Array 1 94994-94475 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEDL01000004.1 Escherichia coli isolate JHI_5035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 94993 29 100.0 33 ............................. TATTCGAGAATATTAATCTGTCTATATATGCGC 94931 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 94870 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 94809 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 94748 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 94687 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 94626 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 94564 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 94503 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGGTTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGAGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112354-110496 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEDL01000004.1 Escherichia coli isolate JHI_5035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 112353 29 100.0 32 ............................. TCCGTAATAGCCGAACAAATCACCGAGTTTGA 112292 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 112231 29 100.0 32 ............................. TTTTCGGTAGTCGCGGCGGCGGGTACGTGATT 112170 28 96.6 32 .................-........... ATGATCGCCGCCATGATTACTTGCCTTTTTTG 112110 29 100.0 32 ............................. CCGCCCATTGAATTAGCGAGGCGCATAATAGT 112049 29 100.0 32 ............................. TCCGAGCGCGTAATAGCGCGCGCCCGGAAACA 111988 29 100.0 32 ............................. TGCCAGGAGTGTTTTGATAAATATATTAGAGA 111927 29 100.0 32 ............................. CGTTGACCGCCATCAAAAATGGTACAACCTCG 111866 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATCAGA 111805 29 100.0 32 ............................. TAAATTAAAAATCGCCCGCACCGACTACCGAT 111744 29 100.0 32 ............................. CGGGCTAGTCCGTTGTGATCGCTGCGGCCACG 111683 29 100.0 32 ............................. ATTATCAGCGTTTACTGAATATCGATCATTAC 111622 29 100.0 32 ............................. TTGGCTGGGGCCGGAATCCGGCTGGCGGGGAT 111561 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 111500 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 111439 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 111378 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 111317 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 111256 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 111195 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 111134 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 111073 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 111012 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 110951 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 110890 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 110829 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 110768 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 110707 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 110646 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 110585 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 110524 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATATATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //