Array 1 194504-195263 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDMD01000003.1 Salmonella enterica subsp. enterica serovar Rubislaw strain 222 NODE_3_length_454847_cov_22.6128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 194504 29 100.0 32 ............................. CCGTCCACGGTACAACAATCAACGCCGGGAAT 194565 29 100.0 32 ............................. ACTGACAAACAGCGTGAGCATATCGCGCAACT 194626 29 100.0 32 ............................. TCTTCAGAAATGATGAGTTTTTCCAGTCCGTC 194687 29 100.0 32 ............................. TGTCGGACAGTATCTGGTTGGCTATGGGGGGC 194748 29 100.0 32 ............................. GAATTAAACGTTACTGGCATGATACCGTTCGG 194809 29 100.0 32 ............................. GTTTCGCAGGTACGGTTAGTCCGGCCAATTCA 194870 29 100.0 32 ............................. GCGACGGCGTTTATCAGTGCGAACAGGACCAG 194931 29 100.0 32 ............................. TTTTAGACATGGCAAACGCCGACAGGATGAGC 194992 29 100.0 32 ............................. AATCAGAAACAAACAAGACTTACTGGATGTTG 195053 29 100.0 32 ............................. GGCGTCGAACCAACAGTGCCCGGGCAGGATAC 195114 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 195175 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 195236 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTATAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 211408-212821 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDMD01000003.1 Salmonella enterica subsp. enterica serovar Rubislaw strain 222 NODE_3_length_454847_cov_22.6128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 211408 29 100.0 32 ............................. GATGTGTCAGGAACGATGCAAATTGCGGACAG 211469 29 100.0 32 ............................. AGCTATATGTCTGACCGTGACGGGTCGGTTCG 211530 29 100.0 32 ............................. CGTCGCTTGCGTCCGGTCAGCGTGCGGGCGGT 211591 29 100.0 32 ............................. ATCGCGCCCTCATCTCCCCAGATTTTTGATAC 211652 29 100.0 32 ............................. TATCACTACCGGATCGGATCGGCTGAATTGAA 211713 29 100.0 32 ............................. AATATATAGTTATATATATGTTAAATAACCTA 211774 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 211835 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 211896 29 100.0 32 ............................. GTTTCTCCCTTGAGTAGTTCCTTTCGATAATT 211957 29 96.6 32 ................A............ CAAAACTGGATTAATGAGGACGGGTACGAAAT 212018 29 100.0 32 ............................. TTTACCCCCTGTTTACTGCAATAGCGCGGATA 212079 29 100.0 32 ............................. GTCGCGGGTCGTGTGTCTGTTTTATTTGACGT 212140 29 100.0 32 ............................. CCATCTTTTTCGCGCCTTGTTGGTCAGGCAAT 212201 29 96.6 32 ....A........................ CACATCTCCAAACTGGAACGCGCCAACGCTGC 212262 29 100.0 32 ............................. GAAAACTCTAAATCCAGCACGATTCGTTGTTT 212323 29 100.0 73 ............................. CTATTAATGCAGATTCTAAAAGAATTGCAGAAGTGTTCCCCGCGCCACCAACTCCTTGGGGGAAAACGGCTTG 212425 29 100.0 32 ............................. GCCAGCGCTAGCGCGCTCGCGAAATGGGAGCC 212486 29 100.0 32 ............................. GCTATTGTGATGCAGTCAATGCAATGGGGTAT 212547 29 100.0 32 ............................. GCCATACCCACAACCTCCAGACGCCCAAGCCC 212608 29 100.0 32 ............................. CAGGAGGAATCAACTCTCGACCCTGCTGAACC 212669 29 100.0 32 ............................. TTTACGGGCGCACAGCGAAAACTACCGAGGAG 212730 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 212792 29 86.2 0 TAA.........T................ | A [212816] ========== ====== ====== ====== ============================= ========================================================================= ================== 23 29 99.1 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAGATGATTTGGCAACAAATCACGCAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAATCAGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTGGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTTGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //