Array 1 847898-850121 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP055227.2 Erwinia amylovora strain Ea1189 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 847898 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 847959 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 848020 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 848081 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 848142 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 848203 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 848264 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 848325 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 848386 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 848447 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 848508 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 848569 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 848630 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 848691 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 848752 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 848813 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 848874 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 848935 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 848996 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 849057 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 849118 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 849179 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 849240 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 849301 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 849362 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 849423 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 849484 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 849545 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 849606 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 849667 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 849728 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 849789 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 849850 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 849911 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 849972 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 850033 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 850094 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.3 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 861029-863134 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP055227.2 Erwinia amylovora strain Ea1189 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 861029 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 861090 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 861151 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 861212 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 861273 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 861334 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 861395 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 861457 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 861518 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 861579 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 861640 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 861701 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 861762 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 861823 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 861884 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 861945 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 862006 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 862067 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 862128 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 862190 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 862251 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 862312 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 862373 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 862434 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 862495 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 862557 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 862618 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 862679 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 862740 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 862801 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 862862 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 862923 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 862984 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 863045 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 863106 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 872598-872926 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP055227.2 Erwinia amylovora strain Ea1189 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 872598 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 872658 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 872718 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 872778 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 872838 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 872899 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTTCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //