Array 1 255727-257137 **** Predicted by CRISPRDetect 2.4 *** >NZ_UTKO01000112.1 Pseudomonas viridiflava isolate p1.E6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 255727 28 100.0 32 ............................ ACCGAAACCACCACCTCCGGCAGATGTAAATC 255787 28 100.0 33 ............................ GCCATAGAAAAATTCTGCGCGGCTATTCATGTA 255848 28 100.0 32 ............................ ACGCGAGCACCAGAACCGGCAAAGGTCATCGG 255908 28 100.0 32 ............................ AATCATCAGAAATGCAGCAAGGCCCGGCAGGC 255968 28 100.0 32 ............................ CCGACAATTGAAGAGGTGGCGTTCGACTGGGG 256028 28 100.0 32 ............................ TGCCTCGTCCGCGTCTGCCCCGGCGTCTTCAC 256088 28 100.0 32 ............................ GCCGCCTGCATTACCTTTTTCATCTTCATCAC 256148 28 100.0 32 ............................ TTCGGGCAACTCCTGCCAACCTTTAACATGAT 256208 28 100.0 32 ............................ ATGGTCAGGCCGTGGCGCGCCAGCATCTTTTC 256268 28 100.0 32 ............................ AGAACCGGCAAAGGTAATCGGCTCGCGCTCGG 256328 28 100.0 32 ............................ ACGATCGATGCTACGGTCACCCCCATGGCCAG 256388 28 100.0 32 ............................ CGGATCTGTTCGCCGGAAGCACCGGCGCCGGA 256448 28 100.0 32 ............................ TTTTGGGCGTTATCGCTCATTGCTCGCCCGCC 256508 28 100.0 32 ............................ AGCGGTATGACCCGGCGAATGACTGGGCTACT 256568 28 100.0 32 ............................ AGGACAAACTCGATCGGATCTTCCAGGGTAGT 256628 28 100.0 32 ............................ AGGATGAACCCCCAGTTGCAGTTGCTAGCTCA 256688 28 100.0 32 ............................ TGTTCCTGCCCGAACTCTGATTCCGTCAGACG 256748 28 100.0 32 ............................ TGAGCTATGCCTCCTGGCTGACGATCCCTCGC 256808 28 100.0 33 ............................ GCAACTCATTAGATGTTTTGCCTTCGCCTGGAA 256869 28 100.0 32 ............................ TGAGTGGGTCAAACAGCTTGCCCGGCATCGTC 256929 28 100.0 32 ............................ AACTGCAGGCAATGGTTTCGGATCGGTCCACA 256989 28 100.0 32 ............................ TCATGCGGATAATCATCCAACTGAGGACACCC 257049 28 96.4 33 ...............C............ ATGAAGTCGCAGCGAGCAGGGCCGCAAGCAAAA 257110 28 71.4 0 ..C........C.C.....A..T..GGT | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.7 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : GTTTGACGTCGTAACGCACCCCGGTGACCTTTACACCCTGTGCGCGGCACGGCTCGCTTGAGCACAGAAATTCGAAGCGGGTGCGGGGTGGTTCCTGTGAAAAGTATTCACGCCGCGCAGCGACAATCGACAGCTCCTGCTGCAGTTCGACACAAAAGGCGCGGGTGATGGGCTTTGTGGGTTTCATACGATACATCCCTGATGCCGTGTGCGTTGACAGCTTACTGGTTCTCGATATGGGACAAGTGATTTCAAGAGATGATGCATTGAGAGCGAGGGGAGGATAGGCGTTTGATTGCCGGTGCCTGTATCAGGCGTCTTGGGCCTCTGGAGTGAGTGGGTTGGTCAACGGCATTTTTGGCGGGTAAGACCCTCTTTTTTGGGATAAAAGCTTGGCCCATATAAATCAAAGGGTTAGGCGTGTAACAGAAAAAAGGGTTAATTAGATGAAAAGGAGTATTTTTTCTTTTAAAACGAGAGGTTGTCGAGCAAAGTGTCTA # Right flank : TGTGCCGACCGGATGAAGGTGGCAGCGTATGAAGCAATATTCATACACCGCCCCATCCTTTACTGAATCACACCACATGCCGCACGATCGCCGCCACCGCCCAAGGGTTTGGGGTGGTCCGAGTGGTTATCGCCGCCTGCATGAATCATCAGTGCGTGTCCCTTGATTTGCGAGAGCTCTTTAATGCGGGGTGCCAGCACCGGGTAGTCGGCCGTGCCGTCTGCGTTCACGTAGATTGCCGGCAAGTCGCCCAAGTGGCCGTCCTTGTCATAAGGTCCCAGATGCTTTCCGGTCTTCTCTGGATCGAAGTGACCGCCTGCCGCCAGCGCGGCAACTTTGGCGCCGTCTTTAGTGCCAGCATCGCAACTGCCATTTTCGTGCACGTGAAAGCCATGCACTCCAGGCGGCAGCCCGGTCAGTTTTGGCGTGAAAACCAAGCCATAAGCCGTTTCTTCGATATTGACGCTACCAATCGATTTCGGCGCTCCGTCGGCACTGAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 260196-258724 **** Predicted by CRISPRDetect 2.4 *** >NZ_UTKO01000112.1 Pseudomonas viridiflava isolate p1.E6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 260195 28 100.0 32 ............................ CGCTGGACCCCAAACTTGTGGCTGAGTCATGC 260135 28 100.0 32 ............................ TGGTCGTTTTCCCCGATCGGGGTAGACCTTTG 260075 28 100.0 32 ............................ GCCCGGGCGCGCTCTGCCTTGCTCGGCTTGTC 260015 28 100.0 32 ............................ AGGTTTCGATGCCGCCTTTTTCCATCCAAGGT 259955 28 100.0 32 ............................ CACTCGATACACCGAGCAATTATCCAGCGCGT 259895 28 100.0 32 ............................ TCCAGGGCCGCTAGTACCACCTCCACCACCGC 259835 28 100.0 32 ............................ GAGTTGCAGCAAGGCGTCACGCTCGGACAGCC 259775 28 100.0 33 ............................ ACGCTGCGCGCCTGCCCGATAAGCGTGCTGAAC 259714 28 100.0 32 ............................ CAAGATCCCACGGCAACCACAGCGCCTGCTCG 259654 28 100.0 32 ............................ TCGATTTCGGCTTCAAGATTGCCGGTGATAAC 259594 28 100.0 32 ............................ CTCAAACACGGCGAGTTCCATCAGATCACGGA 259534 28 100.0 32 ............................ GGTGAGAGACGACGAATGAAACACGACTTCCG 259474 28 100.0 32 ............................ ATCGAGAAGGCGCAAAGCCAGTTATATAGGGG 259414 28 100.0 32 ............................ TCTGTGCGTGGCCTAACCTCAAGCGGTGGAAT 259354 28 100.0 33 ............................ ATCGATCCGCTTCGACTCTGCCGTCAGTGTCTT 259293 28 100.0 32 ............................ ATAACCTTGGCAGCTCGGCTTCGGATCTGGAG 259233 28 100.0 32 ............................ ACACAGGAGCGTCCAGCGCGGCCACCACGGCC 259173 28 100.0 32 ............................ AGTCTGTGAGGGTGATGTTTTCTCATGCGCCA 259113 28 100.0 32 ............................ AAAGACAAGGCAATGGCAAAACCAATGATTAC 259053 28 96.4 32 ...............T............ GCTGAGAATGCGTGCAGCGCTTAAATAAGCAG 258993 28 100.0 32 ............................ TCACCAACGGTCTGCCAGCCGTCGACCGTGGC 258933 28 96.4 32 ..........................G. GCTCCCGGCCGGCACAGCCGCGGCACTGGCGC A [258929] 258872 28 100.0 32 ............................ ATGCTGCTGGGGATATGGCTGTTGATCTTGTC 258812 28 92.9 33 ............AC.............. GGTGTTGAGCGGCACGGTCACACACTGATGCGA 258751 28 89.3 0 ................A.....T.A... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.0 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGGCACTCGATACCCTGCTGGCGCTGAACTGGCTTACGGGGATGCGCGATCATGTGCGGCTGGGCGATCTGAGCAGCGTCCCGCCTGATACTCGCTACCGCGTTGTCAGCCGCGTGCAAACAGACAGCAGCCCTGAGCGCACGCGGCGTCGCCTGATCAAGCGTCATGGCATCACAGAAGAACAGGCCCGCGAGCGCATTCCAGACCATGCGGCCAAGCGTTGTAACCTGCCCTTTGCACAACTGCGCAGCCAGACCACCGGCCAGCATTTTCGCCTGTTCATTCGGCATGGGCCGTTGCTGGACAAGCCTGAACATGGAGCTTTCAACGGCTTCGGCCTGAGCAGCCGTGCAACCGTTCCCTGGTTCTGACCCTCTTTTTCGTAAAGCAAAAGGCCGCTTGTGAAATCAAGGTGTTACGAGCGGTCTTGGAAAAAGGGTTTGAGATGGGTAAGTAGGTATTTTGTTTTTGAAACAAAGCGTTATGAGGGAAAGGCTCTA # Right flank : TAGAGTTACAGCGTAGCTGCAATGCAGCTCCTTTACTGCCGCACGGGCAGCTTTTACTTGCGTCATCCCATCCTTTCATTCTGTACAGACCGCATTAGAGAGGCTACGCGTACAACTCCTCTAGAGCTGTGAGCTCTTGCTCAATAACACTCAGCAAAGCCTCCCATTGTGCTTGAGTACATTGCTGTCCCCCTTTGGCACTGTAAAGAAAATCGACAATTCCTGAGCTGACTCGATCTTTATTGGTCTTCTCGAAAATCTGACGAGTCAATGCATGGACAAGCATATCCAGCTCAGATGCATAATTGATCCACCGCCAGTTGTGCCTCAACACGACTTTATCAATCAGCATGCACTGTTTCCTGAATGCTCGTATGGCCAGGCCTAGAGAGCTGGTACTGAGCTGGGCATTGAGCCGCTCACTGTCAGAGCCCGCTCTTTGTTCCGCATCAGGACCAAAAAACCACTCGCTGAAACCAATTTCGATCTCACGAAAGGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 269283-270321 **** Predicted by CRISPRDetect 2.4 *** >NZ_UTKO01000112.1 Pseudomonas viridiflava isolate p1.E6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 269283 28 100.0 32 ............................ TGCGACCTAAAGGTCTACCCCGAGTTGCTGCA 269343 28 100.0 32 ............................ GACGTGGACGCCTATCACTCGTTCACCCGCCT 269403 28 100.0 32 ............................ GTCGTCTGTACTCGGTCAAACTGGTGAGTAAA 269463 28 100.0 32 ............................ AATGCAAAAACCGCCGGGCAAAGCCGGCGGTA 269523 28 100.0 32 ............................ ATTTGGGCATATCGTAAACCGGGCATAAGTTC 269583 28 100.0 32 ............................ TGCCGCGCCATCGTAGCCGCGAAACTGGGCAA 269643 28 100.0 32 ............................ TCGGCCGTGTCGCGGTACGCCTGCGTGAACTC 269703 28 100.0 33 ............................ AGTTGGATCCGGTCTGCCATTTCCTCGTACTTC 269764 28 100.0 32 ............................ AGTGAGGTCGGTCGGGCGCAACGTGAGGCTGA 269824 28 100.0 32 ............................ ACGCTCGGCGCCGAACTGGACCAGGTCACGTT 269884 28 100.0 32 ............................ ATAAAAAAGGCCGCCCCGGCGGCGTTGTACCG 269944 28 100.0 32 ............................ GCCAAGTTCGCCGAGGAAAACCGGGCAGAACT 270004 28 100.0 32 ............................ TGTATGCGGCCACGAATGGGGAGTCTGTTGCG 270064 28 96.4 23 ....C....................... AGGCGACGCAAGTGGCGGGCACG Deletion [270115] 270115 28 100.0 32 ............................ CTGACACTGAAAAAGGCAGCCAGTACAAACAC 270175 28 92.9 32 ...........C.C.............. GGTTACCCACTGGTGACCAGCGAAGCCCTGAC 270235 28 89.3 31 ...T...T..............T..... AGATCCTGTGCTTCTGGAGTGAATCGCCCCT 270294 28 78.6 0 T..G.......CA.G...T......... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 97.6 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCGCAAAACCCAACCAGTACACCGGCCTTGGCCAGCTCACGCATGGCGGCCTGAGTCACGGAGGTTCCCGTGCCCAGCAAGACGGTTGTGGTATTGGCAATGGGGATATTCCAATACAGCGACTGTTTGCCTGCATCGGTCACATACTCGACCCGTCCCCCGTTGACCAGCACACGGCAATGCTGCAGGTAATAGATATTGGCGCGCTTGGAATGCAGGATCGTTTTGAGATCCGAGGCTTTGATGTCGTCCATGAGTCATCACTGCTCTTGTAGATAGTCCTTGAGACGCGGGTTATAGCGGAAAGTGATGGCGGTGAGCTATGAGTATTTCTGAAAAGAGTAAGAGGATTTGAGCAGAGTGCGTTGACCCCTTTTTTTGGGTCATCAGGGAGGTGTAATGAAATCAATCGGTTACGCAGGGGGGTGAAAAAAAGGGTGAAATGCTTGTTAGCGGGATATTTTTCTTTAGAAACGAGAGGTTATCCAGCAAAGTGTCTA # Right flank : ATGCAAGACGGTCCCGGCGTGGTTGCCTGCGCTCGACACTATCTTGCAGGTAGCAAAAGTCTTGGCGAGCTTCCAGGTGCAATCGATTTTCTTAAGCAGACAAATGCTCAAACAGAATCGTCGCCCCCACGATCATCAACACCACCCCACCCGCAATCTCGGCCCGCTTGCCAACCATCGTCCCCAGCACCCGACCCAGCATCACTCCGATCGTCACCATGATCATGGTGGCCAAACCAATAGCCGCTGCCGCTACCACAATATTCACATCGACAAACGCCAGGCCAACACCGACAGCCAGCGCATCGATGCTCGTCGCAAAGGCCGTGACGGCCAGTACAAGAAACGAATGCTGGCTGGTCTTCTCCTGCTCCTCATCCTCGTCTTTCACGCCGTTGTAGATCATGTGCAGGCCCAGGGCGATCAGCAGCGTGAAGGCGATCCAGTGATCCCAGTCCGCGACCCAGGCGGTGGCAGCCTGGCCGATCGTCCAGCCGACA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //