Array 1 5967-354 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXGC01000029.1 Xanthomonas oryzae pv. oryzae strain IXO221 contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 5966 31 100.0 34 ............................... ACTGCATCCAGGGCAGGACGTCCGCCGAGGCAGG 5901 31 100.0 35 ............................... CAGCACCATCACGAACAAGTCGCCCACGAAATCGA 5835 31 100.0 33 ............................... CCAAGCTGCAAGGTTGCCCTTCTGACATTCCCG 5771 31 100.0 35 ............................... TACATTTATTTTCCTAGCTGAAAAAGAATGTGGCG 5705 31 100.0 34 ............................... TTGGGCGATGTTGAGCACAAGACCAGCAAGGCAG 5640 31 100.0 35 ............................... ATTGTCTCTTGGTTGGGTTAGAAGTTGTATGGCCG 5574 31 100.0 36 ............................... GTGACATTGGTCGACCCATCAGCACCAGATCCGCAG 5507 31 100.0 35 ............................... TTGGCCACAATGGCATAGATATCACTAGGCAGATC 5441 31 100.0 34 ............................... ATCGTATCCTTCGCGTACTGGATCACGTCGGCCG 5376 31 100.0 35 ............................... TGGCCAACGTAGAAGCTGCAACCCTTGGCGTTGCC 5310 31 100.0 34 ............................... ACGTGCGATTAAGCAAGGGCGAGTTATCTTCCGT 5245 31 100.0 34 ............................... CAGTCTTGAACAATGTCATCATACGCGATGAACT 5180 31 100.0 34 ............................... CAACAACGCGTAGATCAAGTGACAGAGTTGGCTT 5115 31 100.0 35 ............................... AATATCAAGCTCGTAATCACCAGGCTGATACGGAA 5049 31 100.0 34 ............................... ACGCCCTTACGCGCAATGGTCGTCATACGCCGTT 4984 31 100.0 33 ............................... TTGAGCGCGGGAAGAATGTGATTCTTTACCGCG 4920 31 100.0 34 ............................... TTGCCACCGACATAGAAGGTCTTGCCATCGCCGC 4855 31 100.0 35 ............................... CAGTGCGACCGCGCGGGCGTTCTCGGCGGTAACGT 4789 31 100.0 36 ............................... CATAATCATACCCTCCCAATCTGTTGTGCCAGCCTA 4722 31 100.0 35 ............................... ATCCGCTGCTTGTACAGCGCTACAACAGCAGTCAT 4656 31 100.0 34 ............................... TGAAGACGCCAACGTGATCTACCTGCGGGACGTC 4591 31 100.0 35 ............................... AAGCTCTTCGCTAAGCGTCTGCTCAATGAAGGAAG 4525 31 100.0 35 ............................... AATAACCTGGGCGCCCATCGTCAGACCTGCATGCA 4459 31 100.0 34 ............................... CCCGTGGCGGCGTCAGAGAAAACGTTTCAGGTCT 4394 31 100.0 33 ............................... TCCCAGCACGCCTTAACCGCATGGTCTTTGCAG 4330 31 100.0 34 ............................... ATCCGACGAACGGTAGTTGTTTCATTTTTGGTCG 4265 31 100.0 34 ............................... TTGTAGTCAGGGTCGCACAGCGCACCAGTAGGAC 4200 31 100.0 35 ............................... GCATGTAGCCGGGGTGTAGGGGCAGCGCCCCTACG 4134 31 100.0 35 ............................... CGCAGATTCGGGCACAACAGACACCTGGGCACCCT 4068 31 100.0 35 ............................... CTGGAAGCTGGCCACCGATAAAGGCGTTGCCTTGT 4002 31 100.0 35 ............................... ATCGCCTGCATGCAAAGCGTCAAGCATGCGTGCAT 3936 31 100.0 36 ............................... TCCATCTAAGTCAATACAACTTGTTGGCGCTTGGCC 3869 31 100.0 36 ............................... CTTGCATGGTGTTTTGAGTACATGGGCTTTATTGAA 3802 31 100.0 35 ............................... ATCATGATCCATAACTGCCATTTGGTTGTTGGTGG 3736 31 100.0 36 ............................... ATCCGAATACAGCAGAGCAGGGCAGCTGCTGAGTAA 3669 31 100.0 33 ............................... TTCAGTCAGGTATTGGGCTAGCGGCTGTGTCAA 3605 31 100.0 34 ............................... TAAGGAGGCTTTATGCCAGATGAAAAAAAGCTGG 3540 31 100.0 36 ............................... AGCTGGAAGAAGCCTAGGAAGGGTGTAAAGCCAGGT 3473 31 100.0 36 ............................... ACTCTAGTCTTTGATGTGCCTTCCGTCGCTGGGAAG 3406 31 100.0 35 ............................... ACGGATGTTGATAGTCAGCCTGGTGGGGCCTTGCA 3340 31 100.0 36 ............................... GCGGCGGACTACGTCGCGGAGGCGAGCGTTAGTCTA 3273 31 100.0 35 ............................... ACCGTATCGCTAACCGATTGACGCGTGCGCAACCA 3207 31 100.0 35 ............................... CAAAGGCAGGCGGGACAATAGCGGGTGACCTGACT 3141 31 100.0 38 ............................... TGTCGATGACTCTTTCACCGTGGTTGCGGCGCATTGAG 3072 31 100.0 36 ............................... CGGGTACGTTACGCGCCCAGGGTCAACGGGCCTCCC 3005 31 100.0 34 ............................... CTGCACTACGAGGTGCTGACGATCGATCGCCGCT 2940 31 100.0 36 ............................... TCTTCACCAGATCGATACTTAACACGGATAGGTGTG 2873 31 100.0 35 ............................... TTTACCGCGTCGTAGCTCTTGCCAGCACGCGGCAC 2807 31 100.0 34 ............................... TGCATCGCCCGGTGCTGCCATTGCCGGCGAGTTG 2742 31 100.0 35 ............................... ACCGGTCGCAGCCTGCAATCAGACTGGTGCAGGCC 2676 31 100.0 34 ............................... CATGTCATAGCTCCATCGCTCGGGACGGGTGGCG 2611 31 100.0 32 ............................... GTGATTCGCAAGAAATCAAACCTGCGGCTCAC 2548 31 100.0 33 ............................... CTGCCCTCGCCCAGGAAGCAGGCTTCCGGGTGC 2484 31 100.0 33 ............................... GCGAAAGCATAGCGCAGCGAGTCGATAGCAGCC 2420 31 100.0 35 ............................... TACCCGACCCGGTTTGACGATGCCCAGCGGATCGC 2354 31 100.0 34 ............................... AATGCATCCGTACTGATTCCCACCGCTGAAAGCG 2289 31 100.0 34 ............................... AATGCATCCGTACTGATTCCCACCGCTGAAAGCG 2224 31 100.0 34 ............................... TATTAGATTTTTTGTACCACATTAACATTTAATG 2159 31 100.0 35 ............................... CGATTCATCGTCTCGCCGGAAGATGGCGCGAGCTT 2093 31 100.0 34 ............................... GACGTACGCAACCAGATCGATACCACCTACCGAC 2028 31 100.0 34 ............................... GTCGATGACCATTTTGCAAGGCCAGCCGGTCGAA 1963 31 100.0 35 ............................... CTTTCGCAAGTGGCTCACGAATCAGGCTCAGGCAA 1897 31 100.0 34 ............................... CAGTCTGCTGACATCGCCGACCAGTCGTCGTCGA 1832 31 100.0 36 ............................... CTTGCGCAAGTGGCTCATGAATCAGGCTCAGGCAAG 1765 31 100.0 35 ............................... GCTGCGTTTGACCGCGCAATTGCGTGCGTAGTGCT 1699 31 100.0 38 ............................... AACGGCCAGAGCAGTGGAAATGTGTCGTTTGCGATGAC 1630 31 100.0 35 ............................... AGCATCAGCACGCCGCCATCGACGCCCGGAATGTT 1564 31 100.0 33 ............................... GAATTCCGCGAGCAACTCCGCGATGTCGCTCAT 1500 31 100.0 34 ............................... GTGTCGGGAACCGGTGGTTCGTCGCAGTTCGGCG 1435 31 100.0 34 ............................... CACATCAGCGCATCAAAGCCGGCATTGTGCGCAA 1370 31 100.0 35 ............................... ACTGAGACCGCAGCCATGGCAAGCAAAGCCGACGT 1304 31 100.0 37 ............................... CGCGCCAAATCGACTGCATTCGCCCAACTAGCGAAGA 1236 31 100.0 35 ............................... GTGGCCGTCGTGAACCCGTATCTCACCCCTCGCAC 1170 31 100.0 35 ............................... CACAGGAAGAAGTCGTCCCGCCGGTCGAAGCCACC 1104 31 100.0 35 ............................... TGGTACTGGACCGTGGCACGCCCGCGCCTGAAGAC 1038 31 100.0 34 ............................... ACCATGAACGGCCGACCGCCTCACGCCAAGCACA 973 31 100.0 35 ............................... GCCTATGACCCGGATGCAAGCTACTTTGATGCAGC 907 31 100.0 35 ............................... TGGATTGGCCATCAGAAGAAGAGGAGTACCTCAAT 841 31 100.0 34 ............................... AGCCATCAACTGTTTGGCGATCTCCGCAACGTCG 776 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 711 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 646 31 100.0 34 ............................... TTTCAATGCCTCCTTTTGCAGTTCCTTGGTATCC 581 31 96.8 35 A.............................. TGCGCATCACCCAGTAGATCGACCGTGCTTCGATT 515 31 100.0 35 ............................... TCCACGTCCAGCGACCGCATGCCGCTAACTGCCTT 449 31 100.0 34 ............................... ATAATCGTAGGTCCTAGGTTCAGAGGTTGGGTAC 384 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 86 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCCTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAACCTGCCCTTCAGGCTGTCCACGTCATCGCGCACGCCACGGGTCTTGTGAGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //