Array 1 5283-4476 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMY010000199.1 Serratia marcescens strain A16 Contig_199_52.2564, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5282 28 96.4 32 .............C.............. AGATGAAGGGCCACCGGCTTGATAACCCTCTT 5222 28 96.4 32 .............C.............. TTCATGGCCGGAACCTGTTATTTTAAGGAAGT 5162 28 100.0 32 ............................ GCTGGTGGCCGACATTTTGCCGATTGGCACCA 5102 28 100.0 32 ............................ AATGCCAGCGATCTGTCTACTGCGTCGGGTAA 5042 28 100.0 32 ............................ AGCAGGGCGAGAATGGTTTCCGGTGTTGCGTT 4982 28 100.0 32 ............................ GGCTGCGCCTCCCGGTTAGCCGCACGCACCAT 4922 28 100.0 32 ............................ CGGGGCTATTGCGCAGTCTACTCAAAATAACG 4862 28 96.4 32 A........................... GGTTACCCGGTACGTGCGGCACAGCAATAAAG 4802 28 100.0 33 ............................ AAAGCAGAAAAGAAATGGCTGGACGAACTGCAA 4741 28 100.0 31 ............................ TTGACCGCCAGGGACACGAGCGAATCGCGTA 4682 28 100.0 32 ............................ TTTGCATCGTCCGGCAGGGATTCACTGTCGAG 4622 28 100.0 32 ............................ ACTGACGCAGCACTTGCAGCTATCCAGGCGCA 4562 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 4502 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 15055-13764 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMY010000199.1 Serratia marcescens strain A16 Contig_199_52.2564, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15054 28 100.0 32 ............................ GCGACAATTACTCGTTCGAAGTGCATTTTCAT 14994 28 100.0 32 ............................ TGACGGAGACTATCTCACAGAGGAAATGAGCC 14934 28 100.0 32 ............................ GCGACGACATGGGGCCAGAAAAAACCACCATT 14874 28 100.0 32 ............................ ATGGGAAAAGCACCACGCCCTAATGCGCGTCT 14814 28 100.0 32 ............................ TTAACAGGGCGGAAAAACGCGGTCAAGCGTAA 14754 28 100.0 32 ............................ GCCCTGGGCGGAGGTAGCCACAAAGGCGCATA 14694 28 100.0 32 ............................ TGGGTGATGGCGTTGACATCTTGCAGCAGCAG 14634 28 100.0 32 ............................ GCAGGGTCATGCATCGCATTATTGCCGTTGAA 14574 28 100.0 32 ............................ GGCAGGCAGTAAGGCGGCGAAGAAAGAAAAGA 14514 28 100.0 32 ............................ ACGCGGGAACCGTTCACGGCTTCTTTTGCTTT 14454 28 100.0 32 ............................ AATATGTCGGAGCTTACAACACGCTCCACAAC 14394 28 100.0 32 ............................ CTTCACGTCCAGCGTAAGGCCGTCAGACCAGT 14334 28 100.0 32 ............................ CAGTGGACGTACTGTTACATCGACTCGAGAAA 14274 28 100.0 32 ............................ AGATGGCGAGCGAACTGATACATGATACCTGT 14214 28 100.0 32 ............................ GATATATTCAGAGGGACCCGTTCTATCACCCC 14154 28 100.0 32 ............................ TGCAGGCCCAGCAATTCCATAACGCTGCGCAC 14094 28 100.0 32 ............................ GTGAAGCGACATTCTCCGGCAACGTGGACGCC 14034 28 100.0 32 ............................ CTCAGCGCGCACGATGAAGTTAAACTCATCGC 13974 28 100.0 32 ............................ TTTGACTACAGCATAGCAATGTAAGGAACCCA 13914 28 100.0 32 ............................ AGAGAGAAGATCTCTAAGGGATCGAGTGTTTA 13854 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 13794 28 96.4 0 ....................A....... | G,A,A [13767,13771,13773] ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGCCTGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //