Array 1 81545-79935 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOU01000024.1 Sphaerisporangium rufum strain NBRC 109079 sequence024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 81544 30 100.0 34 .............................. ACCATCTACCTCGACACGCGCCCCCTGATCAGCA 81480 30 100.0 34 .............................. CCGCGAGCTTCACCCCGCCGTTCCCCGGATTCCA 81416 30 100.0 35 .............................. TTGTTGACGCTGTCGGACGACGAGCGGCTGCTGCC 81351 30 100.0 34 .............................. CGCGTCAGCGAAGCGCGTGACTGACCGTTTCACG 81287 30 100.0 35 .............................. GCGCCGTCCAGCTCGCCGTTGGGGGTGATGTACTC 81222 30 100.0 36 .............................. GAGTACAGCCCCCCGAACAGGGTGTTGTCGAGGCTG 81156 30 100.0 35 .............................. ACGTCTGGCCGGCGCTGGTCCCGGTGACCGCCACG 81091 30 100.0 39 .............................. CGCGTAGCGCGATCTTCTGTCCGGGGGCATCGAGTCCGG 81022 30 100.0 35 .............................. TGCGATCCTCGCGACCTTGCCGGCGGTGCGTACGA 80957 30 100.0 35 .............................. GCGAGCGACTGCGGCTGGACGGGAGTCGTCTGGGT 80892 30 96.7 35 .....T........................ GCGCGGTGTCCTTCGCGGACGGCGTCGCCCGCGTC 80827 30 100.0 35 .............................. GGTAGATCCTGCCGAGAATCCCGGTTGCCGTAGTC 80762 30 100.0 35 .............................. CCAGACTTCCGCCCGCGCGCCACCTGCGACACGTA 80697 30 100.0 36 .............................. AGAAACCGGCGCCGGCGCTGGCCGTAGGGATCGCCT 80631 30 100.0 34 .............................. GAAAGTATTGGGAGGAGACCTCCGAGCTTCACAA 80567 30 100.0 39 .............................. ACCGGCGGCGCAAGCTCGTCAACGAGCGAGAGCAGCGCG 80498 30 100.0 39 .............................. ACCGTCCACCAGCCGGGGCCGCCGCTCAGGATGCCGGTC 80429 30 100.0 30 .............................. CCGGGACCGCTCTTGCTGAGGGCGGGGGTC 80369 30 96.7 40 ................T............. GCGATGGTGGGGCGGCGGCCGCGGCCACCGGCCAGGGCGT 80299 30 100.0 39 .............................. GCTTCCGTGACATTCTCCTCAGGCCACCACCTTTGTCCC 80230 30 100.0 35 .............................. ACGAACTCGACACGCTGGAACCGGCGTTCACGGCC 80165 30 96.7 36 ................T............. ATCAGGACTGGGTCTCGCCCGAGGACCCCGCTGCCA 80099 30 96.7 36 ...........T.................. CTGCTGGTCCCACCCGGGACGGCCGTGACGGCGATC 80033 30 96.7 39 .............................T GTGATGTCCTTCAGCTTCGCGCCGAGCTTGCCGCGCCGG 79964 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 25 30 99.3 36 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : GGCCGCGCCCGCCGACCGCGTACCTCCCCTTCGCCTTCGCGGCCCGAGGGAACACCGGGGCTCCGTGACCCAGCGGTACCATGCCGTACGGCCCTGCGCCCGCGGCGTGCAACTGCCGGCCGACCGCCGGCGCCTCCCGCGCCAGCAGGTCGTAGATGAGCGACCGCCCCGGTGCCAGGACCTTCGGCCACGGCAGCTCCGTAGCCGTGGTGCTGACCTCGACCCGCACCCGCATTCCGCCTCCCCTTTCCTTCGCCGTCACCCAACACAGACGGACGGAAGTCACCGGAGACGCGCTTCGACGCGTTTCCGCAGGTCTACGTGCATCCACCGGGATACGATCGAAGAGAGTCCGCCGCGAGCAGCCAGCTCGACACGCAGGAAGAGGATCATGAATTTGCAGCAGACCTCCCGGGTTTTCTGCACGACCGGAGGTTCGCTGCAAAACACCCCGCCAGCGCGTCCCTCTTGCCCTCCCCCACCAGCGCCTTTACCGTGGG # Right flank : CATCCGGCGGCATGGCGCGCGGCGGCGTCGAGGCGGTTCTGCGAGAGGTGCGAGTGATCAACGGCGCGAGGATGGAGTGGCCGCCGGCCCTCGCCCTCATCGCTCCTACGCAATCGTCCTATGAGGTGACAATGTCACCGTTCACCATCATGCTGATCAGGGCCTGATAGAGAGGGCGAGGGCAGTCGCACTGCTGTTCCCCTGGAGGTCGCAACTGTCCACGTAATCCGCGAAGTCGGCGGCGTCCAGCGCGGCCGTAGCCGAAACGCTCGGGTAGTACTCCGCGATGCGCTCGGCCGGCACACCGTCGCGCAGCAGCTCAGCGATCTCGTCGTACGGAACCCGGGTTCCGTCGATCACCGGCATCCCGCCACGGATCGACGGGTCGACGGTGACGTGTTGCCGAGGGCGAAGCAGATCGGGGATGTGGCGCCCATCGCGATAAAAGGGCCGAAGGACGTCGACCAGTTCGTGGATGACGATGTTGGCCTTACGGTGCA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 90225-89930 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOU01000024.1 Sphaerisporangium rufum strain NBRC 109079 sequence024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 90224 31 100.0 34 ............................... TTCGCATCGACTGGGCCGGCCACTTCCGTCCCGA 90159 31 100.0 35 ............................... GGGCTGCTGGTCATCGGCACGGTGGACGAAAAGAT 90093 31 100.0 35 ............................... ACCCCGGGCATCCAGACCTACACGGGGCTGTCGGC 90027 31 96.8 36 ..............................A CGACACCAGACGCCTGGGCAGGCTCCTCGGCATCAC 89960 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 5 31 99.4 35 GTTGCGACCCCTCGTAGGGGCGATGAGGACC # Left flank : CGTCATCGCTCAGCGTCTTGTAGGTGAACAGCGCGCGCTCGATAGGACCTACACCGACCCGGCCAGGCTCCTGACTCTCCCGCGGGCTCTCCCCGAGCAGCACGGCGGTACGGACGCCGAGCGCCTTGGCGATCTCACGGAGCAGGGGCAGCGAGGGGATTCTCTTGCCCTGCTCGATGAGCTCGATATGGCGAACGGTGCAGCCGGCCCGCGCGGCCAACGCGGTGGTGCTCATGCCCATCCGCTGCCGCTGAAGACGAATCATGTTGCCGGTGTTGTTGTCGCCCATAAGCCCCGCACCTCCTGAGACCTCGACACTCTCAGGCTAGGTGCAGGGCGTCTTGTTGTCTCGGGCCTTGGACATGCCATACGGCACGAGTGACCGAATAAGAAATACAGCCGATCGGGGACACGGCATTTGTCGGGTTGATTCACCGATAGGACCCGGGCAGGGGCGATGAAGACCTCCTCGCCATCAGCATCATCTCGTGAGGCGCTCG # Right flank : CCACGGTAAAGGCGCAGGTGGGGAACGGCAAGATGGACGCGGTAGAGCCGGTTTTGCAGTGAACCTCCGGTCGTGCGGAGAACCCGGGGGGTCTGCTGCAGAAACATGATCGTTCGCCCCGCTGTAGCCGTTAGATTATGTCGCTCGGGGCGGGTTGCGGGACGCCCCATTCCTGGCGTTCCGGGGTGGTGCCGGGTGGGAAGGTGAAGACGAGGACGCTGTCGTAGCCGGCGTCGATGACGCCTTCGACGCCGTGACGGAAGCGGCGTAGCTGGGCCGGGCTGAGGGCGCCCTCGAAGACACTGCGCTGCACGTGGTGAAGGTACTGGCGGCAGAGCCGCAGGATCGCGGCGTTGCGTTCGGCGAGGGTGTCGTAGACCACCACCACATACACCGACGATCACCACCAGATCTTGAAGGGCTTGTACGGGGTGCCTTCCAGGCAGGTGCGGGTGAGCTGGAGTGCCTCCAGGTACAGCAGCTCGTCGTAGGCGACGTTC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGACCCCTCGTAGGGGCGATGAGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 100167-100596 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOU01000024.1 Sphaerisporangium rufum strain NBRC 109079 sequence024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 100167 30 100.0 37 .............................. GCCTGTACGGGGTGCCGGCCGTCGCGAAGTACGTCCA 100234 30 100.0 37 .............................. AGCGCTGGGGAGGCGCCGACGATGAGTGATGACCTGC 100301 30 100.0 34 .............................. CGATGTGCTGGCCGTGGTAGATGTGGGTTTCGTC 100365 30 100.0 38 .............................. GCGGTGACGGTGGGCCCGTCGACCACCGCGGCGTCCGG 100433 30 100.0 39 .............................. TACGACAGCTCGCCGGCCGCGACGCGCGTCTTGAGCTGC 100502 30 96.7 35 ............................G. TTCCAGAGCGTCCCCTTGGGCTGCAGTATGTTCCA 100567 30 83.3 0 ...T.......T.............AA..T | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 97.1 37 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : AACCCTCCGCAGACCCCAGAGGAGCTGCTGATCGAAGCGGAAGATCAGTCCGACGCCCGTCACGCCGTCACCAAGCTCATCCAGGGCTCGGAAGGCACCGTGTACCGCGCCCTCCTGACACGGATCTGCGCCGCCGACACCCGAGGCGGCGAGGGCGTCGTCCCGTGGACGGCGCGCACCTTCTCCTACGACGAAGCGAAGGCCGCCACCTTCGTCCGGGCCCATGTCCACCTCGCCGTCCAGGCCGGCCTCGACTGGACCGAGACCCAGACCTCGGCGACACCCCGCCGCCGGACCTCCCGTCCGGAGCCCGCGGCATGCGAACCGTCATAGCGGGGTCGGAGGGACACCAACAGGAACACGTAAGGCCCGTCGCGACGCCTTTATGATTATGGAATTGCAGCGAACCTCCGGGGTATTCTGCACAACCGGAGGTCCACTGCAAAACACCGCCGCCCAACCCCATCGCAAGGCGCCCCAACCAGGTTCTTTACCCTGGG # Right flank : TTCTGCTGCCGTCCGGCTCGTTGGCTAGATCCAATTGTCGGTGAGGGCTGCCAGGATGGGGGACCATGATGGACACCTGCTCCGGGCGGACCGATGTCGCGTCCGTGCACGTCGGCGCGGACGACAACCTGCTCGTCGTCCCGCACATTCTGCCCCTGCGGGTGCCGCGTGAGGCGTTGACGCTGACCGTCGCCGAATGGTTGGGCATTACGCACACCCCGTGAAAGCGGGCGTCCCGCAGGGCATGGCTGGTCGGCCGTGCCGGGGCACCGGCGGCGGGGGCTGAAATTTACAAATGGCGGTTCGGTGGTCTCGGGCTGCTACCAGGGCGAATGCTGCCCGGCTGAAGGGTTCGCGGCTCTTACGTTAAGGCGTTGTTGACCGGTTAACCGGAGATGCCCGTACTTTCGTGGCGAATCCTTACGCGAGGCCGATCGGTCGCCGTCCCGGGGCCGGCGGAGAGACTCCGCAATGTCCGGTGCCGTCCGGTCCCGCATGCC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //