Array 1 129302-130612 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRHY01000001.1 Tyzzerella nexilis strain AM23-10LB AM23-10LB.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 129302 33 100.0 34 ................................. TGTAAAAGATGTAAACATAAATCCATATAATCAT 129369 33 100.0 35 ................................. ATCACTCCACCTCCTGACACTCGTCAAATTCCGGA 129437 33 100.0 35 ................................. AACTTACCTGATAAAGGTGCTCCTCTTGCGGTTCT 129505 33 100.0 33 ................................. TTTATTGCGTGAAGAACCTCAAAAGTTCGTTGA 129571 33 100.0 33 ................................. CAGAATTATATTTTGCAATTTTTTCTCCGTTGA 129637 33 100.0 34 ................................. AGAAAGACAGCTTCCGCTTCGTTCCCGTCCTGCG 129704 33 100.0 33 ................................. TGCAATGGAACGCCTACAGTGAATCAAAAAAAG 129770 33 100.0 35 ................................. CCGCATTTTGTGCACCTGTATCTATAAATACGTCC 129838 33 100.0 33 ................................. AACCGAAATTTAATAAGAAAAACCCACAGAGAA 129904 33 100.0 35 ................................. CGAGGAGTCAGCCGACAAAATGGCTGATGCTTGGG 129972 33 100.0 33 ................................. TATATCGATTGATGATTCCATCTCGGACAATAC 130038 33 100.0 34 ................................. GCAGTACCTTTTACGGACTGCAGTATTTTATATG 130105 33 100.0 35 ................................. ATTTTGTTTTTGCCAATCATCCAACCCTTGGATTC 130173 33 100.0 34 ................................. TTATTGGGAAAAAAGAAAATCTCAGAGAATGTTT 130240 33 100.0 34 ................................. TGCAATGAATCGCATCAGCGAAGAGGAGTACGCC 130307 33 100.0 36 ................................. TTGCAAAACGTCTAATATACAGAAAGCTGTATATAT 130376 33 100.0 34 ................................. TTTATCCCATACTGCATCAGATAGAGCCGTTTGC 130443 33 100.0 36 ................................. TCCTTTACACAATTAACTCAACCATATAGCTTTCAA 130512 33 100.0 35 ................................. AGACAGACCAACTGAGTTAGCCTGTGACATATATT 130580 32 84.8 0 ....................A.-.TG..T.... | T [130599] ========== ====== ====== ====== ================================= ==================================== ================== 20 33 99.2 34 GTCGCTCCCTTCACGGGGAGCGTGGATTGAAAT # Left flank : CAAGAGATCTGAAGTATCTGTGTGAGAATGGGTATGAGCTGAAGAGAGTCAGGGCGGTGGATATGTTTGCGAATACGGTACACGTCGAGACTTGTGTGTTGCTACAACGAAGAGCTATGTAGAAATCCTTAATTTTAGGCACTTTGCGAAGCATTTCGTGTTTTCACCAGAGGGGAAAAATAGTCGCGATAAACACCTCAAAAACTATTTTGATGTTTCGGTGGTTGTTGATATAGGGTGTGGGAACACAACAAATTAAATACTAATTTCAGGGATACTTGTTAAATATCCTACAGAATTTAATTGTCGAAAATATAGAGAGAATATTAAGTGCGAATGTCTAGTAAACATAGATTTTCTATGGGATTCGCACCAAAAAATAGTTCATATTTAGGTTGAATATGAAATTGATAGTGTGATAGACTTGTAATTATAGAGAAAAATTAGTAGAATTAGCAGAAAGTTGAACGATTGTAACAGAAAAATTAGTCAACATTGCT # Right flank : TATTTGAAGATATATAGAGACAGTCTGTCAGACGAAACGGAGATCAAAGACGTAGAAGAATTGTTAAAGTATTATATCAATAATAGAGAAGGTCTGATAGCGTATCAGTCACAAGGATTAAACTTACCGGAACATCCGGATGGATTGGAATACAGAAACATGGGAACTATGGAAAACCACATCTGGAGCGTGATTGCAAAACGAATGAAGCACAGTCATACCTGCTGGAGTAAACGGGAAAATCATCTGGCAAAGATTCTTGCAAAGAAATGCGGTGGAAAGTTATACGAAGTAACAGAAAAGTCAAAGCATGCCATATTCAAGGAAGAGACCGTGGAAGAAATTCTGATGGCAGAGGAAGTGGCTAAAAAAGTAGGAAAAGGATACGAATACCCTACCATAGGTCACATGGTAGGATTAGAGGGTAAAATAATAGGTGAACGCAAGAAACTGTTTGCAATGTCAGGATTTTAGTAAACAACTGTCAGAGAGAATGATAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 139157-139520 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRHY01000001.1 Tyzzerella nexilis strain AM23-10LB AM23-10LB.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 139157 32 100.0 34 ................................ CTCACTGCTCTGTCTGATAAGCGCCTCTGTAATC 139223 32 100.0 36 ................................ TAAATGCCATGATTACTCCTTTCTACATCCAATGCT 139291 32 100.0 34 ................................ GTGCAGGTGTACTTGAATTACTTAAGTGGGACAT 139357 32 100.0 33 ................................ AATAATCAATACTAGCATAGTACCATCTGACTT 139422 32 100.0 35 ................................ ATCTTCTGTCATAGGTCTTGCACGCCACCACTCTT 139489 32 93.8 0 ............T...G............... | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 99.0 35 GTCGCTCCCCTCGTGGAAGCGTGGATTGAAAT # Left flank : CAGGAGAAAGATGAAACAGATGCAGGCATATCTTCAGGAAGTTTTAAAGAGACAATATAGTACAGAAGGATTTAAGGATATACTTAGAAAAATAAATACAGGATTATCTTGTGTGTTAAAGTGTGATAATGTGATTTTACTAGGTGGTTATAAAGGATTACTTCATTCGATATTATTGGATGCGAAGCAAGAAGAGTATTCTAACGGAATATACATAGACAATGAGAAAAATTTGCCACATGGGATTGTTTGCCTGACATATAAGAGATAATACGGAGGGTTCTGTAAGAATAGAAAAATGTAGTGAAAATATACACAGAAAATGTTGAGTGCGAATACCTGGTAAACAGAAATTTCCTGGGGGATTCGCACCGAAAAACATGTCGTATTTGGGTTAAATATGAAATTGATTGTGTGATAGTCTTGTAATGTTGGGAAAAAATTAGTATAATTAACAAAAGATTGACTGATTATAAAAGAAAAAATTAGTCAATGTTGCA # Right flank : TCACGAGAAACTTTGTGGGAATGAGTGGGGAGTGTGGTAACACAAACAATTAAATATTGAATTTGAGGGGGACTTGGAAAAAAGTATCCCTTTTCAACGTAAGGCGTTCAGAAATGAGCGTCTATTTTTTACCCAAAATGAAATGAGCATTAAATTTATGAAAAAGATATTGAAACGATTGTGTACGGGGGCTTTGCCTTTTGCGACTGTATTTACTGATTTGTCGGCTATACCCGTTTTTGTGGAACACAAGTAATACTGTACTGGACGAAGTCAGAAGAGCGTGTCGGTATCGTTGAAAAAGTGATGAATGACGGTTCAATTGGTTCTACCTTTAATGAGGGATACATAAGCCGAGGGTGAAACTGCCTGTTGTATTGACATGAATACCGCCTTTCAGAACGGCTGCAAGACCAAAGCCGACGCAAGCGCACGTAAGAGTGGCGCAAAGCAGCCGGCTAAAAATGTCAAGGTACTCTCTATTTTGCGTTCAAGAATAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTCGTGGAAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //