Array 1 1540318-1540881 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAHRJG010000001.1 Streptococcus equi subsp. zooepidemicus strain SEZ_19-037 tig00000001, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1540318	    36	 100.0	    30	....................................	ATCAGCATAATAGCCAAAAACGTGATGATA	
   1540384	    36	 100.0	    30	....................................	TAAATCATCTTGTATACTGCTACTTATCTC	
   1540450	    36	 100.0	    30	....................................	ACTTGATGACATCTCTGTAAACCTTGATGA	
   1540516	    36	 100.0	    30	....................................	GTCAGTACCAAGCCTATGACGTGTTTACGG	
   1540582	    36	 100.0	    30	....................................	TATCAAAAATAGTTTGTAAATTATCAATAT	
   1540648	    36	  97.2	    30	..................T.................	TCGTTTCACATTCAAGTAAGTGTGCCCGAT	
   1540714	    36	  97.2	    30	..................T.................	GCAACTATTGTTTATTATTTAGTAATCCAT	
   1540780	    36	  97.2	    30	..................T.................	AGATGAGACGTGTAATGAATGGTTTGAACA	
   1540846	    36	  86.1	     0	..................T..........TT..T.T	|                             	
==========	======	======	======	====================================	==============================	==================
         9	    36	  97.5	    30	GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC	                              	       

# Left flank :   TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAAGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATATATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGGTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGCTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGAAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTACTTGCAATTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG
# Right flank :  TCAGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCTAATGATGGGTAATACTACGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGGGACAAATTAAGGGAACTGTAACTTCCCTTTCCCCACCAAAGGGGATTTATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGGTAAGATATGTTTGATGTAGTGGTTGTTGAGGAAATTACCCTTACTTTTATTTTTCTACCCTACTATTGGCAGAAAATGACCATAGAATGAACTGGTCTGTTTAATCTGTGATTTATCAAACGATTGTCAATATTTTAGTAATAGCTCGTTTGCTGTTACACCAAAAATGTTATGCAGCTTGATTAACTTTTTGATTGGAGCTTTGCGCTGGCCATTTTCTGTCATACTGAGAGTTTGTTTGTTGGTTTCTAGTAGCTCAGCAA

# Questionable array : NO	 Score: 6.14
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC
# Alternate repeat :   GTTTTAGAGTTATGCTGTTTTGAATGGTTCCAAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.50,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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