Array 1 550188-550819 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085524.1 Zhaonella formicivorans strain k32 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 550188 33 100.0 33 ................................. ATTTTCAGATAGACCCATAGGGGTTGTTGTTTG 550254 33 100.0 34 ................................. TACGAAGATTGGTAAGATTCTAAGTCTTGGGCTA 550321 33 100.0 34 ................................. AGTGAGCGCACATAAACGTAATAGGGAATATTTC 550388 33 97.0 33 ................................T AAGAAATGCATTGAACTTGACCTTGACAAAGCA 550454 33 97.0 33 ................................T TTGGCCCCGGTATCTTAAACACCGCTGGCGGAG 550520 33 97.0 34 ................................T GTTGGAGCATATTTCATTTTAATAAACCAAAATT 550587 33 100.0 34 ................................. TACCAGGTATCATCAATTGTTTTGCCAGTTAATT 550654 33 97.0 34 ................................C GCACAACAAAGGTAAAAAAGGTGTTGGTGGTTGG 550721 33 100.0 33 ................................. AGTAGCTTTCTTTGAATTGCTTTAGCCATGCAT 550787 33 97.0 0 ................................T | ========== ====== ====== ====== ================================= ================================== ================== 10 33 98.5 34 GTCGCACCCCACGCGGGTGCGTGGATTGAAACA # Left flank : CCTTTGTCTGGAAATAAGGAGGATTGACTCAATGATGGTACTAATTACTTATGATGTGAATACAACAACAGAAGCTGGAAAAAAGAGACTCAGACATGTTGCCAAGCAATGTATCAATTATGGACAGAGGGTTCAAAATTCTGTATTTGAATGCTTGGTGGACCCTGTTCAATTTGCGCAATTAAGGCACAGGTTGGAGGAGATAATAGATAAAGAAAAAGATAGTTTAAGGTATTATTATCTAGGTAATAACTGGAAAAACAGGGTTGAACATGTTGGAACCAGAGCAACTTTTGATCCTGAAGGGACTATTATAGTTTAGGTAATAGTTTGTGCGAACCTGATGTTCACACGTTTTTCCACGGGCATCGCACTAATGTAAATTGAACGATGTTTCTATTAAAACATATACGAGCTTATATCTTGGGGTTACGTTGATTAAGTGTTTCGCTATTATAGAATAGCTAACCCTTGAGATAAGTTGCTTACTCGCAGGCGCA # Right flank : TTTTGGAAATGGCACATCAGCAAATAGCTCTTAAGCCCCCTAACTAGGTTGGACATCGTTTCTTAAGAAATGATAAACTTAGTGTAGGGGGAATTTTTATGACCAGGAAAAAATACAGCGATGAATTTAAACAACAAATTGTCAAAGAAGCAATTGAAACTGGCAATATGTCCTTAGTGGCCCGGCAGCATGAAATTGCCAAATCAATGGTTGCCAAATGGGTAAAACAATATAAAAACCCTCCTGTGCCTAAAAATAATAAGAAAAAAACTATTGATAATAGTTACTATAAAGAACTTGAAACCGAGAACGATAAACTTAAAAAGCTCCTCGGCGAAAAAGATTTGGAAATAGCCATACTTAAGGATTTGTTAAAAAAAACAAACCTTCGATAGAAGATAAAGTAAGTATCGCCAACAAATGGATTAGCCGTGGTTACAAAGCAGTTTTGGTTCTAAAAATAGTAGGCCTTAGCCGCTCTACGTACTATTATCGTATTT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACGCGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 552346-553314 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085524.1 Zhaonella formicivorans strain k32 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 552346 33 100.0 34 ................................. TCACAAAACCAAGCTGGGCTAATCTTTTCTCTAT 552413 33 100.0 34 ................................. AGAAAAAGAAATTGTGAATGATATACCAAGCAAT 552480 33 97.0 33 ................................T GGAAGTGTCCGGAATGTAAAGGGGAGTGGTGGC 552546 33 97.0 33 ................................A TTTTGTGTTTTACTGTGTCTACAACGGTGTTGT 552612 33 97.0 34 ................................T CCTGGGTGCTAGGACTTACATATACCCTGTATGC 552679 33 97.0 34 ................................G TTGTACGTGTATAGCTCCTGGGGGACTTTGCTTT 552746 33 100.0 34 ................................. AATCCTTTGGAGTAGCAGGTGTTTGATCCAATTG 552813 33 100.0 33 ................................. TGAAAATAAGCTACCAACTGTTAACACCTTCAA 552879 33 97.0 34 ................................T ACTGCTACGGTAAAATATTTTTGCTCGACATGAA 552946 33 97.0 35 ................................G TAGATACAAATGGGAATTACATTGGTTATACTTGG 553014 33 100.0 33 ................................. TCAAACGGGAAACTATTTTTGCCCTATCGCATG 553080 33 100.0 36 ................................. TGTCGTATAAAAAGAAGGAAAAAAGGAAAAAATGGA 553149 33 97.0 33 ................................T AGATGAACGTTTTTCCGACGACTCTTCGACGGA 553215 33 97.0 34 ................................G CAAATAGGGCTGGTTTTAGGACAAAAAGGACTTT 553282 33 93.9 0 ..T.............................A | ========== ====== ====== ====== ================================= ==================================== ================== 15 33 98.0 34 GTCGCACCCCACGCGGGTGCGTGGATTGAAACC # Left flank : CCGCAATTTATCAGCCATGTATTTGAGAAAGTATGTGAGGAACTAGGGATAGAACATGAACGGATCCCTTTTAAAACTCCAAACAAAAATGCACATATAGAAGCTTTTCACCGACTTTTAGAAGATGAATGCTTTAGCCGCTATGAATTTGCGGCCTATGCTGAGGTATATGAAGTAGTAGCACAATATATCAAGCGTTACAATAAGCAAAGACTTCACTCAAGCATCGGGTATGTGCCACCTGAAGAATTCTACAAATACCTTAGAGATGGCGAAAAAGTCTTGAAAATTACAATTTAAAACTATTTGTTTAACCTGTAAGAATAAAATCTTATGGTTTAAGAAAGGGTCAAGGTCGCAACGCGGCGAAGCGAAACCTTGACGCACTTCTTAAACCATAAGAAAATAATCAACAGGTTAAACAAAGATGCAATCGTGTGAAATCGTGAGAAATTAAGAAACTTTGTCCAAAATTCGGGGGTCAATCCGATAGTTTTGCT # Right flank : AATCATCCCAAGGGCATTTTGTTTGCTGTTGTACCCTTTACTACCATCAAATGAGCTGGCAACTGCATCTGGCGACCATTTTTCGTGCAGCTTTTACCTCTTTCGTATAGTTTGACTAAAACTTTGACAAAACGTATTTTAGACCCCATTCAACTTCTCCTATACTTCGCGAATTTTAAATCAATTCATCTTTTCCATTGCCAGAAAGCGAACTATATAGGAGAATAGAAAAAGTACCCTTAAATTTCTCAGGCAGCTTACGTATAATATTTATAACGCTTACTTGTGCTGGAGGGGTATGATGAAATCTTTGATAAAGTTTGTAGCAGGCCTAGTTACAGGGATTTTTTTTACCGTATTAATGATGAATTCCGGCTGGGCGGCGGGTTTTATACAGGAGATCAAGGTGCAGATTTTGCCCCTAAAATATTATTTTGATGGTATGCAAAAGGGTAATTCCGATGGGCAATATTTTAACGGCAATAAAAATGTACCTTTGG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACGCGGGTGCGTGGATTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1658835-1657077 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085524.1 Zhaonella formicivorans strain k32 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1658834 30 100.0 38 .............................. GGGACTGGCCCGTTTGCTTGCTCCCAAATCAATACATG 1658766 30 100.0 34 .............................. CCTGGCAAAGCGTGTTTTAGCCAAGGGGCGTAGG 1658702 30 100.0 38 .............................. CGGCCACAAACCTGGTCTGCTTGCCCAGTCCTTTGTCG 1658634 30 100.0 38 .............................. TGACAAATAAATAATCTATTTAAGGCCCGCCGGGAGCC 1658566 30 100.0 36 .............................. TCCACCTAACACCTATATTAGGATTTACGTCCGGCA 1658500 30 100.0 37 .............................. AACATTATACTCACTCCTTGGGGAAAAGTCCCAAAGC 1658433 30 100.0 37 .............................. TTTCATTTTTTACCTTGCTTGGCTTGTCACATTGCAC 1658366 30 100.0 37 .............................. AGGAGAACTAACTGCCCTTTGCCTTGTTCGTATTTGG 1658299 30 100.0 37 .............................. CCAATCTTCGTATGAAAATGATGTTTAAATTGGGTTT 1658232 30 100.0 36 .............................. AGCTCAAACCGGGTGAGTCAGTTAAATCTCCTGGGA 1658166 30 100.0 34 .............................. TTTGTCATTGGCATGTTCCTCCTCACGCTCACAA 1658102 30 100.0 36 .............................. GCGTAGACCAAGGGCTTTGGCAGTGCTATAAGTGCG 1658036 30 100.0 35 .............................. TTTCCCGTTGTATGGCCCGATGACTCAGCCGCCTG 1657971 30 100.0 36 .............................. TGCAATTTTTTCTTTGTATTCTTTTTCGATTTCAAC 1657905 30 100.0 34 .............................. TATTATAAATATAATAATACCGAGAATACAACGG 1657841 30 100.0 39 .............................. TCAAAAGTAGGAGCAGGATATTTACATCAATTGCAGGAT 1657772 30 100.0 39 .............................. GTCGGTGGGCGATATATAAAAGGCTCAACAGAGGTATTA 1657703 30 100.0 37 .............................. GAATATGTCGTTCATCTTACTCATCTCCTCCCTCGTA 1657636 30 100.0 36 .............................. ACTTTGAAATACAGGACATAATAGACATTTGCCACT 1657570 30 100.0 36 .............................. GCATACTGCTGACTGGTTTTTTAGTGCTTTATGCAG 1657504 30 100.0 40 .............................. TCACCTGCCCAAGGATAGCCAACATTATTTAACCATTCAT 1657434 30 100.0 36 .............................. TGATAAAAGCAAAATTTTATTTAATCATCATATCCG 1657368 30 100.0 34 .............................. TCACTTCTTTGTGTGGAAACCCATTTTTCAATAC 1657304 30 100.0 39 .............................. TCATTGAACCCAATTAGGTATAATGTTGCCTAATAAAAG 1657235 30 100.0 35 .............................. GTGTTCGCCCTCCATTCCCTTAAGGAAGGAGGTGA 1657170 30 100.0 34 .............................. TATGTCATTTTCTAACAAACCCCAGCTGAGATAA 1657106 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 27 30 100.0 36 GTTTATAGCCTACCTATGAGGAATTGAAAC # Left flank : AGGCTGTCTATGGATTTTCTAAGATCTGTGCTGCCGCAGGCCAGATATACTTCCTGGTTTGTAATTTCATTAATCATGGCTAGGTAAGCACCTCGATGATTTCACGCAGCAGCTTTGGGTCAAATCCCGGGGTTATTTCTATTTTTATTTGCCCAAGGGTAATGGTTATGCCACTTGTTTTGGCCGGGTTTTTAGGTACGGCTATCCATTTTATTTGGGGCTGGTCTTGCTTTTTTTCTGGCCGTAGTTTGCGGCGCCAGTAGAAAAACTGGTTGGTTCTGATATTGTTGTGTTTGCACCAGCTGGCAATGGTTTGGCCACTTTGCTCATGTTCCCTGAGCCGTTGTTCCCAGATTTCAGCTAGGTTTTTGTCCATCCCTGAACACCTCCATTTTTGTGTTCAGGTCTATTTTCTCAACTTTTGTTCTGTATTAATAGGTGTGGATTATTTGACGCTTACAAACCTTCGAGCCGCAATCGCACCGTGAGGCTCTCCGCAA # Right flank : GGCTGCACCACAACGCCGGAACACACCTTCATAAAGTACAGTTTATGTAAGCGTCAAAAAGAACACACCTATCCCTTAAGCCTTTAATCCAGTATTATTATCCTTAGATGACATCCTAACATTTTCAGGCAATGTTTCTGACCAGGGCAGCAGGCTGTCTACTATTTCCGGATCTGTAAGGTCAAGGTTTGGCATTTTTTCAAACAGGTGTATCAGATAGTTATAAGGTTTCAGTTTGTTCTCTTTGGCGGTCTCAACTATGCTGTAGATTATCGCACTGCTTTTGGCTCCCCTAGGGGTATTGGAAAACAGAAAATTTTTTCGACCAATCACAAAGGGTTTTATCGAGCGCTCCGCCCGGTTGTTGTCTATTTCTAATCTACCGTCTAATAAATAATGATTGAGTTCTTCCCATTGGTTAAGGCAATAGTTTATCGCCTGCCCAAATGCGCTTTTGGGCAGCGTTTGTTGTCTTTGTTTTTTAAGCCATATGTAGAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 4 1662602-1661319 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085524.1 Zhaonella formicivorans strain k32 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1662601 28 90.0 37 .....C.--..................... AGGTCTGAAGCAATTTGTTCTACTGCTGCGTCCGGCA 1662536 30 100.0 35 .............................. CGTGTTTTGTATTATCTGCCAAATGTGCATTAAGG 1662471 30 100.0 35 .............................. ACCGGGTAATGGTCCAGCATAACGCCGATAAGTTC 1662406 30 100.0 37 .............................. TGCTTATTTTCTTCTTTGATGGCATTTTCTATCTTTC 1662339 30 100.0 37 .............................. AGTATATTTTAAGCTTAAAACTCGGTCGTTAACTCAG 1662272 30 100.0 36 .............................. TTTGCCGTATTTCCCACTGGCACATTCCCGGCTCCT 1662206 30 100.0 36 .............................. TATGAACACCGTCTACCATATCTGCGTTTAAATTAG 1662140 30 100.0 36 .............................. CTCTATCCAACTCGATATAGGCCAAAGCAAGCTCGA 1662074 30 100.0 37 .............................. AAACAATCAAATCCCTCGGCTGCACTAATACTCTTGA 1662007 30 100.0 35 .............................. CGCTCCGGAGTTAGAAGAGCACTATTATCGCAAAA 1661942 30 100.0 37 .............................. GCCGCTCTTCTTGAGTGGCTTTTTCTTTTTGTATGAA 1661875 30 100.0 37 .............................. AACCCTTGACTTCATCAGCAGACAAACTAAAGCCATG 1661808 30 100.0 35 .............................. TGTGAAATTGAAAGGAAAGTAAAATGTATATATTA 1661743 30 100.0 34 .............................. TCATATAAATCGCTTCCATCTGTCCAGATAATTG 1661679 30 100.0 34 .............................. ATTTCCCATCCTTCATGCTTGGTAATTTCATCAA 1661615 30 100.0 35 .............................. CTTGGTATGTATAAGGGGCAATCTTGCGAACTAAA 1661550 30 100.0 35 .............................. TGATCTTCGGTGATTATCCCCGCGGCTTTTGCCTC 1661485 30 100.0 39 .............................. CTTCACTTTCCAAAACTGCTTTCGGTATGTCGAGTCCAA 1661416 30 100.0 38 .............................. GACTTTCCTTCACCTCAATAGCTATCCCCGCTACTATT 1661348 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 20 30 99.5 36 GTTTATAGCCTACCTATGAGGAATTGAAAC # Left flank : AAGGCCTCTATCCAGTTTAAGTTATTCATAAATCTTTTTTTAATGAACTGTAGATGCTGGCGTTTCAGGTTTAGAAGAACCTGTTTACCTGATGCAGCGCATTGGATTAATTTCATAATCACTCTTAGAGGTAGCTGATAGTAGGGTAATAGGAAGATCGGCAACAGGGAAATAGTTTTACAGCAGGAGGGGCAGAAATACCTGCAAACCGGTACTTTTACTGCCTTCTTTATGAGGTGTATATATCTCCAGTAAAAGCCATGCCTTTTTAGTTTTACTTTAGCTTTGCAGCTAGGGCATACTTCAAATGCCGGGAAATGATTCTCTATGCCTAGTTTAATGTATTTGGTCATACTGATTTTAAAGTCGTAAAGTATTTGCAAGATGCTCACCCTAATTCACTTTGACAAAATTATATCAAATAAAATTAGGGATGCTTAGCCTTAAAGGTAAATAGAAAATGAAAAATCTACTCCGGTTTTGGAGTAGATAAATTAAAA # Right flank : CTTCGTAAGCGTCAAAAAGAACACACCTATCCCTTAAGCCTTTAATCCAGTATTATTATCCTTAGATGACATCCTAACATTTTCAGGCAATGTTTCTGACCAGGGCAGCAGGCTGTCTACTATTTCCGGATCTGTAAGGTCAAGGTTTGGCATTTTTTCAAACAGGTGTATCAGATAGTTATAAGGTTTCAGTTTGTTCTCTTTGGCGGTCTCAACTATGCTGTAGATTATCGCACTGCTTTTGGCTCCCCTAGGGGTATTGGAAAACAGAAAATTTTTTCGACCAATCACAAAGGGTTTTATCGAGCGCTCCGCCCGGTTGTTGTCTATTTCTAATCTACCGTCTAATAAATAATGATTGAGTTCTTCCCATTGGTTAAGGCAATAGTTTATCGCCTGCCCAAATGCGCTTTTGGGCAGCGTTTGTTGTCTTTGTTTTTTAAGCCATATGTAGAATTCTTCCAATATTGGCTTGGATATTTCCAGCCGTTTTTGATATC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 5 1666712-1666077 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085524.1 Zhaonella formicivorans strain k32 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1666711 30 100.0 34 .............................. TTCGCATCAGGCCCGGCTTGAGCAGACGGGACGC 1666647 30 100.0 37 .............................. TCGGCAAGCCTGCCAGCTTTACCCCTACTGTTCACGG 1666580 30 100.0 37 .............................. TAGCAACCTCTTGCTAAACGGAGGAGCCGGGAATGTG 1666513 30 100.0 38 .............................. CCTACTGTTGCAGCTGCTAACTCACGCCTTGCAACAGA 1666445 30 100.0 39 .............................. ACGGCTTCTGCGACTTCCGCTACTTCAATGCCGCAGCCT 1666376 30 100.0 34 .............................. GATGATGTAAAGCAGGCTATAGAGGAGATTAAAC 1666312 30 100.0 38 .............................. TTGACAAGGCAATAAGGTATAGCTTAGATCACTTGCTA 1666244 30 100.0 38 .............................. CATGGGATGACTTCGAAAGCGGGGTGTGGCTAAATGCC 1666176 30 100.0 40 .............................. TAGCTTTTTCTCTTGCAACATTATCCATGATACGAATTGG 1666106 29 83.3 0 ...............-..T.A.T......T | C [1666080] ========== ====== ====== ====== ============================== ======================================== ================== 10 30 98.3 37 GTTTATAGCCTACCTATGAGGAATTGAAAC # Left flank : TTTTGTCGCCAGGTGGTAAAACCTTGAGTAGGTGAATGGAATGTTTGTAATCCTGGTGTATGATGTGAATGTTAAAAGAGTCAATAAAGTGCTGAAAAAAGCCAGAAAATACTTGAACTGGGTCCAAAATTCTGTACTGGAAGGAGAGATCAGCGATGCCAATTATAAAAAGCTAAAAATGGAGTTGCAAAAAGTAATCAATGAAGAAGAGGATTCCTGTCTTTTTTATACCTTTAGGACAACAAGGTATACCAATCGGGAGTCCATGGGAGTAAAAAAAGGCGGAGAAGGAGTTTTTATTTAGCTTATAACTGTCGTCGAACTACAGTAGTGCAAAAAAGCCCAGGGTTCGACGACAACCAGCAGGACCTTGTATCCCTTGCGAGATCTGGAAGTCTGGACAGTTATATGGATTTTTGGCTATTGACATTAACAGTTGTACAAAATATCATTAAACCTAAGAGGCTTGAAAAGCCTAAATTTTTTTCACACCAGAACGG # Right flank : TAAAAGGGATGACATTTTGCAAAATAAAATGGATTAAAATTAGCTTGAATTTATCGGTTTTTGCGAAATAAATTAGCCAAATGGGCAAAATTTTTTCACATAGTCACAGTATTTTAGTTAAGATTTTTGCCAAAAAAAAAATGCAGCTAGGATGCCCCTAACCGCATTCTGACATATATTCCTCTGCCAAGAATCACTCTTTCTAAACCCCTCTTACACTGTACCTTGATGCCGGATGCAGATAAAACATAGAGTTAGCAAAGTACAATACCCAATCCCTATCTATTTCAATACGACAAGGCAAGAATGTTTCCCCAACCTTAATCTCAAAGCATTCCCCACAGTGTAGAGAGAAAGGTTCGTCGTCTATTCCATGGATCTCCCAACGGTCCTTTTGGCTAGAGTATAATAGTTTACCTTGTTTTAGCATTTTAATTTAAGCCTCCCTCCTCGGGCAGATGCCTAACAGTGAAGGATATGTGGCTTTGTCATATCATAAG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //