Array 1 166599-164817 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKLM01000045.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN008082 CFSAN008082_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 166598 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 166537 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 166476 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 166415 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 166354 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 166292 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 166231 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 166170 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 166109 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 166048 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 165987 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 165926 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 165865 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 165804 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 165743 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 165682 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165621 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 165560 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 165498 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165395 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165334 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165273 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165212 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 165151 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 165090 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 165029 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 164968 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 164907 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 164846 29 96.6 0 A............................ | A [164819] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184224-182731 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKLM01000045.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN008082 CFSAN008082_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 184223 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 184162 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 184101 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 184040 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 183979 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 183918 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183857 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183796 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183735 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 183674 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183613 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 183552 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 183491 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 183430 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 183369 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 183308 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 183246 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 183185 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 183124 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 183063 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 183002 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 182941 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182880 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182819 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182758 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //