Array 1 44881-46800 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYHG01000010.1 Salmonella enterica strain BCW_5890 NODE_10_length_170752_cov_4.57801, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44881 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 44942 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 45003 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 45064 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 45125 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 45186 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 45247 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 45308 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 45369 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 45430 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 45491 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 45552 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 45613 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 45674 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 45735 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 45796 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 45857 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 45918 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 45979 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 46040 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 46101 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 46162 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 46223 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 46285 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 46346 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 46407 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 46468 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 46529 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 46590 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 46651 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 46712 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 46773 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62933-64470 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYHG01000010.1 Salmonella enterica strain BCW_5890 NODE_10_length_170752_cov_4.57801, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 62933 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 62994 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 63055 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 63116 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 63177 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 63239 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 63300 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 63361 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 63422 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 63483 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 63544 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 63605 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 63666 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 63727 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 63788 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 63849 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 63910 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 63972 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64075 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 64136 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 64197 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 64258 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 64319 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 64380 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 64441 29 96.6 0 A............................ | A [64467] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //