Array 1 36890-36742 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRWM01000032.1 Pseudomonas aeruginosa isolate LRJ16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36889 28 100.0 32 ............................ GAAGCGACTTAGCACAACCTCCTCCAAGACTT 36829 28 100.0 32 ............................ ATCCGGTTTGCGTAGACGCGGTTGGCGATGCG 36769 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGTGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCTAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCTCGGCCTGGCCGGGGGCGTCGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGCCCCGGCCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : TCGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGACTTCGGAATGAACTCTTCTCTCAGGCTCATAGCGTCTCTCGTGGTCTTTCCCCGGCAACTCCGCACACCTGTCAGCCATGTCTCCGGTCCGTACAGACGCTTGCAAAAGGGACTGGCCTGGGAGGGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCAGCACATTCAGACTCAAGACCACGAGGGCAGAAAACTGCCAGCCTCAGGCCGGCAACAACGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGGCTCGTCGCCATCGCAACGCGATGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCCCATGGGCTGCGGCGCTCCAGCAGCAGGGCAGCGAGGCGG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 303206-304212 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRWM01000001.1 Pseudomonas aeruginosa isolate LRJ16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 303206 29 100.0 33 ............................. TTCGGCATTGTGCGCGGTAGCCACGTACCCTGG 303268 29 100.0 32 ............................. CCGAACTGATTGCCGCTGGCCAGGTCCTGGTC 303329 29 100.0 32 ............................. TTGCCTGAGTTCCGCAGCGCGGCGATCAGCGC 303390 29 100.0 32 ............................. GACTTGGCCGGCTTGAAGAGCTACCTGGGCCA 303451 29 100.0 32 ............................. CCGTTGATCAGCAGGCCGGTGTTAGGCCCCAT 303512 29 100.0 32 ............................. ACCTGAAGCGCGAAATCATCCTGTCTGACGTG 303573 29 100.0 32 ............................. GCGTGACGAATTGGCCCGACAGTTCAACAGCG 303634 29 100.0 32 ............................. ACATAGCGAGACCTTGGCCGATCAACGGCATC 303695 29 100.0 32 ............................. CAGATCGAGAATGCCCAGAAGGGCATTGGGCG 303756 29 100.0 32 ............................. CGTGAAGCAGGCGGACCAGATCATGACCGACC 303817 29 100.0 32 ............................. CAGGCGCGCGATTCCGTGGCTGGACTCGGTGA 303878 29 100.0 33 ............................. GTCACGGTGAACGGCAAGGGCCTGGTCACCGGC 303940 29 100.0 32 ............................. CCGCCATGGCCGAGCGTTCGAGGCGCACCGAG 304001 29 100.0 32 ............................. AACCATGCTGGCAGTTCTCTCGACCAGCAGGG 304062 29 100.0 32 ............................. AACGCGGCGCGCGAACGCCCATCTTCCAGAAG 304123 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 304184 28 79.3 0 A..........A..C..-.....A....T | C [304188] ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGGTGAGGTGGTGGGTCGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATTTCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCGGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGTTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGAGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGCGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 313385-314818 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRWM01000001.1 Pseudomonas aeruginosa isolate LRJ16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 313385 29 100.0 32 ............................. GCCCTCGCTCAGCCGTCGACCGCGTCAACGCA 313446 29 100.0 32 ............................. GCGTGTCGGCTACCTGCTTGCTTCTTGGGTGG 313507 29 100.0 32 ............................. GCGTATCAGCGCAGCTCGATGTCGGACGACGA 313568 29 100.0 32 ............................. GACCAGGTCACCGCAGCCTATGAGGGGGAAAT 313629 29 100.0 32 ............................. GCCTCGCTGGATGACTTCGTCCGCACCATGAT 313690 29 100.0 32 ............................. TTGGCGGCTTGGTAGACGATCCCCCATCCCCC 313751 29 100.0 32 ............................. CAAGTACTCGGAAACTAGGAATCCATGGCTAC 313812 29 100.0 32 ............................. TTCTGTTCCCCGACCGCCGTTTGACGGTCGGG 313873 29 100.0 32 ............................. TGCTTGGCCGGCACGGTATCGGCGCAGCCGCG 313934 29 100.0 32 ............................. ATTACGAGCAGAAGCGTATAGCGTGTGCAGCA 313995 29 100.0 33 ............................. CACAGAATGCGCTCGCTTTTACTGAGCAGTGGT A [314017] 314058 29 100.0 32 ............................. TCGAATGGCAGCCAGTCGGGCGAGGGGCCGCC 314119 29 100.0 32 ............................. AGGTGATGCTCAACGACGATAAGCCCGTGATG 314180 29 100.0 32 ............................. GCGGTTTCATCACCAGCGCTACTGTCGGCGAG 314241 29 100.0 32 ............................. ATGCGAGCCTGGGCCGGACCATCCATGTGCTC 314302 29 100.0 32 ............................. TAAAAGGTGCAACACCCCTTCCTAGGCCTGTG 314363 29 100.0 32 ............................. ACGGTGATTGCGTGCCGTTCCATGACCGGAAA 314424 29 100.0 32 ............................. TCCGCGCGCGGAGTACACCTGACGGACCTGGC 314485 29 100.0 32 ............................. TACACAGCCGGGGACTCTGCCGCGAATCGTCA 314546 29 100.0 32 ............................. GGACGATGTCTCGCGTAGCGATCTCGCTCGTC 314607 29 96.6 32 .........................G... CCAACAGGTAGCCAACGCGCCTGGCGATGGTC 314668 29 100.0 32 ............................. AACGCCCTTTCCAACTCATCAGCGCCAGCAGG 314729 29 100.0 32 ............................. GCGAACCAGGTGCGCTACGGCGACATCGTCCG 314790 29 89.7 0 .G..........G..A............. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.4 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGGCCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAGCCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGTCACAGGACGCAAGGGTGAGCTTCCTGGCCGTGGTGGTGGAAAACGTCCCGCCGCGCTTGCGTGGACGTCTGGCTATCTGGCTACTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCAGCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGTGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGTTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCATGGGGCGAGTCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCCTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACACCCTTGTCGATGGCGGGTTGGGCGGGAACCGGCCAGAGCAGGGAGAGGCCGGGTTGGCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //