Array 1 92857-96713 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKY01000003.1 Meiothermus hypogaeus strain DSM 23238 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 92857 37 100.0 35 ..................................... ACTTCATTCCAGGTTACGGTTTCAGTTTTCATATC 92929 37 100.0 35 ..................................... TCGATAACGCGGAGACGCCCCGCGTTGTTCATCTC 93001 37 100.0 35 ..................................... CCGGCGGGATGAGGGGGAGCAGCGATGAATCCCCT 93073 37 100.0 36 ..................................... GTGCGGCTCAAATTGACCACCGCCACCAACCCCAAC 93146 37 100.0 34 ..................................... TCATCAGGGGGTCGGGGCGATTCATGGTTGTTCC 93217 37 100.0 35 ..................................... GAGGACGAGCGCAGCTCGAACAGCGTGACCAGCCG 93289 37 100.0 35 ..................................... CTACGCCGAAGAGGTCATCTGGGCTCAAGGCCCGC 93361 37 100.0 35 ..................................... TTCCATGCCCGGCTTGAGAAGGCCCTACAGATCGC 93433 37 100.0 34 ..................................... CCCAACGCCAGCGCGTATATGCCCGCTCTTCCTC 93504 37 100.0 36 ..................................... CTCGACAGGGTTGCCACGATCTCCTCGTTGCCGCTC 93577 37 100.0 35 ..................................... TCGGTGCGAGAGATGGCCGAAAGCGCCGGATCCAG 93649 37 100.0 34 ..................................... CCCCAGCGGTACCAGCCCCAAGTTTTCCAGTTGC 93720 37 100.0 35 ..................................... GGGTAGTATCTGGCCCCACCGACTTCCGTTCCCAA 93792 37 100.0 34 ..................................... CCAACGACTTTGTAGGCGCTGACTCCCAACCCTA 93863 37 100.0 35 ..................................... TGAACGTGGGTCTGAATCTGAACCGTTGGCCCCTG 93935 37 100.0 35 ..................................... CCTCAACCCAAGTTGGAGGCAGGACGCAGTCCTGG 94007 37 100.0 35 ..................................... AAGCCATTGCGCGGGCGGTGGGGGAGGGCATCATA 94079 37 100.0 34 ..................................... CACCGAGCAGGCGAGCCTCAAGCTCGAGCAGTCG 94150 37 100.0 36 ..................................... GAAATCCCTTGATTGTTGACGAGCTGCGCTGGGAAA 94223 37 100.0 34 ..................................... TTGGAGATTCGAACCGAGTTGCTAGTGCATGCCG 94294 37 100.0 35 ..................................... ATGTATGTCCTCCTCGCGGCTGTGGCGGCCTGCTG 94366 37 100.0 35 ..................................... GCTAATCTGATATTTACGCACTTTAGCCTGTGTAG 94438 37 100.0 37 ..................................... CAGGATTTTAGGCCCACATGTGCGGCTAAACCAGATG 94512 37 100.0 35 ..................................... GTGGGAGTAGGCGCGGCCATCCAAAATGTTTACGC 94584 37 100.0 35 ..................................... CATACCGCCGAGCCGAAACGCCCCGAATTCAACGA 94656 37 100.0 36 ..................................... ACCCCCTCGGGCAACAGATAGACCGGCTTGGCCCCC 94729 37 100.0 36 ..................................... CGACCACCCCGACAACCCCCATGCACGTTGGGGCAA 94802 37 100.0 35 ..................................... CCCGTCGCGATGCCGTTGTAGCTTTGAAACGCGGG 94874 37 100.0 35 ..................................... CTAGCGGGTAATCTAGGACGACAGGAGGTAAGCAT 94946 37 100.0 35 ..................................... CTAGGGGCTAGGGGCTAGGCTAGGGCTAAGCGGAT 95018 37 100.0 34 ..................................... GTTGCGCCAGCGCCAGCACTAGGCATTGCCATAG 95089 37 100.0 38 ..................................... GCTGGGGAGACATCGACGAGGCCTGGAGGGAGCAGCGC 95164 37 100.0 36 ..................................... TCACCGAACGCCACATCCAGCGCCAGATTGTGGACT 95237 37 100.0 35 ..................................... TTCGTCTCCCCGGCATACCGCCATTACAACCTCAT 95309 37 100.0 35 ..................................... GGCGGCGAGGTGGTGCGCCGCCGGGAGGATGGCAT 95381 37 100.0 33 ..................................... CCTGAGTCCATGCTCGAGCACTACTCGGCTCTG 95451 37 100.0 36 ..................................... CCTGCTCCTCGTGGTCTACCCCGTATGCTCGGGGCG 95524 37 100.0 34 ..................................... ATCCCCGTAAAACTCCACCGACCCGTCGGGGTGG 95595 37 100.0 36 ..................................... CTTGAAACCATAGCCGCGCAGGATGCCTTCCTCGAT 95668 37 100.0 35 ..................................... TGCTCCTGTCTTTGGCCTCATGAGAACTTCCATGC 95740 37 100.0 34 ..................................... GTGAAGAGGTTAGCAGCTCTCTGGTACTCCGGGC 95811 37 100.0 35 ..................................... GAGCATGACCTTTTCCAGGTCAGCTTCCACGTAGT 95883 37 100.0 35 ..................................... TGCTCCTGTCTTTGGCCTCATGAGAACTTCCATGC 95955 37 100.0 35 ..................................... GGAAGCCCCCGAAAAATCCCATCCCCAACCATTGT 96027 37 100.0 35 ..................................... AACGGTCATCTCAGTCAATCTATCTGAGAAAACAG 96099 37 100.0 36 ..................................... TTGGCGAATGGTCTTTACCTTGTAGGGGTTGCCCGC 96172 37 100.0 36 ..................................... GCAGGTTTTTCATTATTTGATGTTGACTTTAGCCAG 96245 37 100.0 36 ..................................... CCTGCCCTTCACCTCCACGGCTAACTCGGCCTGGCC 96318 37 100.0 35 ..................................... TGCCATAGCTGGTTTTGCTGGTGCTGGTGCGCCAG 96390 37 100.0 36 ..................................... GGTGAATATGCTGAAACCGTTTTTGTATATGCAAAG 96463 37 100.0 35 ..................................... CGCCATGCGCTCGAACAGGCTTTCGGCCCCGCCTA 96535 37 100.0 34 ..................................... CGCGTGCGCCCGTGCGCGTGCGTGTGTGTGCGTG 96606 37 100.0 34 ..................................... TTGAGCATTTCGATAATCTTTTCCATTGCTTTGT 96677 37 89.2 0 .............................CGA....G | ========== ====== ====== ====== ===================================== ====================================== ================== 54 37 99.8 35 GTTGCACTCGCGCGAAAGCTCGAGTGAGGATTGAAAC # Left flank : TGGTCACCTACGATGTAAACGTTACGTCTGAGGACGGCCAGGCCCGGCTGGCCCGGGTAGCTAAAGTCTGCAAGAACTTTGGTCAGCGGGTGCAGATGTCGGTCTTTGAGTGCAGGGTTTCGCGGGCCCAGCTCGAGGACATGGAAGCCAAGCTGCTCAAAATTATCGAGCCCGACAAGGACAGCCTGCGCATCTACACCCTTCAGGGCGGCAGAGAGAAATGCCTGCGCGTCCATGGCCAGGACAAGTACACCGACTTCGACGACCCGCTGGTGCTCTAACCCCTCCAGGGTTGGGCAACCTACCTGGCGCTTGCTTAGCGCGAACCCCAAGCAAGCGCCAAAACCCAGGGGGGTTCGCGCAAGCCGAGAAATCGGCTAGGGGACATTGAAAACCCGTATTTCCTTCACCTTCCCCCACCCTGCGTCGGAGGCCTTTTTGCGGGGGTTCGCGCAAACAGCCCCTTGAACCCCGTGCAGCACGCACGCTAGAATGAGGCC # Right flank : GCCTCTCCCCCCGCGTCACGTGCGTGGCCTCCAGGTCGAACCCCCGCCCCTTCAAGGCCCCAAAGAGCCGCTCTATCCCCCACCTGAGCCCGTACACCTCTAGCACCCGGTGAGGGTCCAGGTCCGTGGCCACAATCAGCCACTCCCGGACCCCAAGGCGCAGCCCCACCACCCACATGCGCCGGCCGTAGACCCAGTACCGCCGCTTAGACACCCGGCTCTCTCCCACCCTAAGGGAGGCAAAAAGCTCCCAGGCCCGAGGGCCTGAGCCAGGCCGCCACATTCGGGTGTTGGCCTTGACCCGGATGCACCGGGGGTTCCGTCAGACGGAAGTTTCCAGAACCGTAAAATATTTTCATGAAGCGAAAAGCTTGGGACGTGTACAGCGAGGTTCTTAAGGCGGCCCGAGATCTGGGCCTCGAGGTTGAGGAGCAAGAGGTGGCAAAGGCCCTCCTCGCCTGGCCCAAGGAGCGCTTCCACGTCTTCGCCGCCCGGATGGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGCGCGAAAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 1 28815-30796 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKY01000032.1 Meiothermus hypogaeus strain DSM 23238 contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 28815 37 100.0 36 ..................................... CTTATCTACCCACTCACTCAGCAACAGATGGTAATG 28888 37 100.0 34 ..................................... CAATGTCGAGTGTGATGGTTACCTCTCCAAGCTC 28959 37 100.0 35 ..................................... ATGCGGGCACGGACTGGCGGGCTCTGGTCACACTG 29031 37 100.0 37 ..................................... CTTAGACAGATAAGCTACAGCCCCATCTCGGGAGCGA 29105 37 100.0 36 ..................................... ACCGGCGTGACCCTCTGCTGAGTCACGCCTATGACA 29178 37 100.0 36 ..................................... CTTTCCAACCCCGAGACAGCAGCGTCAAGGCCGCCC 29251 37 100.0 35 ..................................... CGAAGTGCGGGGGTGGCGGTATGCCTAATCCCCAC 29323 37 100.0 36 ..................................... GTTCTAGCGCCAGTGCTAGTGCGCCAGTAGGGCTAG 29396 37 100.0 36 ..................................... GAGGTGCTCCGGGAGCTTCCCGGCCTGGACCTGAGC 29469 37 100.0 35 ..................................... CGGGGTAACGGTGTCTCTTTTCCCCGCCACAGCGT 29541 37 100.0 35 ..................................... TTGAAAAGCTTGGAAGAAGCCCTCAACGAACTTGC 29613 37 100.0 34 ..................................... ACGATCTCGTTGGGGCTCAGGAGGGTGGCCACGC 29684 37 100.0 34 ..................................... ATTTTCGTTTTCATCGTCTACGTGTAGCTCCTGC 29755 37 100.0 34 ..................................... GAGCCAGCACCGCTTGCCCGCTCCGGGTTCGCGC 29826 37 100.0 36 ..................................... TCGGCTCGGCAGTGGCCACAGCCACAGCGGTGCTGG 29899 37 100.0 36 ..................................... TTGATGTTGGCGCACCTCTATGCCCTAACCAGGCGT 29972 37 100.0 32 ..................................... ATCGGGGGGCAATGTTCGCACGGCGTCATTGT 30041 37 100.0 35 ..................................... TTCGTGGTCGCGCTCAGCCAACATCCTGAGCGTGG 30113 37 100.0 34 ..................................... GCCGCCCATGAGCACATAATCGAGCACAGGGTGC 30184 37 97.3 36 ..........C.......................... TCATTGACGAAGCTGAAATGCACATGCCCACCCAGG 30257 37 97.3 31 ..........C.......................... CTCCGCACCTGGAAAATCCCCAACATCCCAT 30325 37 97.3 35 ..........C.......................... GTCTACTTTGAAGCCTGCCCAAGCACGCTTGTTGA 30397 37 97.3 35 ..........C.......................... CCAGAGGCTGGCTGGGCCTCTATCAGGCGCAGGAG 30469 37 100.0 35 ..................................... CCTCGTTCGGAACCTGGCTTGCGCCGCCGAATCCG 30541 37 100.0 36 ..................................... GCCGCCATGTTCGAGGATTCGGTACACGTCGAAGGC 30614 37 100.0 36 ..................................... TCACTCAGGACTACAAGTCCTACCGCTGACGCCTGC 30687 37 100.0 36 ..................................... GATGTATTCGCCCACCCGCTTGTTGAAAAAGATTGC 30760 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 28 37 99.6 35 GTTGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Left flank : TTTGGATAGCGGCCTAGACACCTCGATATCTTACCGCTCCGATGCAGCCAAGGAAGCAAAAAATGCCCCTGGCCCCTACCCTCCGCTACCCAGCTTGGGCTGGTCACCGTCAGCAAAGGGGCTGGGTTGAACCGGCTTTGCTGCCAGTGGTGCTGTCACAAGCAACAAAAGCAGCAAAACCATAGCTCCAACCCAAGAGATTTGCTTAAAGCCGATAGCCTCGATGCCGGGGTTATGAAGTTTCTTTTTCATACCCCCAGCCTTGGGCCGAGGCCTGCACGGTTTGTGCAGGGTGGTGTAACCTATGCCCTAAGAATCTGCGCGAACCCCAAGCAAGCACCAAAACCCAGGGGGGTTCGCGCAAGCCGAGAAATCGGCTAGGGGACATTGAAAACTCGTTTTTTCTTCACCTTCCCCCACCCTGCGTCGGAGGCCTTTTTGCGGGGGTTCGCGCAAACGGCCCCTTGAACCCTGTCCAGCACGCACGCTAGAATGAGGCC # Right flank : CCAGCGGATCTTCTTCTCGCCATCCTTTTCGTACTGTTGCACTCGGGCGAAAGCTCGAGCACACAAAAAGTAACGCTTGTGGGCTAGGGAGGGGAACCCACAAGCGCTTCTTTACCCCCACTAGGTGGGTTGACTCATTTCTACAGCATGTAAATGCTGTTGAATAGGGAAAAAAGTCCTGCTTAGGGCTTTTGTAGCGTCTGGGCCAGGGCTAACTGCCCCAGGGCTATTCCACCATCGCCCGGTGGTACCGCTCGATTCCAGCAGACCTCTAGACCCTGCGCCTGTAGTCCTGCCAAGGCTAGGCCGTGAAGCAGGCGATTTTGCCACACCCCCCCTGAAAGAACAACGGTGGAGTAAACATAGCGCTTGCGCAAGGTACGCGCGGCGTCTACTACGGAGGTGGCCAAAGCAGCGTGAAACTGCCAGGCAACCTGTTCTTTTGGAGCACCTTTCTTCAGATCAAGGAGGAGGCCCTCGAGCAAGGGTCGATAGTCCCA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : NA // Array 1 60072-60904 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKY01000005.1 Meiothermus hypogaeus strain DSM 23238 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 60072 35 100.0 36 ................................... GCCAGCTTTACGTGCCAGATGAAGCGGACGCATTTT 60143 35 100.0 36 ................................... TGGGTTTCCCCAGGCAGCCCAAAGGCCCGCACAAAC 60214 35 100.0 35 ................................... AACTCTCTGAGTTCCTCGGGGGTGAACTTGCACTT 60284 35 100.0 38 ................................... AGCGGATAGCGGCCATAAAAGCCGGAGCTGAGGATGAA 60357 35 100.0 42 ................................... ATTGCTTATTCCCGATTGCCTATTGCTGATTCAGTATCTCAC 60434 35 100.0 39 ................................... CGAGAACTACCGGCGTCACCTGCCTTACCAAGTAGTACT 60508 35 100.0 38 ................................... GCGGTCGCCGCGCGAGAGCACGATGTGCACAGGGTGGA 60581 35 100.0 37 ................................... TTGAACTCGCGAACCCTTGCCTTGGCCTGAGCACTGT 60653 35 100.0 38 ................................... TCGGGTAGCCTCGGCCCGCGATATTGCGCAACTACCAG 60726 35 100.0 36 ................................... TGGAAAGCGAAGGCCCTTTTACCGCGAACAACCAGA 60797 35 100.0 38 ................................... TCGGGCCAGATTGCCTATGCCGATTGCCTGGAAAATAT 60870 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 12 35 100.0 38 GTCGCAAAACCTTAGCCCCGAAAGGGGATTGCAAC # Left flank : CCACCATCCCGGCAGGCAAACATTAGGTTAGTCGGGCTTGGGACGCTTGTCAAGGAGACCTTCCCAGTGCCGGTGCAGCCCCGACAAAACCCCTCGCCCCACCCCAAGCCGCACCCGGCCAGCCCCCGTTACAATAGGCGTTATCCACCCTTTAGCCCCCACAAATGCTGTCGCAACCGCACCCCCTTGTTGCCCAAAGCGCACAAAAACGCCCATTGCCACACAATGGAAGCAACTTCCAAAAATGACCCATTATGTTTTGCGCAAAATGCTATAATGCACATGTCGAGCTTTTCGACGGTGCTTCTTGAAAACCAGAACGTGCGATGAAAAAGGCAAACCTGCGCTATAAAAAATCCAAAAGTGCGGATTTGTAAGCATTCATCGCAAAAACTGCCATTTTCTACGCAGTTATCCACAGGCACCTGTGGATAACTCGCTTTTCTCATAAATACCCCCCTCCAGACCCCTGTACAGGACGAGGTTTAACGGGGTATGCT # Right flank : CTAGGCTTCCTTACGATGTCTGGGTTTGCTTATCAAGCTCGAAGGATAGGGTTGTTTTCTGACCTTTGAGGCGGGTTTTTTGGTATATCTGTGGTATGGAAACCCAGACCCACAAAGTGCTCATCCTGACCGTGGGCCAGACCCTCGAGCCCCTGGAGTTCTCCCTCAGCGAACACACCCCGGAGGGGGTAATTTTTGTGGCCAGCCAGGGGAGCCAGCCGGTAGCGGGGGAGCTGGTGCGGCGCTATGGCGATGCACTGCGCTTTCATACCCTGCTTCTGGACGACCCCGAGGACATGGGCGAAATTTTCCGCAAGGCACGGGAGGCCCTGCGTAAGGCCCTGGAATGGGAGGCCCGGGTGATTGTTGCCGACATTACCGGTGGCACCAAGACCATGGCGGCGGGTGCGGTGCTGGCGCTTAGTGGGCAGGGGGTCACCTTCAGCTACGTGGGCGGTGCCAAGCGCGACGACAAGGGGCGGGTGGTGAGCGGCTCCGAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAAACCTTAGCCCCGAAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 2 76923-79455 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKY01000005.1 Meiothermus hypogaeus strain DSM 23238 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 76923 35 100.0 38 ................................... CGGGTTATCGTTTTTGCCTGCAAGCGCCAGAATACTAT 76996 35 100.0 37 ................................... AACACTCGACGGATGGACCCCTTGGCCACAACCCCGT 77068 35 100.0 40 ................................... CTGGGTAGGGGTCAGGTTTCGGGCATAAATACGATCAAGG 77143 35 100.0 38 ................................... TCTCCCCATACCCACCCCTCGCGGGGCAGGATGCCTTG 77216 35 100.0 35 ................................... AGGAAAACGGCACGGTGCCTAAACGCACGCTCCGA 77286 35 100.0 40 ................................... CTTGAGTGCCGCGATATTTTTTGCACTACCCCTTGCACAT 77361 35 100.0 40 ................................... CTTGAGTGCCGCGATATTTTTTGCACTACCCCTTGCACAT 77436 35 100.0 37 ................................... CACCTCCACGGCCAGTTCGGGTTGGCCGTGGTCGGGA 77508 35 100.0 35 ................................... ACTCTGGAAAGAAGGGTTTCTGTGTAAGCCTTAAT 77578 35 100.0 40 ................................... GTCACGGGGGGGGTCCCTGCGCACGCGTGTCGGGGCTTGT 77653 35 100.0 36 ................................... TATTGCCTATTGCCTATTCATTCCATGCGCTCACCT 77724 35 100.0 40 ................................... CCGGAGCAACCGGAGCCGGAGCCTGAGCCTGAGCCTGAGC 77799 35 100.0 43 ................................... ATGGCCTGGATGTGGGGGTGCGCACGCTTAGCCCACAGCCGAG 77877 35 100.0 37 ................................... CAGTCCTTGTAAAGCAGTTGCCCATCTGGGCCAAAGA 77949 35 100.0 40 ................................... ACGAGATTTTCCGGCTTGTCTTGAGGCGGGTAGCCCAGCA 78024 35 100.0 36 ................................... GGTGTACTCGCACTCATCACAGGTCACGAATTCATC 78095 35 100.0 42 ................................... TGGGCGATATGGGACAGCGACCTTGAGGGCTTGACAGCACTT 78172 35 100.0 37 ................................... TCCAATAGGCGGTTCACCAAGCCTTCCTTATCGTCAA 78244 35 100.0 37 ................................... CCGCCACACGCAACCTTGAGGGCCTGATAAATCATCT 78316 35 100.0 38 ................................... GCCGAGAGCTGGGCAGGAGACCTTTTTGTTCGTAACAA 78389 35 100.0 39 ................................... GCCAGCCAGGACCCCACCGCGTCGTTTTCCACGTACACG 78463 35 100.0 40 ................................... TAGTCACCGATAGGACTGCTGTCACCTCCCTTACTTTGAG 78538 35 100.0 44 ................................... AGAACCACATGCCGTTTCGAGGCCAGACCGAGAAAGAGGGGTGG 78617 35 100.0 34 ................................... TCGTTCTGAACGAGAACCTGAACGAGAACCACAT 78686 35 100.0 42 ................................... TCAACTTTACCCCTAGCGGCCTCGAGGACACCAAGGACTTGA 78763 35 100.0 37 ................................... AAGGAGGAAGATGATGGATAGAATCGAAGTGCAGAAG 78835 35 100.0 40 ................................... GCCGAAAATCGTCATGGGGGATACTCATATCCCCCTGCAC 78910 35 100.0 36 ................................... ACCATTGACAGCGACCCCATCCTGCGCACCGCCCTC 78981 35 100.0 36 ................................... GAGTACCATTTGACGCTTTCTCGCTTGTATTTTCCG 79052 35 100.0 39 ................................... CTCGAGCAGCAAAAACTATTTCGACCACACCGGCGATGC 79126 35 100.0 39 ................................... GTGAAGAGGCTGAAATGGGTCGGGGTTTCCTTTTCCTTT 79200 35 100.0 39 ................................... ACAGGGTGGAGCTTGCCGTTTGCTTGAATCTTCCCTACC 79274 35 100.0 39 ................................... TCTACCTACGCGCTACGCGCGCGGTAGGCCCAAAGCCCT 79348 35 100.0 38 ................................... ACCAGCGATACCCTATCGCTCCTGTCGAATTTTCCGAA 79421 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 35 35 100.0 38 GTCGCAAAACCTTAGCCCCGAAAGGGGATTGCAAC # Left flank : GCATAGCGTTACGCAGTAGGGGTACTGGGCTTCTATTGTGTGAATGGCTGGTGCCGGCCCTCCTAGCAGCAACACCTCGCAAGACCACCCGAATCTCCTCGAGGCCCACGCCATGACCTACCCCCCCGTTACAACAGGCGTTATCCACCCTTTAGCCCCCACAAATGCTGTCGCAACCGCACCCCCTTGTTGCCCAAAGCGCACAAAAACGCCCATCGCCACACAATGGAAGCAACTTCCAAAAATGACCCATTATGTTTTGCACAAAATGCTATAATGCACATGTCGAGTTTTTCGACGGTGCTTCTTGAAAACCAGAATGTGCGATGAAAAAGGCAAACCCGCGCTATAAAAAATCCAAAAGTGCGGATTTGTAAGCATTCATCGCAAAAACGGCCATTTTCTACTCAGTTATCCACAGGCACCTGTGGATAACTCGCTTTTCTCATAAATACCCCCCTCCAGACCCCTGTACAGGACGAGGTTTAACGGGGTATGCT # Right flank : CTTGAGGTGCACAGGGTCTTGTGCGTGTTGAAAAATTCAACAATAGGAGCGCTTGGGCGGCATTGAGTGGCTCATGTGTTTGTGCTTTTGTTGGTGTGGCTTACCCCAAGGCCAAAAGCCGGGGTCTTCTGGGGTCTCGAGCATGAGCAACCTTACCGCTCTCGCCCAGCGGCAAGCCCTGCCCTGTTCTCAGAGTGTCAACTAGCAAATATAAAAGTAAACTGCTGTGACAAAATACCCAGCTAGTTGAAAGGTAAGTGCTATAAATGTTCCAGAATGGACTCAAACACTCCAAATAAACTTGCGCTGGCAGGGCTTCTGCACGACCTGGGCAAGGTTTACCAGCGGGCTTATTGGGGGCAGCCGCCTGAGGGCGTTTCGGACTGGAGCCACCCGGCCTATACCGAGTGGGCCATTCGCAAATGGAAACGGCTTTTTTCCGACAACGAATGGCTGGCCCTGACAGCAGCCCGCCACCACGAGGGCTGGCGGGAAAAGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAAACCTTAGCCCCGAAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 3 89817-90375 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKY01000005.1 Meiothermus hypogaeus strain DSM 23238 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 89817 35 100.0 36 ................................... AGGGGCGCTGGCTGGTGCCCCAGCAGGCGGATTACT 89888 35 100.0 40 ................................... TGGAGTAGGAAATGGCTTTGCGACGGGCCAGTTCTGCCGA 89963 35 100.0 40 ................................... GGGATTTCGCGCAATTCCTCGGCGGTAAAATGGCACTTTT 90038 35 100.0 42 ................................... CCTGGATTGCGGTGGTAAAGAGCCTTGCCTTGTGGTCGTCGA 90115 35 100.0 42 ................................... TTAGCCAAACGGCTAAGGACACGACCATCGGTAGCTGGGTTC 90192 35 100.0 41 ................................... TGCGCTGCCCGTACCACGCTCGCCAATCTGGGGAAAACCGC 90268 35 100.0 37 ................................... AACAACACATCCAACTGCGAGCGACGCGCACCCGCCA 90340 35 91.4 0 .............................A.T.G. | G [90371] ========== ====== ====== ====== =================================== ========================================== ================== 8 35 98.9 40 GTCGCAAAACCTTAGCCCCGAAAGGGGATTGCAAC # Left flank : AGCTACTGCAAAAGAAAGCGGAGCTCTCCCAGGACAGCATCCGCATCTACCCCATTGGGGGTACGGTAGAGGTACTGGGTACGGGCCGAATCATCGAAGACCCCGACTTCCTGATTCTCTAACCTGCGTTAAGCAAACCGTTACGCAGCCCCCAACCCCCAAAAAACCCGTCGCAACCGCACCCCCTTGTTGCCCAAAGCGCACAAAAGCGCCCATTGCCACACAATGGAAGCAACTTCCAAAAATGACCCATTATGTTTTGCGCAAAATGCTATAATGCACATGTCGAGCTTTTCGACGGTGCTTCTTGAAAACCAGAACGTGCGATGAAAAAGGCAAACCCGCGCTATAAAAAATCCAAAAGTGCGGATTTGTAAGCATTCATCGCAAAAACGGCCATTTTCTACTCAGTTATCCACAGGCACCTGTGGATAACTCGCTTTTCTCATAAATACCCCCCTCCAGACCCCTGTACAGGACAAGGTTTAACGGGGTATGCT # Right flank : CACAAACCCCCGGTGTGGGCCGGGGGTTTTGTTGTGCTGGGACTATCGGCTTACTCTAAAACTCTTCGTCCCACTCCACGATGGTCTCGCTGGTCAGGCCGGGGTTGGGTTTGGCGGCGGTGCTTGCTGCGGTAGCGGCGGCTGCGGTTTGAGGAACGGTGGGGTTGCGTGAGCGCCGCAGAGGTGTGCGCTGGTTTTGTAGCAGGCCAAACTGGGCGGCGATGCCCCGCAGGCCAATGGTGGCAAAAATAATCACCAAAAACACCGTAAGTCCCCAGAACAACTGCGCTACCAGGTTTTGCTGGATGGAAAGGTTGGTGAGGACACCCAGGAAAGGCAACCGCCCGTAGCGAGAGTCGGAAAGAATAGAACCGATGTAAGAAAGACCTTCCATCATGGCCGGGAGCAGCAGGAAGAAGAAGGCCAGCCCCAGGAAACGCCAGTACATATTGCGCCCCCCAAAGGTGAGGGTTAGCAGATACAGCGGAAAGAAGGCCAGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAAACCTTAGCCCCGAAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 5142-1508 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKY01000132.1 Meiothermus hypogaeus strain DSM 23238 contig_132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 5141 29 100.0 31 ............................. GCGTAATGCGCTTTTTAGTGGCTGTAGAGGC 5081 29 100.0 32 ............................. AGGTCTTTCTCCACCTTAGCTAGTGCATCCAC 5020 29 100.0 32 ............................. GCCTGAGCGTAACAGCAGTGGCTGCTGAGGTG 4959 29 100.0 33 ............................. AAGACCGAGCGTGGCGAAAATAGGCCCGGTTAC 4897 29 100.0 32 ............................. CGAGCTGAGGATCTGGTCGCTCGATCGCGGCT 4836 29 100.0 33 ............................. GAGAGACCATGCAAGAAGCCTTTGAACGAATCA 4774 29 100.0 32 ............................. CGACTGTAAGCGCTGTGATACCCCCAATAACC 4713 29 100.0 32 ............................. CTCGTTGGCAACGGTAGTCAGGGCTTTGTGCA 4652 29 100.0 32 ............................. CCTGACCACTTACCTTGAGGAGTGGAAGGAGC 4591 29 100.0 32 ............................. CCCGGCAGCGTGCAGCGCACCATTTTGGAAGC 4530 29 100.0 32 ............................. GCCGCCGGATAACGGCGGCCTGGAAAGCTGCT 4469 29 100.0 32 ............................. TAGTCCGCAGGCCCAGAGCACCCGCAGGCTAC 4408 29 100.0 33 ............................. CCCTCCTCAGGGGTTTCGCCCCACCCCCCGCAC 4346 29 100.0 32 ............................. GGCGACCTCAAAGCCGAGGGAAGCCTGACCAC 4285 29 100.0 32 ............................. GAGGGGCGGCGCTTTCCTTTCCGCAATCCCCA 4224 29 100.0 31 ............................. CGTCGCCAGGCGAAGGCGGCCCGCCCGCTGC 4164 29 100.0 32 ............................. GAGGAATGGCAGGCCCTCGAGGAGCGAGCAAG 4103 29 100.0 32 ............................. TCCACGCGCGTTTGCCTAGCACGCTTCAGCGC 4042 29 100.0 32 ............................. CACGTGGAGTGGGGGTGTATTGCTATGGTGGT 3981 29 100.0 32 ............................. TGAGCGCGTCACAACCCGTGGTGGTGGTGTGT 3920 29 100.0 34 ............................. GGTGGGTGCTACGCCGTGAAAAGCCGTCCGAGGG 3857 29 100.0 33 ............................. AGACGTGATAATAGGTGCAGCCGACTGAGCAGC 3795 29 100.0 32 ............................. GCACCTGGTTTATTTCATGCTGAAGCGTAACA 3734 29 100.0 32 ............................. AGTGGGGCTGGCCGGGCTTGCGGGCGGTCTGG 3673 29 100.0 32 ............................. CCTGCTTAATCAGGAGGTGCAGCCATGAAACC 3612 29 100.0 32 ............................. CGCTGGCCGCTGCCCCTGGTGCGGGGCGACCA 3551 29 100.0 33 ............................. TCCATGGACGCTCCGGCAGATTGTTGAGGTGGC 3489 29 100.0 32 ............................. CAGTACCGCGAGCCGGGCCGGCCGGGCCCCAG 3428 29 100.0 32 ............................. GTTCGACAATCATGCTGTCGTCGAACACGTCA 3367 29 100.0 32 ............................. TGCCGTTGGGACTTTCAGCCCAGACGGTAGCG 3306 29 100.0 32 ............................. GGGGAAACACATGGATATGGATTCCGAGCGAT 3245 29 100.0 32 ............................. CCCAGCGAGAAGCGATGCAAGATGTGGTGAAT 3184 29 100.0 32 ............................. GATACCGAGCGAGCGGCGAACAGGGCGTACTG 3123 29 100.0 32 ............................. GCAGCCCACACGCTACCTTTGAATATCGCCTT 3062 29 100.0 32 ............................. GGAGGCACAGCCAGAGCCGATAACTGGCCTGC 3001 29 100.0 31 ............................. GCAAACCACAGTTTGGGAAAGCGGAAGAGTA 2941 29 100.0 33 ............................. GGTATATACCCCACCGTTGTCGTTGAGCGCGAC 2879 29 100.0 32 ............................. CCTCGAGCCAGCGCTTCGATGTGGGATACCTG 2818 29 100.0 32 ............................. CGGCTCAAGCCCAGGGCTGCGGCGGTGAACCG 2757 29 100.0 32 ............................. TCGAGACCTGGGGCTGGTTGTCGAACCTGTGG 2696 29 100.0 33 ............................. CTCCTGTCTGCCGGGATGCGGGCAGGTTCGGGT 2634 29 100.0 32 ............................. CGTTCTGTGGCAAACATAGCTTCCCGCTGGCC 2573 29 100.0 32 ............................. TTCCGTTTTCATTCTCTCCTTCCTCCTGTGTG 2512 29 100.0 32 ............................. TTCCGTTTTCATTCTCTCCTTCCTCCTGTGTG 2451 29 100.0 32 ............................. CCCGAAGAGCCTCTGGTAGTTACAGGTGGGCC 2390 29 100.0 32 ............................. TCTTAGGCGTGCTGGCATCTGCCCCAGATGAT 2329 29 100.0 32 ............................. GTGGTTGACCGCGAGGAGGGGTTCAAACTCTT 2268 29 100.0 32 ............................. CCGCAGCCCCGGGAATTGGGTGCGCGTCGTTT 2207 29 100.0 32 ............................. GCAGAAGTGCCGTCTACCGTGATGCTGATGGT 2146 29 100.0 32 ............................. CGCTCGAGGAGGAGCACCAGGAGCACCTAAAC 2085 29 100.0 32 ............................. CGCTCGAGGAGGAGCACCAGGAGCACCTAAAC 2024 29 100.0 32 ............................. CGCTCGAGGAGGAGCACCAGGAGCACCTAAAC 1963 29 100.0 33 ............................. TTGTAGGGACGGGTCATTTTCGCCTGTGATTGC 1901 29 100.0 32 ............................. GGCAGGGTTCATGTCAAGTTCCCTACGCAGTG 1840 29 100.0 32 ............................. CTCAGCGCTTTATTCAACCATCGGCTGCGCTT 1779 29 100.0 32 ............................. GGATGGTTGCCGGAGTTTCCCATCGCTCGCTT 1718 29 96.6 32 ............................T GAGACTTTCCAGCAACAAATGCAGGCGGAGGC 1657 29 100.0 31 ............................. GCGGGCCCTAATGTGGCTTAGCCATCTCCTC 1597 29 100.0 32 ............................. TGCGGCTCGGGGGTAGGGCCGCTTACCGGCTG 1536 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 60 29 99.9 32 GTATTCCCCACACGCGCGGGGATGAACCG # Left flank : GAACCGGCCGGCAAGGTGCACCACCGGCCCCAAGCCA # Right flank : TCAGCGGGCCCACCACCGATACACGCCATAGCTTCAAAAGGATGCTGTGTGGGGTATTCGTGGGAGGCCTCTATGTCAATACCCGGCACAACGCCCGGTAGACGTCCACGTCCCGGGTCACCTGGCGCTTGGTGGCCCGGGTAGCCTGCCGCCGGGCCATGCCCTCGCACATCTTTCGGGCATGATAGGCCTGGGTACGGGGGTCAAGTCGTAAGCGGTTCCAGGTGATGAGCTCAATCACCCGGTTCAGGCGACGGTTACCGCCTGGGTTAACCTTGACCCGCTGGCGTTGACCGGAGGAGTGGTCTAAGGAGGCGGTAGCTGCATAGGCTGCAAAGGCGGCCTCGTCGCGGAAACGCTCTAGATACTGCACCTCGCCGATCAGGACGGCGGCGCTCACCAACCCGATGCCGGTCTCGGTCTGCAAGCCCCGGTAAGGCTCCAACAGGGTTTGCATGGACTGCTCCAGGGCCGCAATCTCCTGGCTGAGGCTCTGCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCTCGCGCGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2207-3273 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKY01000144.1 Meiothermus hypogaeus strain DSM 23238 contig_144, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2207 29 100.0 32 ............................. CCGGGCTATCCCCGCTTCAAAGGCCGGGGCTG 2268 29 100.0 32 ............................. CCCGTACATGCGAACCCAGGCGGCATTGTAGA 2329 29 100.0 32 ............................. TGCGGGCGCTGGCCACCAGGCTCAACCTCGAG 2390 29 100.0 33 ............................. GGTGGACAACCCGCATTATCTAATCTCCAGTTC 2452 29 100.0 32 ............................. GCGGCTACCTCGAGCTTGCGGCTGCCGATTGG 2513 29 100.0 32 ............................. CCCAGGACCTCACCCCGCTCCAACTACGTCTT 2574 29 100.0 31 ............................. TCGGTGCTCGACCAGGTGGGCTTTATCGAGC 2634 29 100.0 32 ............................. AAAGAGCAGGTAGCGGACGGGAACGAAGCCAA 2695 29 100.0 31 ............................. GTCAGTCGGCAACTGGTAGACCTGGCGGCCC 2755 29 100.0 32 ............................. TGTGGGCGCAAGAACTTTTGGCTTACTTGCGC 2816 29 96.6 31 ............................C GGCTTCTAACCACATGGTGGCGTTCATCGAA 2876 29 100.0 32 ............................. AGGCTGCATTTGAAGGTGGTGCTGAATACAAA 2937 29 100.0 32 ............................. GTTTAATCCTTTTTGAATCTCACTCCAAGCAC 2998 29 100.0 33 ............................. TGTTACAGTTACACCCCCTGAAAAACACTGTGC 3060 29 100.0 33 ............................. CTACCGTTTTCATAGATAGCTATACCGACATGC 3122 29 96.6 33 ............................A GATGGTTGGTGTTTTCAGGTGTATTGACAAGCC 3184 29 100.0 32 ............................. TTGCTCAATGTAGCGCACCATAGCACGCACAA 3245 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.6 32 GTATTCCCCACACGCGCGGGGATGAACCG # Left flank : GCCCCCGGTGAGCTATGGGATGTGGACGGTACGGTTCCTGGTGGGGTGGCCTACGGCGAACTCGAGCAAGACGACCCCAACTAAACTATGGTCGTGATTGTGCTGGAAAACGTACCCAAGCGTCTGCGCGGCGAGCTATCGCGCTGGATGTTGGAAGTGAGCACCGGTGTTTTTGTGGGGAGCATGTCGGCATTGGTGCGGGATCTGCTATGGGAAAAGTGTAAGGAGAAAAAGACGGTAGGGCGTTGTTGTCTGATGTACCGTACCAGCAACGAGCAAGGTTTTACAATCCGAACCCATGGCGACACCACCCGCACCCTGGTAGACTTTGATGGCATAACACTGGTAGCTGTGCAAAACGCCGAATGGCAGCGCATCCATGCCAAACGGAAAAAGTCTAAGGCGACCGAGAACCTTGAAAAAGAAAATCCCAACCCATCAGCTCGGGATTCCGACACTTCAGACGGGGTAAGTGGCTGAATTTGCTGTTAGGATCAAGT # Right flank : CGGATTTTATCGTGCATCCAGTTCAAGCCGGTGTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCTCGCGCGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //