Array 1 1345039-1344851 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734718.1 Planktothrix rubescens NIVA-CYA 407 scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================================== ============================== ================== 1345038 43 88.4 30 AT.GAA..................................... AATAGTTGCCAGTGGGTTTGCATCTATTGG 1344965 43 100.0 29 ........................................... GACTAACTCAATCAGAGCGAAGTTTGTAT 1344893 43 100.0 0 ........................................... | ========== ====== ====== ====== =========================================== ============================== ================== 3 43 96.1 30 GGGTTTGTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATTGAAAGGATGATGCGGGTTTGAAGCTGTATTTTAGAGAA # Right flank : TCTGCCGTTTGAAACCCTTATGGGGCGGTCATTCTGGAGCCCATTTTCGTGAACCTCAAAAAATGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCAAAAATATAAACTATTGATTTGTCAAGGTTCTAGCGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATAATAATAAACCGAAACCCGCCGCTTGTCAAGGGGAATATTCTATGATATTGCGATCGCCCCTAACCCTTAACTTTTAACAATTGCCCCAAAATCCGCCAAGACCCGGGCATGATTTCTTAATAATCCCAATAAATTCAAACGATTACGTTGAATATTCAGATCATCATCCATCACCAAAACACTTTCTGGGCCATCAAAAAAACTGCTCACCGTTGGGGTAATTTCTGCTAAAGCTTCCACCAATTGACGATAATTTCTGGTGGCTTGAGAAGCTTTTGTTTTAGGAACTAACTGTA # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTTTGTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.47%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 2 1533628-1534317 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734718.1 Planktothrix rubescens NIVA-CYA 407 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1533628 37 100.0 33 ..................................... AAACAACCGTGTTGCAGCTTAATACCAAGGAAT 1533698 37 100.0 37 ..................................... TTATAGGCAATTTCTCCCTACGAATTAACGTTTTTAT 1533772 37 100.0 36 ..................................... ATTGATGAAAATGATGTTATCCGGGCGGGTAATGGA 1533845 37 100.0 36 ..................................... TTTGTTTCTGCCATTAAAGCAAGGCACTTTTCTTGA 1533918 37 100.0 36 ..................................... TCTGCTAATCCTTTTGCCCACTGAATCTTGATTTTG 1533991 37 100.0 36 ..................................... TAGCGTTAATCGCCGTTGATGTTGCATCTTTTGCGA 1534064 37 100.0 35 ..................................... TTAATGGCAAAAGCAAAGTCAAAACCAAAATCAGA 1534136 37 100.0 38 ..................................... TCAGCAAGAGCTTGTAAAGCGGTTAGTTCATTCCCTAA 1534211 37 100.0 33 ..................................... TGGTTAGATCCTTTGTTCGGAGCGCAAGGGGTT 1534281 37 97.3 0 ..................................G.. | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 99.7 36 ATAACAATCCTCAGTAATGGGGATTGCGAATTGAAAC # Left flank : TTGGGTGGTAAGGTTTCCAGTGATGATCTCAAATTGTTCTGGGAATCATTATTAAATTGTTGGGAATTTGATCGGAGTTCAGCACGTTCTTCAATGAATTGTCAAGGGTTGTATATTTTTACCCATGATAGCAAATGGGGTAATTATCCATCCCATAAGTTGTTTGATTTGCTGTCAGTCGAAAAAAATACGGATATCCCTCGAAGTATTAACGATTACGAGATTAATATTGATGGGGATGTGCCTGACGGTGTAACTTTGTGGCGCGATAACCTATAGCTGTTTTGCGGAGTTATGCCAGAACCCTTATTATGTAAGAGTTCTGGCTGTTTTTGTAAAAATAGGTTGACGAAATTTGTCTAAGCATTGACTTGAAGGCGGTTCAAGGATTTTTTTTTAATACAAAGTTGACAAAAAATAGAAATATTTGCTATGATCAACCTAGGTTCACGAAATTGCACCTTGAAAATTAAACATCACAGGGGTTTCGGCAGCCTGCT # Right flank : CAAAGATAAAATACTAATTACCCTAATTATTAGTATTTTATCTCTCTAATTAATTTAGCATAAGTTTCCGAAGGGCGATCGCCTAAATGATCCTCAATTTCCCTTTCTGTACCCCGATTAAAATTAATACTAAATAACCCAAATCTGGGCGTATAAGACCCCCATTCATAATTATCAGTTAATGACCAGTGCATATAACCTAAAATCGGAATATTTTCCTTTAATAATTGTTGAATTTGACGAACATGAGCTTCTAAAAATTGGCTGCGATGCAGTTGGTCAGAGCGATGAGTGGCGATACTATTATCCGGTTTTCGACGTAACGCCATGCCATTTTCAGCAATTAAAATTGGAAGGTTATATTCCTGAGCATAATATTTACAGAAAAAAGATAATCCTTCTGGGAGCGCTCGCCAGTCCCACCATTTACTCGTAATTCCCGTCATTAACCAATTTCTTAACCCTTTAGTTTTAAATTCAAAATCAGAAAAAGACGGTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAACAATCCTCAGTAATGGGGATTGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 600663-602344 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734717.1 Planktothrix rubescens NIVA-CYA 407 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 600663 36 100.0 40 .................................... ATTAAAACTGAATCGATTTGTTGTTCTATTCCAATGAGTT 600739 36 100.0 42 .................................... TTACTGAATCAATCATCTGGAGAATGTCAGACTTGATAATAA 600817 36 100.0 43 .................................... ACACCCAGATGTCCAACCTCAGTCGATGGACTCTATCTGTCAC 600896 36 100.0 45 .................................... TCATGCACCCCACTTGTGAGGTACAGACTACCTTCTTTTTTTACA 600977 36 100.0 45 .................................... CAATAATCAAGTCGGTAGCCCTACATGGTCTGATGCTGACCGTAA 601058 36 100.0 42 .................................... AGAGGAACTGCGGGGTCAATTAGCTGAACGGATACCGGGAGC 601136 36 100.0 48 .................................... TATAATTGAAACTGATGATTTCCTGACATCGGAACACCAAGACTTTAA 601220 36 100.0 42 .................................... AGTTTTTTGCAGGTAATTGTTTCTTGTTTGGGTTCGTGGGTT 601298 36 97.2 48 ............................A....... TAAAAACAGTCCTTTATTCAAGGTATCTTGGATGAAACTATCATCAAA 601382 36 97.2 39 ............................A....... TATAATGTCTGACATGGTGAACCTCTTGCTTAAAGATGT 601457 36 97.2 42 ...................................T CGGGAGATAATATTAATTCTGCAACTGTTCTCCCGAATCTAT 601535 36 97.2 37 ...................................T CCAAAATTTGCCAGAATTTCGTTGATAGTTTCCATGT 601608 36 97.2 41 ...................................T AAAGATTGACTTGCAATTTTTTTGCTGAAATATTTTTTAAA 601685 36 100.0 35 .................................... TAATTAGGTGTTATTGTTATCTCGCTATCGCTCTA 601756 36 100.0 46 .................................... TTGATATCAATAATCATATCATTAGTTAAGTTTAAGCTAGGAGACT 601838 36 100.0 41 .................................... ACCAAATCGTATGGTCAGTGCCCCCTTTGTGGCTGTATAGC 601915 36 91.7 43 ...........C........C.......A....... ATGTTTTGAAAGAGGTTAGGGAGTGCGATCGCAATGCCAACAA 601994 36 91.7 46 ...........C........C.......A....... TTCGATCATCTTCCCCTGTAACATACCAAGGATGAGTAGGTTTCCC 602076 36 91.7 47 ...........C........C.......A....... TTAGAATAGTTGCGCAATAACCAACCTAAGTTTTTTACTTCTTTAGT 602159 36 91.7 37 ...........C........C.......A....... AATTTTCCGGTCGGTGTATTCGGCTTTGACTAGGACT 602232 36 91.7 41 ...........C........C.......A....... TCTTAGAACTTTTATCATTCTTGGTGATTTCCGTTACAGAA 602309 36 91.7 0 ...........C........C.......A....... | ========== ====== ====== ====== ==================================== ================================================ ================== 22 36 97.1 42 CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Left flank : TTGAAGGATACAAACCTTATGAAATTCGCTGATGTTATTCTATATTGTTGCCTATGATATTCCCTGTGATAAACGTCGTCGCAAAGTGGCGAATTTATTGGAAGGATATGGAAAGCGGGTTCAATATTCGGTTTTTGAGTGTGTGTTGGCTCAATCAAAATATATTGAGTTACAGAAACGCTTGAAAAAACAAGTGAATCTGGCTGAAGATAACCTGCGGTTTTATCCCCTTTCCCGCCATACCTGGGGAAGTGTGGAAACTTGGGGCCAGGGGCCAAAGATTACCGAGTATCCGAGTTCAATAATTATTTAGGGTTGCTGGCGAGGCTTAGGCAAAATCGCTATAATACCGATTCTGCTGTTTATAGCCTCGCTATCCCTCTGGATATGGGTTCTGACGTTTTAATTAAGGAGTAAAATCTTGTTTCAGCCAACGGTTTTTATCAGCCCCGCAAACCCCCCCTAGACAACCGATGGCGTCTGGGTTTAAAATGGGAGGA # Right flank : CGCTAAGACAAAATTAGTGGAAGTTTTCTATTAATATGAGAGGTAACTGTTGACAAAAAGAGTAGATTTCGAGTAATATAACTTTGGGAGGCCGCTCTACCGCATAGAAACAAGGTCTCCATAGCAGTAAAGGCAATTCCCCAGCCGAAGGGTTACGGCAAATTCCTTTGTCATTACCTAGAAATAGGTAGTTAAGACAAAATTGGTCGAAGTCTTTTATTAATGCGGAAATCGAAAAGGCTTCGACTCCACTCGACTCCGCAAATAGGAAAAAAATCAGAGACTTCCGTAGCGACAAAATCTCTAACTTTTCAACTTTTGAAAAACTCCAAACACCCTTTTAAAACTCAGATAAACTTACTTTCCCTACTCGCTAGGGAAATTAATTGATTCCGATCTCACTAAAAAAAAGCCCCAGTTTTTACTAGAGCTTTAGTGGTTAAATATGGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAGTAACAGAAAAGGAACAGAAT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : CTCCCTACTCGCTAGGGAAACTAATTGAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 2831524-2832734 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734717.1 Planktothrix rubescens NIVA-CYA 407 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2831524 37 100.0 36 ..................................... CATAACTATTAACTATAGCAGTTTTTTCCTGTTCTT 2831597 37 100.0 36 ..................................... GGGGAATATTCTCCTTGCTATTTTAGACGCTGCGAT 2831670 37 100.0 36 ..................................... AATGATTAACAAGACTGATTTAAAGGTTTCATTTTT 2831743 37 100.0 38 ..................................... GGCCCTGTTTTGGCTCTGTTGATTGCAGCAGGCAACGA 2831818 37 100.0 32 ..................................... TTTTGATTTATACTAAAGTATTGTAGCTACAA 2831887 37 100.0 40 ..................................... CCAGGTTTCTAGCGTGGGCTTTTCGTAACTCACAACTTTA 2831964 37 100.0 34 ..................................... ACCCCGTAGCCTGGGAAGACTTCTCGAATGGGTT 2832035 37 100.0 36 ..................................... ACTGGCAGATTAAGCGACTGAATGAACTGGGTTATT 2832108 37 100.0 36 ..................................... CATCGAGGATTGATCGCTGCGATGAATTTTCTACAA 2832181 37 100.0 37 ..................................... AAAAGACAATGCAATTCCATTTATTAGATAGCGGTCA 2832255 37 100.0 37 ..................................... TTCTTTAATATTCATTTGACTTGTCTCCTTTGGTGAT 2832329 37 100.0 36 ..................................... CAAAACTAACATCGTCTCTAGTAATCTGCCACTTAT 2832402 37 100.0 35 ..................................... AAATGACAAAGGAGCAAATCAATGATCTATCGAAT 2832474 37 100.0 37 ..................................... TTTGAATTAAAAAACGGCAACCTTTCACCAAAGCAGC 2832548 37 100.0 38 ..................................... GCAGATTTGTGAAAGTAAAATCCTTTGTGTCAGTATCA 2832623 37 100.0 38 ..................................... AAGCCAGATGGGCGACCGAGAATCCATGAGAAAATAAC 2832698 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 17 37 100.0 36 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : AGGGAACATGGGTAATATTTCTGACTGTTTCATGTCAGTATTAAAATGTTACAACCTATTATAGTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAGAAAAGACTAAATAAAACCCCGACTAGATTATGTTTAGTCGGGGTTTTATGATTTAGGGATTGTCAATCAAAAGCCCCCGATTCCCAATAATCCTTAGCCGCTTCCCACTGTTCAGACGTAGCCGCGCAGTGGACTTGATGCCCTGCGTCTGACAACTTTCCTTTGTGATGTTTGGCGATCGCACCCTCCAAAGATACACAGCTTAATCGGTACAGAGGGATTGGGGATTGGTTTATTAGGATATCCAGGGATTGAATAACACCCAGACCAAAGCCCTGCGGATCATAAGTCACATGATTCTGTCTAGTTCCATCGGATTTGAAGTAACGGGCGTGAAGTAGTTGCTTTTCCATAATTTAATCAATGACTACAACTTGTGTTCGCCAGGCTTTTTAGTAAT # Right flank : GTCTGCCGTCTGAAACCCTGATGGGGCGGTGATTCTGGAGCCCATTTTCGTGAACCTCAAAAATTGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCAAAAGTATAAACTATTGATTTGTCAAGGTTCTAGCGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCATGAAAATAATCATAAACCAAAACAATTTTCTTGTCAAGGGGAATCTTATATGATATTGCGATCGCCCCCAGACCCCTGACCTCAAATAAAAAACCCCGCCTCCAACGGAAACAGGGTCAACGGTATCCTATTCAATTCAACTAGATGACAATAGCCTGATCTTGACGGGGGTGTTCAGACCCATAGGTAATTGTGCGTTTCAAAGATCCCGCATCCAAAACATAAATCCGTACCGAATCTTCAGCAGGTTTAACTAACTTTTCAATTTGGTGTTGTAAGTTCACAAACTGAACACTTGTTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA //