Array 1 2858778-2857970 **** Predicted by CRISPRDetect 2.4 *** >NC_012962.1 Photorhabdus asymbiotica, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2858777 28 100.0 32 ............................ AAAGAAAACATATGGCTATTTCTCTGCCGAAA 2858717 28 100.0 32 ............................ GTTGCTGAACAAGCGGGAACCGTGTTCCTCGG 2858657 28 100.0 32 ............................ TCCAAGTGTTGAAGCGCAATCAGAACTGAATA 2858597 28 100.0 32 ............................ GAGAGCACTCAGACGCGCCGGTATTTGCTAGA 2858537 28 100.0 32 ............................ AGAAATCACCAGTAGTTTCTATGGATAAATCA 2858477 28 100.0 32 ............................ AGCGTTTGTTTTCAACAACTGGGGCTGGAGCA 2858417 28 100.0 32 ............................ CTCGGCAAGCATGCTCACGCCGTCATAGTCGG 2858357 28 100.0 32 ............................ TGGCTGTCAGATCCGAACTCGCTATAGACTCC 2858297 28 100.0 32 ............................ TGAATAATGCGTCCTTTTCTTTTGAAAAATTA 2858237 28 100.0 32 ............................ TTCACTAGTTGACTTAGGCATAACACATCGTT 2858177 28 100.0 32 ............................ AATTTAACAGCATCACCTGGTTTTACACATAA 2858117 28 100.0 32 ............................ TGGATTGCTTAGTTGATGATAAAGGGCAGCTT 2858057 28 100.0 32 ............................ ATTTGACCCCTTGGTACCAAATGAAACGACAA 2857997 28 78.6 0 ....................T..TCGCG | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTTGGGATATTCTCTTGGTGAAAAATGGCAGGGAAAAGGGCTGATGTATGAGGCTTTACAGCCAGCTATCCGTTATATGCAACGTCAGCAGGGAATGCATCGAATTATGGCTAATTATATGCCGAATAATCATCGTAGTGGAAAATTATTGGAACGATTGGGTTTTGAGCGAGAAGGCTATGCCAAAAAATACCTGATGATCAATGGAGTCTGGCAGGATCATGTATTAACGGCATTGACAGATGAAAAGTGGAGTGGAAAGAGTTGATTACTAAGCTGTACTGTCACCAGATAAAGTAAAGCGGATTAGTAATGATGAATTAAATGACTGTTGAAAATCTACCAGATTCCCCGCGCCTTATTTTTGACCCTTTTTTAAGGAGCGATTTTAATTTATTGATTTTCAATGGAATATTATTTCTCTTGTAAAAAAGGGTTTTTTCGTTGTTTTATTAAAATATACTTTAACCGTCAGTAGGTTAGGGGTAATATGCAACA # Right flank : TCATTGTGACTCAATCGTGATATAACGACTTGCATAAACAGGGCCTTAGGGCCCTTTTATCGTTTTAAATGGTGAGGTAATTTATTGATGTGTTTTATGATATGTAGTGTTTTGTCGCAGAGATTTTGCGCTAATTTTCATTTATATTATTGATTTAAAATCAATTAGTATGATTTTGAGATAAATACGATGAATTTATTGAAGTCGCTGGCTGCTGTCAGCTCTATGACTATGTTTTCCCGGGTGCTGGGATTTATCCGCGATGCCATTATTGCCCGTATATTTGGCGCCGGCGCGGCATCGGATGCCTTTTTTGTTGCATTTAAATTACCTAATTTATTGCGCCGTATATTTGCGGAAGGGGCATTTTCTCAGGCATTTGTGCCTATTTTGGCAGAATATAAAAATCAACAGGGTGATGAAGCCACCCGGACGTTTATTGCCTATATTTCCGGTATGCTGACGTTAGTCTTGGCGATTGTTACCGTGCTGGGTATTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3127848-3127340 **** Predicted by CRISPRDetect 2.4 *** >NC_012962.1 Photorhabdus asymbiotica, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3127847 28 100.0 32 ............................ TCAAACGAAACCCGCGCTTGTGCCGCAGCCAC 3127787 28 100.0 32 ............................ TTTTCAATCAAGACATTCCGCAACGAGCCGGA 3127727 28 100.0 32 ............................ TGCATACTCCAATACTTCATCAACAAGTAGCT 3127667 28 100.0 32 ............................ GGCCGTCGCAGTAAACCCTGATATGACTGCGC 3127607 28 100.0 32 ............................ AGGGGTATAAAATCGAGGCTTTATAAAATGAA 3127547 28 100.0 32 ............................ AAGAAAAAAACAGAGACCCGCCCCTCGCGGGT 3127487 28 100.0 32 ............................ CGAATCGACGTAACAAATCTCGTAGGTTTGAG 3127427 28 100.0 32 ............................ GGGGGGCACACGGTGGCAGGGGCAGCGCTAAA 3127367 28 78.6 0 ...........T.........AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGCATTGAATGACTTGCAAGCATTACCTTGGTTAAAAGGACTCAGGGATTATACTGAGATTATGGATATCCAACCAGTGCCTCAAGATACTCAATATCGTCGTGTTAGTCGGGTACAGGTTAAAAGCAGTGCGGAACGGCTTCGTCGTCGTTCGATTAAAAAAGGGTGGTTAACGGAGGAACAGGCTCGGCAGCGTATTCCAATAAGCAAAGAGCAACGTACTCATTTACCTTTTTTGCTTGTTAAGAGTTTGTCATCAAGGCAAACCTTTCCATTGTTTATCGAACAGGGACCAATAGAAGATAAGCCAACACCGGGAGTTTTTAGCTCTTATGGATTAAGTGCATCAGCTACCATTCCTTGGTTTTGACCCTTTTTTAGCGGTTAATCATAACTTATTGATTTATTTAAGGGATTAGCCGCTACTAATAAAAAGGGTTTTTCCACTTTTTATAACTATGCTCTTTAATAATCAGTCGGTTAGAATTAATTCTTAACA # Right flank : TCAATTGAGTGCGCTAAATGCTTCCGCTTAAATATGCATCATTTATTGTGCTTATGAGCATATTCTTCACTATTAACCCATTGGTGATCTTTTTCCCAAGTAAATAGCCATTTGCGGGTTGGTCCGGCCATGACATTGAGATAATAGTTGTCATAACCGGCAATGGTTGCCACTGGATGGTAGCCTTTGGGAACCATCACCACATCCTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCAGTATAGACGCGTTGCATACAAAATCCTTGAGATGGGTTTAGACGATGGTAATAGGTTTCCTCCAGATAGGTTTCTTGTGGTTCATCGTCTGTATCGTGTTTATGGCTGGGATAGGAACTGGTACAACCTTCGTCGGTAAAGACTTCTACCACCAATAAGCTATCAGCAGGTTTACTGTCTGGTAGGATGTTGTGAACATAGCGCTGGTTGTAACCATTTCCCCGTTGTTCTGCATCAATATCCTGTGGTGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3133690-3133242 **** Predicted by CRISPRDetect 2.4 *** >NC_012962.1 Photorhabdus asymbiotica, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3133689 28 100.0 32 ............................ ATCATCATGTTTAGCCATGAAGTGACCTAAGC 3133629 28 100.0 32 ............................ TACAGCCGGTCTCGTAACATTGACTAACGTAG 3133569 28 100.0 32 ............................ AAATCCATCTGACAAAAGAATGTCATAGAAAA 3133509 28 100.0 32 ............................ GTCAATTGGATGCGTTACTCTGACAAGAGGCT 3133449 28 100.0 32 ............................ AGTCAGTTGGTGAAATAGCTACAGGTCTAAAA 3133389 28 100.0 32 ............................ AGCGCCGCAATTGAAGATGAATGAACATAGCG 3133329 28 100.0 32 ............................ AGAGCTGAGATTTGATGAAGATAATGTTCATA 3133269 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTGTACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAAATAGCTCTAATTGGGATAGTAAAAAGAGTAATGAATTATTTAAAGGAATTCTAATTATTATTTTTAGAGCAATAATATTACATTTATTGCTTTAATCCAGAGTAATTTAATTATATTTTCATATAGGAATTATACAAGAATGGAGTGAAATATGATGTATTCAGTTAACGTTGTTCAATATCACACGTTGGTAAATGCACTTAAAAATATTAGGTCAGAATATTCTAAATAGAGTGAGTGTAAAGTTTATCTTATTTGATGATTATGTCATTATTGAGTGTTTTATATGCAATTCTTTCACTTGTTGTATAGATATTAGAACTGGTGATTTAAGTGTGTGATGGTATTTTTGCTAAACCCTATTTTTACCCTTTTTTTGAGGTGAATTATAACTAATTGATTTTATAGTAAAATTAATTATCCCTTATAAAAAGGGTTTTTCACTTTTTAACAGTTATGCTATTTGAAAATCAACAGGTTAGAGTTAATATGTAACA # Right flank : ATAATTATTCTCTTCGGTAAAGGCTCTATGACTGTAAATTAGTAAAGAATTGTAAATTATTTTAATTTACATGTGCGATATTTCACCTTGTGTAAAATCTATGCATAATGTTTGCCATAAGTAAAATTAATTTAGGTAATGCTTATTATGGATAACAGCTTTTCTCCAAGTGATCTCAAAACGATTTTGCATTCCAAACGCTCTAATATTTATTACCTGCAATATTGCAGAGTATTGGTTAATGGTGGCCGTGTTGAATATGTCACTGATGAGGGAAAACAATCACTATATTGGAATATTCCAATTGCAAATACCACGGTAATTATGCTGGGAACGGGGACTTCTATTACCCAGGCGGCAATGCGTGAATTTGCTAAAGCAGGTGTTTTGGTTGGTTTTTGTGGTGGTGGCGGTACACCCCTGTTTGCGGCTAATGAAGTTGAAGTGGATGTATCTTGGCTGACACCACAAAGTGAATATCGTCCTACTGAATATTTACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3154157-3153228 **** Predicted by CRISPRDetect 2.4 *** >NC_012962.1 Photorhabdus asymbiotica, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3154156 28 100.0 32 ............................ CTATGGCTGGCTATGCAACAGCGTACAGATCC 3154096 28 100.0 32 ............................ TGATGCGCCAAAGCTTCCCGATTCTGATGATG 3154036 28 100.0 33 ............................ ATACACATTTAATTCTATCTGAGGATGATTCAT 3153975 28 100.0 32 ............................ AATATTTGAGACATACTTATCGACCTCGCTCT 3153915 28 100.0 32 ............................ TTTTGCTTGACCGTTACTATATTTCAAAGCAT 3153855 28 100.0 32 ............................ AAAGTAGCAATCAATATATTGAGTTAATGTTA 3153795 28 100.0 32 ............................ AAAGTAGCAATCAATATATTGAGTTAATGTTA 3153735 28 100.0 32 ............................ ATAACAAAATTCATCATCATGGATATGTGCTT 3153675 28 100.0 32 ............................ GAAAAATAGCGCCTTTTTCTGGATCAAATACA 3153615 28 100.0 32 ............................ TTTTTGCTGACGTGTTCGTCAAATTCTTTTAT 3153555 28 100.0 32 ............................ AGAGAAGTTGCATTGATTAAAAGTGATAACGA 3153495 28 100.0 32 ............................ TCGTATTAACGGGGTTTTTTCATTTTCGCCGC 3153435 28 100.0 32 ............................ ATGCCAACGAACGCCCGAACGTATGATCGGAA 3153375 28 100.0 32 ............................ ATTCCTGTTTTTAGTAATTCCAAAGAAGCAGA 3153315 28 89.3 32 .........................CTT GGGGTATGGCAAAGTTGTATACAGAAGACTGC 3153255 28 75.0 0 ..GT......A..T..AT.........T | ========== ====== ====== ====== ============================ ================================= ================== 16 28 97.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAATTGGCAGAAAAAGCAGGCATGGATGTTGTGATGGATCGCTGTCCGAAAATTGAAATTCCAAGGTTGGGATTGGAAAAGTAATATCTCCAGCTTGCTACTTGATATCCTGTCAATGAACGAAAGGAGCCTGGCGTTAATATTTAAGTTACCAAACTAAAGAGTTAGATGGGACACTACGTCAGGTTCTGAATATGTAGATCATACCTGAAATGAAAACTTAGCAGAATTCACTGCTCTAAAATCTAATTTATACATTTATTACAATATCTTAAGACGGATTCAGTTATTTCTGTGACTGCTAAATTCTGCCTAAATTTGTACTTACATTGATTAAGATATCGTGTTTCTGCCACATACTGGTTTTTGACCCTTTTTTATAGCGAGATAATAACTTGTTGATTTTAAAGTAAGATAAATTATCTCTTATAAAAAGGGTTTTTTCGCTTTTTGTAACTATAGTCTTTAATAGTCAATAGATTAGCGTTAATATGCAACA # Right flank : ATAATCACTCTCGTTTGGTGAAGGCCCTATTGTAAATTAGTAAAGAATTGTAAATTATTTTGATTTGCATGTGTGATATTTCACCTTGTGTAAAATCTATGCATAATATTTACCATAAGTAAAATTAATTATTTAGGTAATGTTTATTATGGATAACAGCTTTTCTCCAAGTGATCTCAAAACGATTTTGCATTCTAAACGCTCTAAGATCTATTACCGGCAATATTGCAGAGTATTGGTTAATGGTGGCTGTGTTGAATATGTCACTGGTGAGGGAAAACCATCACTGTATTGGAAATTTCGCCAACGCTGCATTAGTGGATTTCAAAAAAGAGATGTATTGGACACCATGATTGATGCTTTGCAAACAACCCCTCAACAACTGAGTCAGGTGGTACGATGAATATTCTCTTGGTATCTCAATGTAACAAACGCGCACTAACAGAAACCCGCCGAATTCTGGATCAATTTGCTGAACGTAAAGGTGATAGAACCTGGCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //