Array 1 202948-202228 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMJ01000001.1 Micromonospora yangpuensis strain CGMCC 4.5736 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================================== ================== 202947 28 100.0 33 ............................ CGGCTTGACGGTCGGATGCGCCACCCCGTCGAC 202886 28 100.0 33 ............................ CGGCTTGACGGTCGGATGCGCCACCCCGTCGAC 202825 28 100.0 33 ............................ CTGCCCGCTCCACCCTGGCCAGAACGGCCGGGT 202764 28 100.0 33 ............................ GGTGGCGTCGGTGGGCACCCAGCCTGCGGCTTG 202703 28 100.0 33 ............................ GTTCAACTCGGCCTCGGGTCTGGTGGCGAACCA 202642 28 100.0 33 ............................ GGCCTCGGACTGGATCCGATGGCGCTCATCCTC 202581 28 100.0 33 ............................ CTCCACCTGGTCGAAGCCGACCGACGTCTCCGG 202520 28 100.0 33 ............................ CGGTCAGCGAGGCGCGGAGTCGCCGGACCCAGT 202459 28 100.0 53 ............................ GGCGATTACGCGCGGGTCCTTGCTGGCACTGGCCTCTTCCCCGCCCGCGCTAC 202378 28 100.0 33 ............................ CGGACATAGGGGGGATACCCCGCCCCCGGGCCG C [202365] 202316 28 100.0 33 ............................ CCCGGTGGACGTCAGCTACCGGCTCTCGCCCGC 202255 28 96.4 0 .....................A...... | ========== ====== ====== ====== ============================ ===================================================== ================== 12 28 99.7 35 CTCTTCCCCGCCCACGCGGGGGTGATCC # Left flank : GCGTGACGGGCACGTCGGCGCGCCTCACCTCCCGAAGACGCCCATCGCGTTGACGATCCCCATCCGTCAGGACTGCCTCCACCCCGCCATCGGGGGCAACTTCCTTGTTGTAGTGGTCTCGGGGGTGCTCGTGGGGACTGTTTCCCGGTTGTTGTGGGGCATCCGTGACGGCAGATTCCCCTGGCTGCTACTTGGCGTCACACCCGTGACGTGTCGGATCCGGAAGCTGCGCTCGTTCCCGGCCGGCCGCGCGGCAGTACGAGGTGAGCCGGCGCAGTCGTCCCTGCGGCCCGCTCCTTCCCAAGGACGAGGGACCGATTGAGGATCGTCAGGGCGAAGCGTGTGTGCCGTCGGCTACTCGTCCCCAGTAATGTGGTGAGTTCGCGGCCGGCCTTCCGGTCTTCTGCAGCCTGTCACCACGGTTGACCTAGGAGGCGATCTTGGGCAGCAAAGTGAATGAAAACGAGGAACTTGATCTTTAGCGCCCCAGGTCAGGAAGC # Right flank : CGCCTCTGCAGGGCCGGTCGTTATGGGGTCAGGCCGATCAGCATCGCCAGGCGGGTCACGCCGGCCACCGCCGGGCCGTCCCGGGCGATCCGGGCCAGCAGGGTACGGCCCACCGGTCGGCACCGGACCTCGGTCGGCGCGGTCCGGTCCGCCTCGACCAGCATCCGCCCTGCTCCGGCGAGGTCACCCAGATCCAGGTACGCCCGTGCCATATCGAGCAGGTACGCGGCCCGGTGCTCGGGCGGCAGCCGCTGCCAGTGAGGCTCCCTGGTTACCTGCTCGTGGCCGCGTACCGCCTCGGCGGGCTCGCCCAGCTCGACGGCCGCCGCCACTCGGGCCAGCGCCACCACGGTCGGTCCGAACGCGAGCTGATGGTGGTCGTCGCCGTCGCCGAGGCGTACCGCGATCTCGGTGGCTTGCCCGACCAGCTCCGCGACGCCGCGCGGGTCACTGCGACCGGCGGCGGCGAGGGCGGCCTGGAGCAGCAGCGACCCACCGAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCCCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 58758-57143 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMJ01000018.1 Micromonospora yangpuensis strain CGMCC 4.5736 sequence18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 58757 28 100.0 33 ............................ TTCGTCTCCACCGTGGCCAGTGCCAACCGCAAC 58696 28 100.0 33 ............................ CGGCCGGACGGGCAGGGCCAATCCGAAGGCGAT 58635 28 100.0 33 ............................ GGAACTGGACTTCGCGGTCACGCAGGGCAAGGT 58574 28 100.0 33 ............................ TGTGGTCAGACGGTCAGCCGATCAGGGCGTCGA 58513 28 100.0 33 ............................ TGCGCAGGCGGTATTCCGGGAGCGCGTCCCTCA 58452 28 100.0 33 ............................ TCCGGGCGGAGCTGGACGCGGTCTACCCGGAGT 58391 28 100.0 33 ............................ CTACGTCTCACCCGCTGCCGGCGTCTCGCTGGC 58330 28 100.0 33 ............................ CGGCACATGCCAACGGGAGGGATGACCATGGAT 58269 28 100.0 33 ............................ CAGCAGCTGCCTGTTGGCGGACATCCCGAAACG 58208 28 100.0 33 ............................ CACGGGCCGCGCGGGCCGGTCGGCCAGGGAGAG 58147 28 100.0 33 ............................ CGCCCAGCACGGTGCCGCGATGGTGCAAGCAGT 58086 28 100.0 33 ............................ CTGGGCGTCCGGTTAAACTGCCCCCGATTGAGA 58025 28 100.0 33 ............................ CGGTGTTTCTACGGGCCAGTCGGTGGCGGGTGC 57964 28 100.0 33 ............................ CGGGCGCAGTAGACCCAACCGTTGGTGCTTGCT 57903 28 100.0 33 ............................ CTTTGCCAGTTCCTCCCCGGATCGGTGGAGCGC 57842 28 100.0 33 ............................ CCACCTCCGCCGACAGACCCAGGAGGGCCACCG 57781 28 100.0 33 ............................ CGAGCGCACCAGAAGCTCTTCGGTGTCCTCGTC 57720 28 100.0 33 ............................ GCGCCAGAGCCGCCTTCCTCCCGGCCTTGATCG 57659 28 100.0 33 ............................ GGGGCCGGGCGGTATGGACAGACTGCTCGCCGA 57598 28 100.0 33 ............................ GGACTGGCAGCATCCGCGCCCCCGGGGTCGGGG 57537 28 100.0 34 ............................ GGAACCGTGAGCGACGTGGTCGAAGACCTGGGAT 57475 28 100.0 33 ............................ GGCACCGGCGACCTGGACATGCTGGAGCCGATC 57414 28 96.4 33 .....T...................... CGGGTCACACACCAGCCGCCGGTACGGCAAGTC 57353 28 89.3 33 .........A....C.........G... CGTGGCGACCTGGATGGTGGCCATCGCCCTGGA 57292 28 89.3 33 .............GCT............ CGTCGCGCAGCTGGCGTCGCCGACCACGTGAAT 57231 28 85.7 33 ............T.C.T.......T... CCCGACGCTGCCGTCCACCGGGTCGTGCACGTC 57170 28 85.7 0 G...........T.G.........G... | ========== ====== ====== ====== ============================ ================================== ================== 27 28 98.0 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : GAACGCTTCATCCCGGAACAGCTCCTCCCCAGTAGGAGCCCCACTCGGGAAGCACTCGTCGCCGAGCACCAGCAGACGGTCAGCGACGTTTCGGCACCTGGAACGGTCCCCCCTTGCTCCCCGAACGACCCGGACCACCCCCGCGTACGCGGCGCAGGCACCACGCGCAGTGCTAATCGAAGATCTCGCACCGATCACCGCCGACACGTGACCTACAGGTGAATCTTGGACACTTATCTGGGGCCGTCGGGGGGCGACGGGCGCAAGATCGCGGATGGCAAGCGCGTACGCCAGGCCACGGGCCGGCCGAAAACTCTTCGGGTCACACCACAAGCGAGTCGACCGCCGCCCGGGCGTCGGCTGTGCCGGAAAGCCCACCGGTACGCTGAGCCCACCCGCACGCCCCACCTGCCCGACACCCGAGGGACTGCATGGCGATCCTCAGAACCAAAGTGAACGAAAACGAGGAAGTTGATCTCTAGCGCCCCAGGTCAAGAAGT # Right flank : CGTTGACGCTGCTCAGAGACGGCGGATGTTGATCTCCACGGTGGCGTTGGCGGGGCTGCCGAAGGCGTCGAAGGAGGTCGGCTCGGCGCGGCCCGACTCGAACTGCCGCACCAGCCGGGAGCCCAACCAGACGCCCACTGCGCCGACGGCCAGCGCGGCCACCTCGACCGCCAGCAGCATCGGCGAGACGCTCCGCTGTGGCGCGGCGGCCCGGATCAGGCAGGTGAGCAGGAACAGCCCGGCCATGGCGGCGTTGACCAGGTTGAAGGTCAGCGCCGTCCGGCGGGTCGCGTCACCTGGTACGTCCCAGAGGTCGACCATGCCGGCGATCACCGTCAGCGCGGCGGCGACCAGGGCGGCGACGGTGGTCCAGTAGCCCACCTCGCCGAGGAACGCCGGGCCACCGGCCACATCGGCCAGGTCGAAGACGGTCGCGCTGACGAACAACCCGAACGGGAACGTCACCAGCATCGGTTGGATCGGATGACCGTGCACCCGCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 19645-19085 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMJ01000009.1 Micromonospora yangpuensis strain CGMCC 4.5736 sequence09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 19644 30 100.0 35 .............................. ATGTCGGAGACCAGGGCGCTCGCCAGATTCTCGAC 19579 30 100.0 37 .............................. GTGGCCCAGAGCTGGCCGTGGGCGGGCACCGCGTCGA 19512 30 100.0 37 .............................. GTGGCCCAGAGCTGGCCGTGGGCGGGCACCGCGTCGA 19445 30 100.0 36 .............................. AAATCGTAGGAGGGGTCGGCCCCGTCCAGGTCGAGG 19379 30 100.0 37 .............................. ACGTAGAGCTTCGTGGCCCCGATCGGCTGCTGCGTAC 19312 30 100.0 36 .............................. GTGTGCTCCGGGTCCCATCCCCAGGGGGTGCGGCAG 19246 30 100.0 35 .............................. CCGTGCCCTCCGACGGCGTGCCTCGTGCCGTACGT 19181 30 100.0 37 .............................. GCTGCGTCCTGGCTGGCCTCAGCGTGATCTACCACCA 19114 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 100.0 36 GTCGCTCATCGTCCCTGGAGGGATCGCAAC # Left flank : GAACACGACGGTTCTGGTATCCCGCGCCAGGAAAACGTAGCAAGCCCACCGGTTCACCTCGCCAGCAGCGCGACGGGTTGTCGGTTAGTCGACAGAGGCTGCTGCGGTGTTGATCCAGCCGGCATGATCCAGCTTCGTGAGGGGGCGATGCAGGTCGCCACCTACCGGCCGGCAGTTCACGAGCGCACGACGAGAGCCAACCCGAGCGCCCACGTTTCGACGCTCACCGAGCAGAGAAGATCGGGTACGGCCACTTCCCGGTGATCACCAATGCCGCATCGTCATCAGTCCATCGCTGTTCTGCCACCCTCGGCGTCGGCAGTGAAGGTCCAATTGGGCGGAGGTTGGCCGGCGGCGCCCCGGACGGCTTGGGGTTCCACCTGACCGGACTCACCTTGGTCAGCGCTCTCACCAGCACAGATGCACAACCGCCGGTCCGCTGCAAAAATGGCACCAGCAGGCGCATCGACACCTACCCTGACCTGCAACTTAAGGTTCGG # Right flank : GGTCATCTCGGCGAGCGGTTCCCGGCGGTGGCTCGTCGCTCATCGTCCGGGCTACCCTGCCCGGAGGGTGAGCAGGGTGATCTCGCTCGGCGCGAAGATCCGGAATGGCGGACCCCAGAAACCGGTGCCCCGGCTCGTGTAGAGCTGGGTCCTGCCGTGCCGGCTGAGGCCCTGCACGACCGGCTGGTCGAGCCGGACCAGGTAGTGGAATGGCCACATCTGGCCGCCGTGGGTGTGCCCGGACAGCTGTAAATCCACACCGGCCGCGACCGCGTCGTCGATCTGCTTCGGCTGGTGCGCCAGCAGCAGCACGGGCAGCCGCGGATCGGTGCCGGCGAGCGCCGCGGCGTGGTCGGCGCGGTGACCGGCGACGCCGGACGAGGCGGCGGTCACGTCGTCCACCCCGGCGACGACGAGCCGGGCACCGTCCCGCTCGACCACCAGGTGCCGGTTGTGCAGGGGCTCCCAGCCGAGGGTCCGCATGTGGTCCACCCAGCCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCATCGTCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //