAGCCGTC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 49125-48669 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV825631.1 Corynebacterium sp. HMSC074A01 Scaffold467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49124 29 96.6 32 ............................C GAACTGTGGTGTGGCGCGTGCCTGCACAAGCA 49063 29 100.0 32 ............................. GCATCGCGATCAAGAAGCGGCAAGCGATCCTC 49002 29 100.0 32 ............................. ATGCCGAGGTCGTTGCGCCAGATGCGCATTTC 48941 29 100.0 32 ............................. TCTGTGGCGGTGCATTACGGCCCGGCTGTGGT 48880 29 96.6 32 ............................C ATCGACCGCGACGACATTTCCACCACCGACGC 48819 29 100.0 32 ............................. CGCACTATCCGTGTTGGCGCAACTGTGAAGCA 48758 29 96.6 32 ............................C CTTGGCAAGCCTGAGGTGATTTTCCCGGCTGA 48697 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGCTCCCCGCGCAGGCGGGGATGAGCCG # Left flank : ACACTGTGCTCCCCGCGCAGGCGGGGATGAGCCGGCCGGGTGCCCAGCCGAAAGGATTGTGCTGGTGTGCTCCCCGCGCAGGCGGGGATGAGCCGAAGACAGAAACAGGAAAGGAAGACTAGCGATGGTGCTCCCCGCGCAGGCGGGGATGAGCCGCGGTGCCGCAACGTGTGCGCAGTCAAGTCACCGTGCTCCCCGCGCAGGCGGGGATGAGCCCGTGATGTAGCCCTGCACCTGTTCGACTTCGGGGTGCTCCCCGCGCAGGCGGGGATGAGCCGGTGAAGCGTTGCGACCAGTCGAGCACGTTTGCGTGCTCCCCGCGCAGGCGGGGATGAGCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGCAGGCGGGGATGAGCCCCTCCAAACCCTCTGCAAACCCTGCCACCAACA # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCTCCCCGCGCAGGCGGGGATGAGCCCCCACTGCCACCGGCGGCACCGGGCAGGTACTCGTGCTCCCCGCGCAGGCGGGGATGAGCCCTGACCGCGGTACACGCGAGGCACCATAGAACGGTGCTCCCCGCGCAGGCGGGGATGAGCCCTCGGTCTTCGACAACGACGGTACTAACCCGGAGTGCTCCCCGCGCAGGCGGGGATGAGCCGGAGGCGGTCGGTGTGCCGTGGAAGCCTGATTAGTGCTCCCCGCGCAGGCGGGGATGAGCCCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCTCCCCGCGCAGGCGGGGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 49803-49286 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV825631.1 Corynebacterium sp. HMSC074A01 Scaffold467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49802 29 100.0 32 ............................. GTCGGATGAGACAGGAGCACGAAGTACAGGTG 49741 29 100.0 32 ............................. TGCAACGCAATCGCACGACCAGCGCGCACCGC 49680 29 100.0 32 ............................. GCCCTGCTCGAGTCCGAGGGCCTGCCGACACT 49619 29 96.6 32 ............................G GCCGGGTGCCCAGCCGAAAGGATTGTGCTGGT 49558 29 96.6 32 ............................G AAGACAGAAACAGGAAAGGAAGACTAGCGATG 49497 29 96.6 32 ............................G CGGTGCCGCAACGTGTGCGCAGTCAAGTCACC 49436 29 100.0 32 ............................. GTGATGTAGCCCTGCACCTGTTCGACTTCGGG 49375 29 96.6 32 ............................G GTGAAGCGTTGCGACCAGTCGAGCACGTTTGC 49314 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGGTGCTCCCCGCGCAGGCGGGGATGAGCCTGCTGAGGTGATGGCGGAGTTCCGCCAGGACTTGTGCTCCCCGCGCAGGCGGGGATGAGCCCAACCGGATCGGCGTAACTCATTCGACTACCTCGTGCTCCCCGCGCAGGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGCAGGCGGGGATGAGCCGGATGGGCTTACCCCGTCGATGGGGCCGCGCAT # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGCAGGCGGGGATGAGCCCCTCCAAACCCTCTGCAAACCCTGCCACCAACAGTGCTCCCCGCGCAGGCGGGGATGAGCCCGAACTGTGGTGTGGCGCGTGCCTGCACAAGCAGTGCTCCCCGCGCAGGCGGGGATGAGCCGGCATCGCGATCAAGAAGCGGCAAGCGATCCTCGTGCTCCCCGCGCAGGCGGGGATGAGCCGATGCCGAGGTCGTTGCGCCAGATGCGCATTTCGTGCTCCCCGCGCAGGCGGGGATGAGCCGTCTGTGGCGGTGCATTACGGCCCGGCTGTGGTGTGCTCCCCGCGCAGGCGGGGATGAGCCCATCGACCGCGACGACATTTCCACCACCGACGCGTGCTCCCCGCGCAGGCGGGGATGAGCCGCGCAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 51762-51550 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV825631.1 Corynebacterium sp. HMSC074A01 Scaffold467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51761 29 100.0 32 ............................. CCTCACCAGGCGGTGGGGGTTCACCTAATTTG 51700 29 100.0 32 ............................. CGAACGCGCCCGGGTTAGCCATAAGCGACGCG 51639 29 100.0 32 ............................. GTTCCCGTCTGTCGGTCGATGGCAGCATTGTC 51578 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGTGCTCCCCGCGCAGGCGGGGATGAGCCCCCGCGCTTGGCACTGCAAAAAGTCTCAATCGAGTGCTCCCCGCGCAGGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA # Right flank : AACGTTGTAGTCCGCGAAAGTCTCCCGCACGAGTGCTCCCCGCGCAGGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGTGCTCCCCGCGCAGGCGGGGATGAGCCGTTCGGGCTGGGCGCACGCAGGCACTCATGGAGGTGCTCCCCGCGCAGGCGGGGATGAGCCCGATAACTTCACGGCCCTGTTCCAAGCGCAGGCGTGCTCCCCGCGCAGGCGGGGATGAGCCCGCGGCCGAGAAGCCCTTGACGGCCTTGATCGCGTGCTCCCCGCGCAGGCGGGGATGAGCCGGTGACGCGCATAACCGGTGACTTAAAACTGGTGTGCTCCCCGCGCAGGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 53106-52955 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV825631.1 Corynebacterium sp. HMSC074A01 Scaffold467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53105 29 100.0 32 ............................. ACCCCATTTAAAACACGACGCCACCGTGACGA 53044 29 100.0 32 ............................. AACCTCGACCAAGACGACGTCCAATTCATCAC 52983 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 54256-54105 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV825631.1 Corynebacterium sp. HMSC074A01 Scaffold467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54255 29 96.6 32 N............................ AAGAAGTCCGACAAGGGGCACGGCCACACCAT 54194 29 100.0 32 ............................. GGCACAAATTCCACGCGGTACACCTGGCCGCG 54133 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 55831-55314 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV825631.1 Corynebacterium sp. HMSC074A01 Scaffold467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55830 29 100.0 32 ............................. ATGGACACCGGCGTGTGGGATCAGGGCACCGA 55769 29 100.0 32 ............................. GTCCGCCGTCTTCTCCGCCGTCGTGATACGAC 55708 29 100.0 32 ............................. ATCTTCTCGGTGTCAGAGTTGCGGGTGGGCTG 55647 29 100.0 32 ............................. CAATCCAGGGGGAGGGGGCGCGGGGTGTTCTA 55586 29 100.0 32 ............................. GGGTGGGTGCCACCCTTGTGGTGGGATGACAT 55525 29 100.0 32 ............................. GCTTGACCCGATTGAGCCGTGCTGGTGGTTCC 55464 29 96.6 32 ............................G CCGCCGAGCTTCCCGGCGGCGAGTTCGCCCGC 55403 29 100.0 32 ............................. ATGGTGTCGCTGAGCGCGTTGAAGTCGGTGTC 55342 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : TGCTCCCCGCGCAGGCGGGGATGAGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGCAGGCGGGGATGAGCCGGATGTACCCCTGGTGGCGCTCACCACCGCCCGGTGCTCCCCGCGCAGGCGGGGATGAGCCGCTGGCGAAGGCCGAAGAGAAGCTGACCCGCACGTGCTCCCCGCGCAGGCGGGGATGAGCCCGCCGGTGCGAAGATCGTCTGGCAAGCTGTCTCGTGCTCCCCGCGCAGGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGCTCCCCGCGCAGGCGGGGATGAGCCGGTCACCTCCCCGCAAGTGGTGACCTTCACCAA # Right flank : GGTCGCTTGCGCTATCACACGGTGCTTATCTCGTGCTCCCCGCGCAGGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 56143-55992 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV825631.1 Corynebacterium sp. HMSC074A01 Scaffold467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56142 29 96.6 32 ............................G CTGGCGAAGGCCGAAGAGAAGCTGACCCGCAC 56081 29 100.0 32 ............................. GCCGGTGCGAAGATCGTCTGGCAAGCTGTCTC 56020 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : NNNNNNNTGCTCCCCGCGCAGGCGGGGATGAGCCCCAACCGGGGCTCACGACTCCTACCCGCCCGAAGTGCTCCCCGCGCAGGCGGGGATGAGCCCGCAGCGTACGGGGCACAAACCACCACCCGCACGTGCTCCCCGCGCAGGCGGGGATGAGCCCCTCGGGTCTGACTTTGAGGTGCGCGCCAAGACGTGCTCCCCGCGCAGGCGGGGATGAGCCGGCGACGGAGGCGACGAACGCCAGGGCTTGCCAGTGCTCCCCGCGCAGGCGGGGATGAGCCCACCGCCGTACCGGCAGACGCGGCGGAAAGGGCGTGCTCCCCGCGCAGGCGGGGATGAGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGCAGGCGGGGATGAGCCGGATGTACCCCTGGTGGCGCTCACCACCGCCCG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGCTCCCCGCGCAGGCGGGGATGAGCCGGTCACCTCCCCGCAAGTGGTGACCTTCACCAAGTGCTCCCCGCGCAGGCGGGGATGAGCCCATGGACACCGGCGTGTGGGATCAGGGCACCGAGTGCTCCCCGCGCAGGCGGGGATGAGCCCGTCCGCCGTCTTCTCCGCCGTCGTGATACGACGTGCTCCCCGCGCAGGCGGGGATGAGCCCATCTTCTCGGTGTCAGAGTTGCGGGTGGGCTGGTGCTCCCCGCGCAGGCGGGGATGAGCCCCAATCCAGGGGGAGGGGGCGCGGGGTGTTCTAGTGCTCCCCGCGCAGGCGGGGATGAGCCCGGGTGGGTGCCACCCTTGTGGTGGGATGACATGTGCTCCCCGCGCAGGCGGGGATGAGCCCGCTTG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-13.70,-15.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 56576-56303 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV825631.1 Corynebacterium sp. HMSC074A01 Scaffold467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56575 29 100.0 32 ............................. GCAGCGTACGGGGCACAAACCACCACCCGCAC 56514 29 100.0 32 ............................. CTCGGGTCTGACTTTGAGGTGCGCGCCAAGAC 56453 29 96.6 32 ............................G GCGACGGAGGCGACGAACGCCAGGGCTTGCCA 56392 29 100.0 32 ............................. ACCGCCGTACCGGCAGACGCGGCGGAAAGGGC 56331 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGTGCTCCCCGCGCAGGCGGGGATGAGCCCCGATTAGGAGTGTATCAGCGATGGCTGTACAAGTGCTCCCCGCGCAGGCGGGGATGAGCCCGTGGAGATGGGTGGCGGTGCCGGGGGCCAGGGGTGCTCCCCGCGCAGGCGGGGATGAGCCCCAACGGACCCGCGAGGCGATGACGACGAGCCAGTGCTCCCCGCGCAGGCGGGGATGAGCCGTCGCGGCGGATGTCCTCGACTGAGGCGGCCGCGTGCTCCCCGCGCAGGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGCAGGCGGGGATGAGCCCCAACCGGGGCTCACGACTCCTACCCGCCCGAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGCAGGCGGGGATGAGCCGGATGTACCCCTGGTGGCGCTCACCACCGCCCGGTGCTCCCCGCGCAGGCGGGGATGAGCCGCTGGCGAAGGCCGAAGAGAAGCTGACCCGCACGTGCTCCCCGCGCAGGCGGGGATGAGCCCGCCGGTGCGAAGATCGTCTGGCAAGCTGTCTCGTGCTCCCCGCGCAGGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGCTCCCCGCGCAGGCGGGGATGAGCCGGTCACCTCCCCGCAAGTGGTGACCTTCACCAAGTGCTCCCCGCGCAGGCGGGGATGAGCC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 11 57008-56735 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV825631.1 Corynebacterium sp. HMSC074A01 Scaffold467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57007 29 100.0 32 ............................. CGATTAGGAGTGTATCAGCGATGGCTGTACAA 56946 29 100.0 32 ............................. GTGGAGATGGGTGGCGGTGCCGGGGGCCAGGG 56885 29 100.0 32 ............................. CAACGGACCCGCGAGGCGATGACGACGAGCCA 56824 29 96.6 32 ............................G TCGCGGCGGATGTCCTCGACTGAGGCGGCCGC 56763 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCCGCGCAGGCGGGGATGAGCCCATGCCGTCGAGAATCTGCTTCTGCGCGCACTGGTGCTCCCCGCGCAGGCGGGGATGAGCCGTCACCCATAGCCAGCATTTCGACGACCTCCACGTGCTCCCCGCGCAGGCGGGGATGAGCCGTTGCGGGTACGAGCGACTCCGCTCAAATTCGAGTGCTCCCCGCGCAGGCGGGGATGAGCCCGCCGAATTCGCCGACGTGTACGGCTCCCACTCGTGCTCCCCGCGCAGGCGGGGATGAGCCGGAAACCTGCAGCACCATTTACCGGCGTAGCTGGTGCTCCCCGCGCAGGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGCAGGCGGGGATGAGCCCCAACCGGGGCTCACGACTCCTACCCGCCCGAAGTGCTCCCCGCGCAGGCGGGGATGAGCCCGCAGCGTACGGGGCACAAACCACCACCCGCACGTGCTCCCCGCGCAGGCGGGGATGAGCCCCTCGGGTCTGACTTTGAGGTGCGCGCCAAGACGTGCTCCCCGCGCAGGCGGGGATGAGCCGGCGACGGAGGCGACGAACGCCAGGGCTTGCCAGTGCTCCCCGCGCAGGCGGGGATGAGCCCACCGCCGTACCGGCAGACGCGGCGGAAAGGGCGTGCTCCCCGCGCAGGCGGGGATGAGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 12 57383-57110 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV825631.1 Corynebacterium sp. HMSC074A01 Scaffold467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57382 29 100.0 32 ............................. TCACCCATAGCCAGCATTTCGACGACCTCCAC 57321 29 100.0 32 ............................. TTGCGGGTACGAGCGACTCCGCTCAAATTCGA 57260 29 96.6 32 ............................C GCCGAATTCGCCGACGTGTACGGCTCCCACTC 57199 29 100.0 32 ............................. GAAACCTGCAGCACCATTTACCGGCGTAGCTG 57138 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGCTCCCCGCGCAGGCGGGGATGAGCCG # Left flank : AGTATGAGTGCTCCCCGCGCAGGCGGGGATGAGCCCGAATCCATGAAATCGTCATAAGCAAACGTGCCGTGCTCCCCGCGCAGGCGGGGATGAGCCCTGGGTGGTGTGGGCTTGGTAGTCATGCGGAACGTGCTCCCCGCGCAGGCGGGGATGAGCCCTGCTGTGATGAGTGCTTGCTGTGTGGTGTCCTGTGCTCCCCGCGCAGGCGGGGATGAGCCGGACGCGCGGGCCGAAGCCGAGCGTGCCGAGGCGTGCTCCCCGCGCAGGCGGGGATGAGCCGTCCTCGTTACGCCACGCCGAAGACACCTCCTCAGTGCTCCCCGCGCAGGCGGGGATGAGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCCGCGCAGGCGGGGATGAGCCCATGCCGTCGAGAATCTGCTTCTGCGCGCACTG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGTGCTCCCCGCGCAGGCGGGGATGAGCCCCGATTAGGAGTGTATCAGCGATGGCTGTACAAGTGCTCCCCGCGCAGGCGGGGATGAGCCCGTGGAGATGGGTGGCGGTGCCGGGGGCCAGGGGTGCTCCCCGCGCAGGCGGGGATGAGCCCCAACGGACCCGCGAGGCGATGACGACGAGCCAGTGCTCCCCGCGCAGGCGGGGATGAGCCGTCGCGGCGGATGTCCTCGACTGAGGCGGCCGCGTGCTCCCCGCGCAGGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGCAGGCGGGGATGAGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 13 57998-57603 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV825631.1 Corynebacterium sp. HMSC074A01 Scaffold467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57997 29 100.0 32 ............................. AAAATGGTTTTTCATCACTTTCCACCGGATCA 57936 29 96.6 32 ............................G TGGAACTTCCGCGATATGTCGCTTGAGTATGA 57875 29 100.0 32 ............................. GAATCCATGAAATCGTCATAAGCAAACGTGCC 57814 29 100.0 32 ............................. TGGGTGGTGTGGGCTTGGTAGTCATGCGGAAC 57753 29 100.0 32 ............................. TGCTGTGATGAGTGCTTGCTGTGTGGTGTCCT 57692 29 96.6 32 ............................G GACGCGCGGGCCGAAGCCGAGCGTGCCGAGGC 57631 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCTCCCCGCGCAGGCGGGGATGAGCCGTCCCGCCACGCACGCGCCGGGCTGGGTGAACTGTGCTCCCCGCGCAGGCGGGGATGAGCCGCGACGCGCCACCGATACGCAGCTAGCGGACAAGTGCTCCCCGCGCAGGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : TCCTCGTTACGCCACGCCGAAGACACCTCCTCAGTGCTCCCCGCGCAGGCGGGGATGAGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCCGCGCAGGCGGGGATGAGCCCATGCCGTCGAGAATCTGCTTCTGCGCGCACTGGTGCTCCCCGCGCAGGCGGGGATGAGCCGTCACCCATAGCCAGCATTTCGACGACCTCCACGTGCTCCCCGCGCAGGCGGGGATGAGCCGTTGCGGGTACGAGCGACTCCGCTCAAATTCGAGTGCTCCCCGCGCAGGCGGGGATGAGCCCGCCGAATTCGCCGACGTGTACGGCTCCCACTCGTGCTCCCCGCGCAGGCGGGGATGAGCCGGAAACCTGCAGCACCATTTACCGGCGTAGCTGGTGCTCCCCGCGCAGGCGGGGATGAGCCNNNNNNNN # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : GTGCTCCCCGCGCAGGCGGGGATGAGCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 14 60384-60172 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV825631.1 Corynebacterium sp. HMSC074A01 Scaffold467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60383 29 100.0 32 ............................. ACCACGGATGATGCGCCGGTTCGCTGGAAGCT 60322 29 100.0 32 ............................. AAGACACTGCGAGCAATCATCGCGCTTTTCGC 60261 29 100.0 32 ............................. AACCTCCATGCCAGACGCCAGCGCCTTAGCAG 60200 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : AGCGTAGCTCATTCTTCTAACTTTCGCACTATCTCGACCTAACGAGTTGAAATAATTATGAGGTGGGTTTTGGCCATGACGTCTTGAACAGGAGACTTTCGCCGAATAGATTGAAGCTCAACCCTGCGTCTGCAGGGATGAGCCTTCGTTGGGCCGAGATAGAAATCGCTCCCCGCGTCAGCGGGGCTGGGTTGCGACAGAAGTTAATTGTTAACATCGGTATTGGCTCTCAAAACTGCATGTCATGCAGTGTGCTCCCCGCGCAGGCGGGGATGAGCCGTCGTTGGTGGTGCGTGATTCTGCCGGTGGTGGGTGCTCCCCGCGCAGGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGCAGGCGGGGATGAGCCCGCAGACCGAGCACGCGCCACAGCAGCCGTAGA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTGCTCCCCGCGCAGGCGGGGATGAGCCCATTTCCTCTATCCACCAGAAGGTGTCCTTGCCGTGCTCCCCGCGCAGGCGGGGATGAGCCGGCGCAAACTGCTGCGCAGGCTGCATTCAACCTGTGCTCCCCGCGCAGGCGGGGATGAGCCCAGATGCCCGGCGGTGAGCCTTCCATGTCTGGCGTGCTCCCCGCGCAGGCGGGGATGAGCCCCTCCGCGCCTCATGGCCGGAGGAAGACGAGCGGTGCTCCCCGCGCAGGCGGGGATGAGCCCGAGCTCGGCTACGTCGCGTCGCTGGTGAAGGGGTGCTCCCCGCGCAGGCGGGGATGAGCCGAAGCCCGGCGCGCCCTTCTGCAGGACGAGGACGTGCTCCCCGCGCAGGCGGGGATGAGCCCAGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //