Array 1 214892-213544 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDL01000004.1 Pectobacterium brasiliense strain F157 F157LOC_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 214891 28 100.0 32 ............................ CATACGCTACATAGGTATTTTTGCGTATCTCG 214831 28 100.0 32 ............................ AGCATCCCCAGCAGTGCAATTAATGCAGATAA 214771 28 100.0 32 ............................ TGAGCCTGTTGCCAAACGTGTTGGATGTCAAT 214711 28 100.0 32 ............................ ACTTGAAAAGATGGTTTAGAACTATAGATTCT 214651 28 100.0 32 ............................ TCCCGCTCCGGTGATAATTCCACGTTTGTAAT 214591 28 100.0 32 ............................ AAGTTGTCAGCAATGGAAGACGGTGGGACGCG 214531 28 100.0 32 ............................ CGGATATACTCATGCAGGTAAACCAGCTTTGC 214471 28 100.0 32 ............................ AGCACAGATTCCTGATTTTGCCGCGTGTAATT 214411 28 100.0 32 ............................ TGTATTCCGACGACCCCTACACGCGCATTCCC 214351 28 100.0 32 ............................ CGAGTCGCGCCGTTGAGGTGAGTTATTTCGGA 214291 28 100.0 32 ............................ AACTGTTCGCGCTGATCACTCCTGCGGCAGAG 214231 28 96.4 32 ...........C................ TCACAGGCCAAGCAGGCCGTACGAAAATACAA 214171 28 96.4 32 ...........C................ AGTCATCTGTAAAGGCTGCTTCAACGCCACCC 214111 28 96.4 32 ...........C................ TTAAGACTGGCGCGTTCTTCGCACAGAAAGAT 214051 28 96.4 32 ...........C................ AGCGAATCAAACTGCTGGGATTTTAACGGGGT 213991 28 96.4 32 ............G............... GGATCATGCTCAACACTCGTGGCGTAGTAGCA 213931 28 100.0 32 ............................ TGCGCTGGCGCTCATCAGCGTTATGCCTCTTT 213871 28 89.3 32 ...........C.C......A....... TCATCATCGCACGTCGCGCTAACTTACTGTTT 213811 28 92.9 32 ...T........G............... AATGTTCCAGTGATTTGAGAGGAACTCCTTCG 213751 28 92.9 32 ...........C.C.............. ATCAATGGTGTATTGTTTGAGGGCATCACGGA 213691 28 96.4 32 ...........C................ GGAGGGATTAGCTAATGGGCTGGATTAAGTGC 213631 28 96.4 32 ....................T....... GGCTTCTCCGCCGCCTCACGGCGCTGTAGTAG 213571 28 78.6 0 ............GC......T.C..TG. | ========== ====== ====== ====== ============================ ================================ ================== 23 28 96.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCACTCTCTACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAATGTAAAACCGTACCTGACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGTTCAAGAGCAGCGCTGAACGATTGCGCCGACGCTCGGTGAACAAAGGCTGGCTAACGGAAGCAGAAGCCGCAGCACGCATTCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGTCAGATGTTCTTCGTGTTTGTGGAACATGGCCCGCTACAGGATGCACCTATCGCCGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCATTCCTTGGTTCTAACCCTTTTTTGGCGACCAGCTGCAAGTCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGTTTTTTCGCGATAAAATGAGTATTCTCTTTAATAATCTGGTGGTTAGCGTAAAAACCTAACA # Right flank : TTATCGAAATGCGTCGCTGGCGCGACGCATTCTTGAGGACTATTCCCCGTTGAGTGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTTAGACTGTTGCCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCACTACCTTCATATGTATGGCGGTAGTACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCAGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGCC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 223459-224625 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDL01000004.1 Pectobacterium brasiliense strain F157 F157LOC_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 223459 28 100.0 32 ............................ ATGAGCGCTATAATGGCCGTAAAGTTTTCGAC 223519 28 100.0 32 ............................ AGTGAAATCAGCGACGTTAGCAGTATCGTTAA 223579 28 100.0 32 ............................ GCCAGATAGCGCCTGGGTAGTCCCGTATGCGC 223639 28 100.0 32 ............................ CATTCCTCGCAACAGATTGCTTGCGGCGCGTT 223699 28 100.0 32 ............................ AGTAGCGAACGCCGCCGACAACGACGCTCTCG 223759 28 100.0 32 ............................ TTTCTGTGATGATTTTCAATTTCATGGGCATT 223819 28 100.0 32 ............................ AGCCCATTTTAGACATAGCACGAATAAACATC 223879 28 100.0 32 ............................ TATCCCCGTAACGAGCTTCCATCCGGCACGTT 223939 28 100.0 32 ............................ AATACGATAAGCTCTATCAGGTTCCAGTACTC 223999 28 100.0 32 ............................ TCTGGGGCGCTGTACCAGTTTTCTGAACGCTC 224059 28 100.0 32 ............................ AGCGGCGGCATGCTTGAGTTTGACGATTACGA 224119 28 100.0 32 ............................ AGATTCAGCGCCGAGCACGTATTCAACGTAAA 224179 28 100.0 32 ............................ TGCCGCCGCTAACGTCGTTGGCATTCGTTAAT 224239 28 100.0 32 ............................ TTTCCGCATCACTGAGTAACTCGGGGTATTGC 224299 28 100.0 32 ............................ ACGGGGATTAAGTATCAGTGAGATAGACCGTA 224359 28 100.0 32 ............................ ATGTCAGTGAATATAAAATCGAGCCAGAGTTT 224419 28 100.0 32 ............................ GTACTGCGACGTAACAGTCAGGTACTGGTTCA 224479 28 100.0 32 ............................ CGTTGAACATCGTCACGGTGCTATCCAGAACG 224539 28 85.7 31 .........T.T.C..........T... CAAAGAATTGTCGGGTGTGGTTGCGGCCGTC 224598 28 78.6 0 ...........T.C......T...TCC. | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.2 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GCGTGACAGAGGTGCCGGTCCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAATTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGTAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGATTAATAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : ACGCCTTAAGTGCCATTATCTGGCTATTATCGAGGTAACACTATCGGCAGGTTTTGATGCGTTATCGCCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAATAACGGGTTTCTTTATGGGGAATGAAAAATTGCGGGTTGAACGTTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTGCCTTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTACAGACGTTATGCACCCCAAATCCCAATCAATCGTGGAAAACGGCCATATTTGGCTGTACCGATCCTGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //