Array 1 500-1181 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000011.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 500 30 100.0 37 .............................. CAATATAATATTACCTGGGGGCAATTCCTTCATGACA 567 30 100.0 36 .............................. TAGCGTGTCTAAGTCTCTTAGGCTCCTTTGTCTGTT 633 30 100.0 36 .............................. AGTAAACTAGGTATGTTTGTTGTATCTTTGTATAGA 699 30 100.0 35 .............................. TTTATTTCTAAGCAAGCTTGGTATTCTAAGTAAGC 764 30 100.0 34 .............................. ATTTATTATTTCCTATAAGGACTTAGACGGCAAA 828 30 100.0 37 .............................. ATAGGATTAATTTTAACAAGTGTACAAACCTAGATTA 895 30 100.0 34 .............................. TTATATTTTGTTAATAAAACGACTCCAATTATAA 959 30 100.0 35 .............................. GGTGTTATTACGCTTATGCCTGCAAACTGATTCAT 1024 30 93.3 34 ...T............A............. TTTAAGGTTTTGCTATTTGTTTTTACTTGTTTGC 1088 30 96.7 34 ................A............. AGCTCCAGAGCAACCACTTTGTATCTTATCCCCG 1152 30 93.3 0 ................A...A......... | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 98.5 35 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AAAAAATTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAATTAGAGAATGGCTTAACTACAGTGGTTGAACCTTAACATAGGATGTATTTAAATTTAAGTAACTCTGCTAATTGTTGAATAACGTCCTGTTGAACCTTAACATGAGATGTATTTAAGCAGAGAACCAAGATTTAAAATCTTGTGTGAATCGCTTACTCTTCCAGTACTCCTTCGACAAAGAGAGAAGGAGTTTCATTTTCTAATCAACTCTCAATAACCAAAACCTCCTACTGGAATATAACTCTAAAAACCTTCAATCTAACATTATTTTTTCCAACCTCCCCTTAAACAAAAACTGCTTTAAACCATTGAAATGTCAAGGTTTAAAGGGTGTTTTTTATCAACTTTTGAAAAAGTACAAATCGATTGGAAAAACTTCAGAGAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAAATAAGGAATGGCTTAACTACAGTGG # Right flank : TGGTGTTTCGCCACCATTAAGGGCGACCGATAATAGAGTTGAATCGCTTACTCTTCTAGTACTCCTTCGACAAAGTGAGAAGGCGTTTCATTTTATAATCAACTCTCCATAACCAAAACCTCCTACTGGAATATAACTCTAAAAACCTTCAATTTAGCATTATATTTTTCCAACCGTCACTTAAACAAAAACTGATTTAAACCATTGATACTACAGGATTTAAACTGTATCTTCTATCAAATTTTCTAAAAGCACAAATCGGTTGGAAAAATTTTGAACAAACCCTTTATTTTCAACAGGTTAAAGTATATAATGAGATTAGAGAATGGCTTAACTACAGTGGTTGAACCCTAACATAGGATGTATTTAAATTTCACCTTAAATACTTTACCATCCATAGATCTACGTTGAACCCTAACATAGGATGTATTTAAATTAGTCTGTAAAACCATCAAAGGTTTTGGCATCTCTTAGTTGAACCCTAACATAGGATGTATTTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 1523-1881 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000011.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1523 31 100.0 33 ............................... TCACCTTAAATACTTTACCATCCATAGATCTAC 1587 31 100.0 36 ............................... AGTCTGTAAAACCATCAAAGGTTTTGGCATCTCTTA 1654 31 100.0 33 ............................... ATATAAATACTTTTCGAAGCCATTTAGTAACTT 1718 31 100.0 36 ............................... GGCTAAATGGAAATATAAAGACTGAGTTGAAAGTGG 1785 31 100.0 35 ............................... AATATAAATTTAAATCACATCTTTCTTATAAACTT 1851 31 87.1 0 ........T......GA.............A | ========== ====== ====== ====== =============================== ==================================== ================== 6 31 97.9 35 GTTGAACCCTAACATAGGATGTATTTAAATT # Left flank : TGTTTAACCTTAACATAAGATGTATTTAAATTTTAAGGTTTTGCTATTTGTTTTTACTTGTTTGCGTTGAACCTTAACATAAGATGTATTTAAATAGCTCCAGAGCAACCACTTTGTATCTTATCCCCGGTTGAACCTTAACATAAGATATATTTAAATGGTGTTTCGCCACCATTAAGGGCGACCGATAATAGAGTTGAATCGCTTACTCTTCTAGTACTCCTTCGACAAAGTGAGAAGGCGTTTCATTTTATAATCAACTCTCCATAACCAAAACCTCCTACTGGAATATAACTCTAAAAACCTTCAATTTAGCATTATATTTTTCCAACCGTCACTTAAACAAAAACTGATTTAAACCATTGATACTACAGGATTTAAACTGTATCTTCTATCAAATTTTCTAAAAGCACAAATCGGTTGGAAAAATTTTGAACAAACCCTTTATTTTCAACAGGTTAAAGTATATAATGAGATTAGAGAATGGCTTAACTACAGTG # Right flank : ACTTGGAAAATTATAGATTAACTGGATTATATACGTTCAATCCTAGCACAAGTGACTTAGATTTTCTTTAGAACTGCTAATATTACTAGCTTTAAGAGTAATTATAGTATTCTAAATACTATAACAACACAAATTTATATAAAAATATGTGTTTATTTTTATATAAATTTTGATATAATAATATTAAGGAAACTTCACAACCAAGCTGAGGAGTTCATAATTTTAAAAAAGTTTATAATAGTCCTATAATAAGAAAAGCTTAGTGCGTCAACACTAAGCAATCCTTAGAACATTTATTTTGTTTTAGGGCTATTGGATTTTAACTATATTATTTGCTTAGTTAAGTAGAGAGAAGCACTAATCTTTGCGGGATGGGTGCTTTTTCTCTTTGCCATCAACTTCTATGTGAATACCAAGAAACTTTATCTTGATAATTAACTTAGAAACAAAAAGATTCTGTTTTAAAACTAATTTAATAATATAAATAGTAGCAAAACTTT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCTAACATAGGATGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 2955-3245 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000011.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2955 30 100.0 36 .............................. ACTTCTTCATTTGTTGCATTTACTTGTGTTATAAGT 3021 30 100.0 35 .............................. ATTCCATTTAAGTTTTGTATAATTTTTTTCTTTCC 3086 30 100.0 35 .............................. TTATCAGGATTAATAAATTCCTCACAATATCCATT 3151 30 100.0 35 .............................. ATGTAATTATTTCTACATTTTGGTCTAATTTCCTT 3216 30 93.3 0 ................A...A......... | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 98.7 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : TAAAATATTCAAAACCCCCGCAGCCATCCATCTACGGTTAACAAAAATTATACTTGGTTATTATATCATACGTACTATTTAAAATCTATGACTTCGTAAATGGAATTTCTACCCAACAGCGAATGTTAATAAGCCTTTTCTTATATATAAGGAATTTCATTTTTTTATCAAAATTAATGAGTAATATTGAATATATTTAGTTCCGCTAAAATAATTAAAAAAGTTTAAATCTCCCCTCCTCTTCTAATTTCCTAATCCATCAAATCCTAATCGCCAAAATTCCATACTTCAATATAATTCTAAAACCTTCGATTTAGCATTATTTTTTCCAACCGTCGCTTAAACAAAACATGCTCTAAGCCATTGAAAATACAAGGTTTAAATGGTATTTTTTATTAACTTTTGAAAATCACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAAATAAGGAATGGCTTAACTACAGTG # Right flank : TGGTGTTTCGCCACCATTAAGGGCGACCGATAATAGAGTTGAATCGCTTACTCTTCTAGTACTCCTTCGACAAAGTGAGAAGGCGTTTCATTTTATAATCAACTCTCCATAACCAAAACCTCCTACTGCAATATAACTCTAAAAACCTTTAATTTAGCATTATATTTTTCCAACCGTCACTTAAACAAAAACTGATTTAAACCATTGATACTACAGGATTTAAACTGTATCTTCTATCAAATTTTCTAAAAGCACAAATCGGTTGGAAAAATTTTGAACAAACCCTTTATTTTCAACAGGTTAAAGTATATAATGAGATTAGAGAATGGCTTAACTACAGTGGTTGAACCCTAACATAGGATGTATTTAAATTTCACCTTAAATACTTTACCATCCATAGATCTACGTTGAACCCTAACATAGGATGTATTTAAATTAGTCTGTAAAACCATCAAAGGTTTTGGCATCTCTTAGTTGAACCCTAACATAGGATGTATTTA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 4 3587-3945 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000011.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 3587 31 100.0 33 ............................... TCACCTTAAATACTTTACCATCCATAGATCTAC 3651 31 100.0 36 ............................... AGTCTGTAAAACCATCAAAGGTTTTGGCATCTCTTA 3718 31 100.0 33 ............................... ATATAAATACTTTTCGAAGCCATTTAGTAACTT 3782 31 100.0 36 ............................... GGCTAAATGGAAATATAAAGACTGAGTTGAAAGTGG 3849 31 100.0 35 ............................... AATATAAATTTAAATCACATCTTTCTTATAAACTT 3915 31 87.1 0 ........T......GA.............A | ========== ====== ====== ====== =============================== ==================================== ================== 6 31 97.9 35 GTTGAACCCTAACATAGGATGTATTTAAATT # Left flank : TTGAACCTTAACATAGGATGTATTTAAATTTATCAGGATTAATAAATTCCTCACAATATCCATTGTTGAACCTTAACATAGGATGTATTTAAATATGTAATTATTTCTACATTTTGGTCTAATTTCCTTGTTGAACCTTAACATAAGATATATTTAAATGGTGTTTCGCCACCATTAAGGGCGACCGATAATAGAGTTGAATCGCTTACTCTTCTAGTACTCCTTCGACAAAGTGAGAAGGCGTTTCATTTTATAATCAACTCTCCATAACCAAAACCTCCTACTGCAATATAACTCTAAAAACCTTTAATTTAGCATTATATTTTTCCAACCGTCACTTAAACAAAAACTGATTTAAACCATTGATACTACAGGATTTAAACTGTATCTTCTATCAAATTTTCTAAAAGCACAAATCGGTTGGAAAAATTTTGAACAAACCCTTTATTTTCAACAGGTTAAAGTATATAATGAGATTAGAGAATGGCTTAACTACAGTG # Right flank : ACTTGGAAAATTATAGATTAACTGGATTATATACGTTCAATCCTAGCACAAGTGACTTAGATTTTCTTTAGAACTGCTAATATTACTAGCTTTAAGAGTAATTATAGTATTCTAAATACTATAACAACACAAATTTATATAAAAATATGTGTTTATTTTTATATAAATTTTGATATAATAATATTAAGGAAACTTCACAACCAAGCTGAGGAGTTCATAATTTTAAAAAAGTTTATAATAGTCCTATAATAAGAAAAGCTTAGTGCGTCAACACTAAGCAATCCTTAGAACATTTATTTTGTTTTAGGGCTATTGGATTTTAACTATATTATTTGCTTAGTTAAGTAGAGAGAAGCACTAATCTTTGCGGGATGGGTGCTTTTTCTCTTTGCCATCAACTTCTATGTGAATACCAAGAAACTTTATCTTGATAATTAACTTAGAAACAAAAAGATTCTGTTTTAAAACTAATTTAATAATATAAATAGTAGCAAAACTTT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCTAACATAGGATGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 5 5513-6189 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000011.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 5513 25 100.0 42 ......................... CAATATAATATTACCTGGGGGCAATTCCTTCATGACAGTTGA 5580 25 100.0 41 ......................... TAGCGTGTCTAAGTCTCTTAGGCTCCTTTGTCTGTTGTTGA 5646 25 100.0 41 ......................... AGTAAACTAGGTATGTTTGTTGTATCTTTGTATAGAGTTGA 5712 25 100.0 40 ......................... TTTATTTCTAAGCAAGCTTGGTATTCTAAGTAAGCGTTGA 5777 25 100.0 39 ......................... ATTTATTATTTCCTATAAGGACTTAGACGGCAAAGTTGA 5841 25 100.0 42 ......................... ATAGGATTAATTTTAACAAGTGTACAAACCTAGATTAGTTGA 5908 25 100.0 39 ......................... TTATATTTTGTTAATAAAACGACTCCAATTATAAGTTGA 5972 25 100.0 40 ......................... GGTGTTATTACGCTTATGCCTGCAAACTGATTCATGTTTA 6037 25 96.0 39 ...........A............. TTTAAGGTTTTGCTATTTGTTTTTACTTGTTTGCGTTGA 6101 25 96.0 39 ...........A............. AGCTCCAGAGCAACCACTTTGTATCTTATCCCCGGTTGA 6165 25 92.0 0 ...........A...A......... | ========== ====== ====== ====== ========================= ========================================== ================== 11 25 98.5 40 ACCTTAACATAGGATGTATTTAAAT # Left flank : ACAGTGGTTGAACCTTAACATAGGATGTATTTAAATATGGGATTAAATTTAATATTCTTGAAACTCATTTTTAGTTGAACCTTAACATAGGATGTATTTAAATTTAAGTAACTCTGCTAATTGTTGAATAACGTCCTGTTGAACCTTAACATGAGATGTATTTAAGCAGAGAACCAAGATTTAAAATCTTGTGTGAATCGCTTACTCTTCCAGTACTCCTTCGACAAAGAGAGAAGGAGTTTCATTTTCTAATCAACTCTCAATAACCAAAACCTCCTACTGGAATATAACTCTAAAAACCTTCAATCTAACATTATTTTTTCCAACCTCCCCTTAAACAAAAACTGCTTTAAACCATTGAAATGTCAAGGTTTAAAGGGTGTTTTTTATCAACTTTTGAAAAAGTACAAATCGATTGGAAAAACTTCAGAGAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAAATAAGGAATGGCTTAACTACAGTGGTTGA # Right flank : TGGTGTTTCGCCACCATTAAGGGCGACCGATAATAGAGTTGAATCGCTTACTCTTCTAGTACTCCTTCGACAAAGTGAGAAGGCGTTTCATTTTATAATCAACTCTCCATAACCAAAACCTCCTACTGGAATATAACTCTAAAAACCTTCAATTTAGCATTATTTTTTCCAACCGTCGCTTAAACAAAACATGCTCTAAGCCATTGAAAATACAAGGTTTAAATGGTATTTTTTATTAACTTTTGAAAATCACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAAATAAGGAATGGCTTAACTACAGTGGTTGAACCTTAACATAGGATGTATTTAAATTTTAACTCATTTAAGGTATTTATATCATCCTCTAATGTTGAACCTTAACATAGGATGTATTTAAATTTTAAAGGTTTAGGATGGTTACTTTTTTTACCTAACCAGTTGAACCTTAACATAGGATGTATTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 6 6529-7214 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000011.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 6529 30 100.0 36 .............................. TTTAACTCATTTAAGGTATTTATATCATCCTCTAAT 6595 30 100.0 38 .............................. TTTAAAGGTTTAGGATGGTTACTTTTTTTACCTAACCA 6663 30 100.0 35 .............................. TCACCTGAAAGATTACCATCCCCATCAATATATAC 6728 30 100.0 37 .............................. TAGCTATATTGTCTAAATCCGGTTTCTTGGTTGGTCT 6795 30 100.0 35 .............................. GTTCCATAGATATTACCCTCCCAATCTGTATCCCT 6860 30 100.0 34 .............................. GCTTTACAATTTAGAAAAGAAAGTTTGTAAAATG 6924 30 100.0 36 .............................. ACTTCTTCATTTGTTGCATTTACTTGTGTTATAAGT 6990 30 100.0 35 .............................. ATTCCATTTAAGTTTTGTATAATTTTTTTCTTTCC 7055 30 100.0 35 .............................. TTATCAGGATTAATAAATTCCTCACAATATCCATT 7120 30 100.0 35 .............................. ATGTAATTATTTCTACATTTTGGTCTAATTTCCTT 7185 30 93.3 0 ................A...A......... | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 99.4 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : CATGTTTAACCTTAACATAAGATGTATTTAAATTTTAAGGTTTTGCTATTTGTTTTTACTTGTTTGCGTTGAACCTTAACATAAGATGTATTTAAATAGCTCCAGAGCAACCACTTTGTATCTTATCCCCGGTTGAACCTTAACATAAGATATATTTAAATGGTGTTTCGCCACCATTAAGGGCGACCGATAATAGAGTTGAATCGCTTACTCTTCTAGTACTCCTTCGACAAAGTGAGAAGGCGTTTCATTTTATAATCAACTCTCCATAACCAAAACCTCCTACTGGAATATAACTCTAAAAACCTTCAATTTAGCATTATTTTTTCCAACCGTCGCTTAAACAAAACATGCTCTAAGCCATTGAAAATACAAGGTTTAAATGGTATTTTTTATTAACTTTTGAAAATCACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAAATAAGGAATGGCTTAACTACAGTG # Right flank : TGGTGTTTCGCCACCATTAAGGGCGACCGATAATAGAGTTGAATCGCTTACTCTTCTAGTACTCCTTCGACAAAGTGAGAAGGCGTTTCATTTTATAATCAACTCTCCATAACCAAAACCTCCTACTGGAATATAACTCTAAAAACCTTCAATTTAGCATTATTTTTTCCAACCGTCGCTTAAACAAAACATGCTCTAAGCCATTGAAAATACAAGGTTTAAATGGTGTTTTTCATTAACTTTTGAAAATCACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAAATAAGGAATGGCTTAACTACAGTGGTTGAACCTTAACATAGGATGTATTTAAATTAATATAATATTACCTGGGGGCAATTCCTTCATGACAGTTGAACCTTAACATAGGATGTATTTAAATTAGCGTGTCTAAGTCTCTTAGGCTCCTTTGTCTGTTGTTGAACCTTAACATAGGATGTATTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 7 7554-8235 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000011.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 7554 30 100.0 37 .............................. TAATATAATATTACCTGGGGGCAATTCCTTCATGACA 7621 30 100.0 36 .............................. TAGCGTGTCTAAGTCTCTTAGGCTCCTTTGTCTGTT 7687 30 100.0 36 .............................. AGTAAACTAGGTATGTTTGTTGTATCTTTGTATAGA 7753 30 100.0 35 .............................. TTTATTTCTAAGCAAGCTTGGTATTCTAAGTAAGC 7818 30 100.0 34 .............................. ATTTATTATTTCCTATAAGGACTTAGACGGCAAA 7882 30 100.0 37 .............................. ATAGGATTAATTTTAACAAGTGTACAAACCTAGATTA 7949 30 100.0 34 .............................. TTATATTTTGTTAATAAAACGACTCCAATTATAA 8013 30 100.0 35 .............................. GGTGTTATTACGCTTATGCCTGCAAACTGATTCAT 8078 30 93.3 34 ...T............A............. TTTAAGGTTTTGCTATTTGTTTTTACTTGTTTGC 8142 30 96.7 34 ................A............. AGCTCCAGAGCAACCACTTTGTATCTTATCCCCG 8206 30 93.3 0 ................A...A......... | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 98.5 35 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : CGTTGAACCTTAACATAGGATGTATTTAAATTTATCAGGATTAATAAATTCCTCACAATATCCATTGTTGAACCTTAACATAGGATGTATTTAAATATGTAATTATTTCTACATTTTGGTCTAATTTCCTTGTTGAACCTTAACATAAGATATATTTAAATGGTGTTTCGCCACCATTAAGGGCGACCGATAATAGAGTTGAATCGCTTACTCTTCTAGTACTCCTTCGACAAAGTGAGAAGGCGTTTCATTTTATAATCAACTCTCCATAACCAAAACCTCCTACTGGAATATAACTCTAAAAACCTTCAATTTAGCATTATTTTTTCCAACCGTCGCTTAAACAAAACATGCTCTAAGCCATTGAAAATACAAGGTTTAAATGGTGTTTTTCATTAACTTTTGAAAATCACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAAATAAGGAATGGCTTAACTACAGTG # Right flank : TGGTGTTTCGCCACCATTAAGGGCGACCGATAATAGAGTTGAATCGCTTACTCTTCTAGTACTCCTTCGACAAAGTGAGAAGGCGTTTCATTTTATAATCAACTCTCCATAACCAAAACCTCCTACTGCAATATAACTCTAAAAACCTTTAATTTAGCATTATATTTTTCCAACCGTCACTTAAACAAAAACTGATTTAAACCATTGATACTACAGGATTTAAACTGTATCTTCTATCAAATTTTCTAAAAGCACAAATCGGTTGGAAAAATTTTGAACAAACCCTTTATTTTCAACAGGTTAAAGTATATAATGAGATTAGAGAATGGCTTAACTACAGTGGTTGAACCCTAACATAGGATGTATTTAAATTTCACCTTAAATACTTTACCATCCATAGATCTACGTTGAACCCTAACATAGGATGTATTTAAATTAGTCTGTAAAACCATCAAAGGTTTTGGCATCTCTTAGTTGAACCCTAACATAGGATGTATTTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 8 8577-8935 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000011.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 8577 31 100.0 33 ............................... TCACCTTAAATACTTTACCATCCATAGATCTAC 8641 31 100.0 36 ............................... AGTCTGTAAAACCATCAAAGGTTTTGGCATCTCTTA 8708 31 100.0 33 ............................... ATATAAATACTTTTCGAAGCCATTTAGTAACTT 8772 31 100.0 36 ............................... GGCTAAATGGAAATATAAAGACTGAGTTGAAAGTGG 8839 31 100.0 35 ............................... AATATAAATTTAAATCACATCTTTCTTATAAACTT 8905 31 87.1 0 ........T......GA.............A | ========== ====== ====== ====== =============================== ==================================== ================== 6 31 97.9 35 GTTGAACCCTAACATAGGATGTATTTAAATT # Left flank : TGTTTAACCTTAACATAAGATGTATTTAAATTTTAAGGTTTTGCTATTTGTTTTTACTTGTTTGCGTTGAACCTTAACATAAGATGTATTTAAATAGCTCCAGAGCAACCACTTTGTATCTTATCCCCGGTTGAACCTTAACATAAGATATATTTAAATGGTGTTTCGCCACCATTAAGGGCGACCGATAATAGAGTTGAATCGCTTACTCTTCTAGTACTCCTTCGACAAAGTGAGAAGGCGTTTCATTTTATAATCAACTCTCCATAACCAAAACCTCCTACTGCAATATAACTCTAAAAACCTTTAATTTAGCATTATATTTTTCCAACCGTCACTTAAACAAAAACTGATTTAAACCATTGATACTACAGGATTTAAACTGTATCTTCTATCAAATTTTCTAAAAGCACAAATCGGTTGGAAAAATTTTGAACAAACCCTTTATTTTCAACAGGTTAAAGTATATAATGAGATTAGAGAATGGCTTAACTACAGTG # Right flank : ACTTGGAAAATTATAGATTAACTGGATTATATACGTTCAATCCTAGCACAAGTGACTTAGATTTTCTTTAGAACTGCTAATATTACTAGCTTTAAGAGTAATTATAGTATTCTAAATACTATAACAACACAAATTTATATAAAAATATGTGTTTATTTTTATATAAATTTTGATATAATAATATTAAGGAAACTTCACAACCAAGCTGAGGAGTTCATAATTTTAAAAAAGTTTATAATAGTCCTATAATAAGAAAAGCTTAGTGCGTCAACACTAAGCAATCCTTAGAACATTTATTTTGTTTTAGGGCTATTGGATTTTAACTATATTATTTGCTTAGTTAAGTAGAGAGAAGCACTAATCTTTGCGGGATGGGTGCTTTTTCTCTTTGCCATCAACTTCTATGTGAATACCAAGAAACTTTATCTTGATAATTAACTTAGAAACAAAAAGATTCTGTTTTAAAACTAATTTAATAATATAAATAGTAGCAAAACTTT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCTAACATAGGATGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 9 10009-10765 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000011.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 10009 30 100.0 38 .............................. TTTAATGTGTTTGTTTTATTGTGTTTTGTATGTCTGTT 10077 30 100.0 34 .............................. AAGAAACCGCCTATGCTATCCTTTAGCTTTTGGT 10141 30 100.0 37 .............................. GCTATAAAGCCATTATTTTTAATTAATTTATTATTAG 10208 30 100.0 37 .............................. TCATTTCAGCATTAGATTTTTCTAGGGACTCTACTCT 10275 30 100.0 35 .............................. TAGCAACCGCTACAATTACACCGTATAATACCTTT 10340 30 100.0 37 .............................. ATTAGTTATTATTACTTTTTAATTATTTATCCAATAA 10407 30 100.0 34 .............................. CTTAAATCAATTCCTTTCATTTCAGATTGCGACA 10471 30 100.0 34 .............................. TCTCTTAACTTATTCATGTATTTAATCCTATCAG 10535 30 100.0 37 .............................. GCAGTTAATTGTCTATTTTCATTAGCCGCTCTTTCCA 10602 30 100.0 37 .............................. TCTGCTTTATGGAAGTACTGTAACCTTCCCCATTTAG 10669 30 100.0 37 .............................. TCTGTCATAGACTCGACCTGTCCATTTCTCCACTCAT 10736 30 90.0 0 ........C...................GC | ========== ====== ====== ====== ============================== ====================================== ================== 12 30 99.2 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : TAAAATATTCAAAACCCCCGCAGCCATCCATCTACGGTTAACAAAAATTATACTTGGTTATTATATCATACGTACTATTTAAAATCTATGACTTCGTAAATGGAATTTCTACCCAACAGCGAATGTTAATAAGCCTTTTCTTATATATAAGGAATTTCATTTTTTTATCAAAATTAATGAGTAATATTGAATATATTTAGTTCCGCTAAAATAATTAAAAAAGTTTAAATCTCCCCTCCTCTTCTAATTTCCTAATCCATCAAATCCTAATCGCCAAAATTCCATACTTCAATATAATTCTAAAACCTTCGATTTAGCATTATTTTTTCCAACCGTCGCTTAAACAAAACATGCTCTAAGCCATTGAAAATACAAGGTTTAAATGGTATTTTTTATTAACTTTTGAAAATCACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAAATAAGGAATGGCTTAACTACAGTG # Right flank : CAGAGAACCAAGATTTAAAATCTTGTGTGAATCGCTTACTCTTCGAGTACTCCTTCGACAAAGAGAGAAGGAGTTCCATTTTCTAATCAACTCTCAATAACCAAAACCTCCTACTGGAATATAACTCTAAAAACCTTCAATTTAATATTATTTTTTCCAACCTCCCCTTAAACAAAAACTGCTTTAAACTATTGAAATGCCAAGGTTTAAAGGGTGTTTTTTATCAACTTTTGAAAAAGTACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAATTAGAGAATGGCTTAACTGCAGTGGTTGAACCCTAACATAGGATGTATTTAAATTAAATTTTTCCTTATTACTCATTTTAGCCACCTCTATGTTGAACCCTAACATAGGATGTATTTAAATATTTAATTATATTATATTCATTTATGGCACTATTAAGTTGAACCCTAACATAGGATGTATTTAAATTAAAGCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 10 11094-11913 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000011.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 11094 30 100.0 37 .............................. TAAATTTTTCCTTATTACTCATTTTAGCCACCTCTAT 11161 30 100.0 36 .............................. ATTTAATTATATTATATTCATTTATGGCACTATTAA 11227 30 100.0 35 .............................. TAAAGCGAAGTTAGTCTTCATCTTCGCTATCCCAA 11292 30 100.0 38 .............................. CCCGGACCAGGTACATAGATATAAATTATATAAAAAGG 11360 30 100.0 36 .............................. AATAGCTAGTTGGGGAGGTGGTTATGCTGCACATTC 11426 30 100.0 37 .............................. TTAAATCTTATATATCCTTTATATGTTCCTGCTTCCC 11493 30 100.0 34 .............................. CTGGATTCTTAGGAATGTATTCCTACTCATGGAG 11557 30 100.0 37 .............................. AATAGATTATTATATTTATCTTTGGAAGCTCCATAGG 11624 30 100.0 36 .............................. TCAGTATAAACTTGACACTCTACTTTAGTAGTTTCA 11690 30 100.0 33 .............................. TATCCACAGGGATATAAGTATAATTATAATTAT 11753 30 100.0 37 .............................. AATGCTCTTTTTAGCCAACTATGAACTGCATCAACCT 11820 30 100.0 34 .............................. AAACATATTGAACGGCCACCTTTTAGTGTTCCTT 11884 30 90.0 0 ........T...................GC | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.2 36 GTTGAACCCTAACATAGGATGTATTTAAAT # Left flank : TCTTTCCAGTTGAACCTTAACATAGGATGTATTTAAATTCTGCTTTATGGAAGTACTGTAACCTTCCCCATTTAGGTTGAACCTTAACATAGGATGTATTTAAATTCTGTCATAGACTCGACCTGTCCATTTCTCCACTCATGTTGAACCCTAACATAGGATGTATTTAAGCAGAGAACCAAGATTTAAAATCTTGTGTGAATCGCTTACTCTTCGAGTACTCCTTCGACAAAGAGAGAAGGAGTTCCATTTTCTAATCAACTCTCAATAACCAAAACCTCCTACTGGAATATAACTCTAAAAACCTTCAATTTAATATTATTTTTTCCAACCTCCCCTTAAACAAAAACTGCTTTAAACTATTGAAATGCCAAGGTTTAAAGGGTGTTTTTTATCAACTTTTGAAAAAGTACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAATTAGAGAATGGCTTAACTGCAGTG # Right flank : CAGAGAACCCAAATCTATGATTTGGTGTGAATCGCTTACTCTTTGAGTACTCCTTCCACAAAGAGAGGAGGAGTTTAACTATCCTATCAAAATCAATGTGAATCTATAGTTGAACCTTAAAAATCTAGAAAAAGTACCTCTTAAAGCTTTTAATTTTAAAAGCTTTAAGAGGTACTTATATTTATAACAAAATTTAAGCTATATAAAATAGTTTTATTTTTGTAGAGAAACTGTGAAATAAATGTAAAATTTGTAGAAATAATTATAATTTTAGGAAAATCATTGATTTCTTACAATAATATGTATTATAATCTAGTCATAGCATGTGGATGCATTTAAATGTGGTTAATATTAAAATTTATGTATTTATGAACCGTAACATTTAATGTTGTAGAATAGTTAATACCAGTAGTAAATATTAAAATTTATAATAATGGAGGTGAATTAATGAAAGTTTATGAATTAACATTAAAAATATTTCTTATTAAAGACTTACCGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 11 13283-14102 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000011.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 13283 30 100.0 37 .............................. TAAATTTTTCCTTATTACTCATTTTAGCCACCTCTAT 13350 30 100.0 36 .............................. ATTTAATTATATTATATTCATTTATGGCACTATTAA 13416 30 100.0 35 .............................. TAAAGCGAAGTTAGTCTTCATCTTCGCTATCCCAA 13481 30 100.0 38 .............................. CCCGGACCAGGTACATAGATATAAATTATATAAAAAGG 13549 30 100.0 36 .............................. AATAGCTAGTTGGGGAGGTGGTTATGCTGCACATTC 13615 30 100.0 37 .............................. TTAAATCTTATATATCCTTTATATGTTCCTGCTTCCC 13682 30 100.0 34 .............................. CTGGATTCTTAGGAATGTATTCCTACTCATGGAG 13746 30 100.0 37 .............................. AATAGATTATTATATTTATCTTTGGAAGCTCCATAGG 13813 30 100.0 36 .............................. TCAGTATAAACTTGACACTCTACTTTAGTAGTTTCA 13879 30 100.0 33 .............................. TATCCACAGGGATATAAGTATAATTATAATTAT 13942 30 100.0 37 .............................. AATGCTCTTTTTAGCCAACTATGAACTGCATCAACCT 14009 30 100.0 34 .............................. AAACATATTGAACGGCCACCTTTTAGTGTTCCTT 14073 30 90.0 0 ........T...................GC | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.2 36 GTTGAACCCTAACATAGGATGTATTTAAAT # Left flank : AAAAGAATAAAAGAAAATCTTATAAAGAAATATAATCAATTCTTTGATGAAAAAATTGATGAAAATTTCCCACTATATAATTTTATAAGGTTTGATAACAAAAAACCTATTGGAATAAAGTACAAAAATATCACCTTGTTAGGTGACAAAATCACATTAAATATAGCTGATGATGAAATATCACAGAACATTGCGTATTTAGCATTAGGTGCGGGCCTTGGTGAAATGTGTCCAAGGGGTATGGGTTTCTTGAATTACAAATGGATGTAAGGGGGTGAGTGAATGCTTCAAGATGCAATTAAAACTTTCAAAAATATATATGATAAAAATGGAGAAAATTTTATAACTAATTCCTATATCCCCTCTGATGGAGATTATGTAATATTAGCTCCACATGAAGATACATTTAAGGAATTAGATGTAGTGAAGATAAAGCAAAATAAAAAGACAAAAGAAATTGATAGNATATAATGAAATTAGAGAATGGCTTAACTGCAGTG # Right flank : CAGAGAACCCAAATCTATGATTTGGTGTGAATCGCTTACTCTTTGAGTACTCCTTCCACAAAGAGAGGAGGAGTTTAACTATCCTATCAAAATCAATGTGAATCTATAGTTGAACCTTAAAAATCTAGAAAAAGTACCTCTTAAAGCTTTTAATTTTAAAAGCTTTAAGAGGTACTTATATTTATAACAAAATTTAAGCTATATAAAATAGTTTTATTTTTGTAGAGAAACTGTGAAATAAATGTAAAATTTGTAGAAATAATTATAATTTTAGGAAAATCATTGATTTCTTACAATAATATGTATTATAATCTAGTCATAGCATGTGGATGCATTTAAATGTGGTTAATATTAAAATTTATGTATTTATGAACCGTAACATTTAATGTTGTAGAATAGTTAATACCAGTAGTAAATATTAAAATTTATAATAATGGAGGTGAATTAATGAAAGTTTATGAATTAACATTAAAAATATTTCTTATTAAAGACTTACCGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 12 23836-24195 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000011.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 23836 31 100.0 34 ............................... ACCCTATGCCCTTAAGGTATTTATTCATTGTGGA 23901 31 100.0 33 ............................... CATTTTCACGAAATCGATACCCCATTTGGAGTA 23965 31 96.8 36 ..............................A TGAGTTAGTGTCTATAAGAGCGTCTATACCTTCCTC 24032 31 100.0 36 ............................... TAAAAGGACAAAATACTTTACTAAATACTTCTCCAA 24099 31 100.0 35 ............................... GATTTAATGGATCATAACTATATACGAATTCCATT 24165 31 90.3 0 ............................GCA | ========== ====== ====== ====== =============================== ==================================== ================== 6 31 97.9 35 GTTGAACCCTAACATAGGATGTATTTAAATT # Left flank : ATAAATAAAGAAGAAGATTTTATATGTATTATTAAACTTCTAAATGAAAAAGTGTATGGTGAAGAAATACTAGGAATTCAACAAAATAATACAGGTGAAGATCTCATAATATAATTTTTCCAACCTTCCTGTAACCAAAACACCCCTTAGACCATTAAAAACACATGGTTAAGGGGTGTTTTTCATTAACCTTTGAAAAAACACAAATTGATTAAAAAAGTCTCACTCTCCCCTCCCCTTCTAGCGCCCTAATCTAATCAACTCTTGATAACCAAAACCTGCTACTGAAACATCATTCCAGAAACCTTCAATCTAACATTATTTTTTCCAACCTCCCCTTAAACAAAAACCGCTTTAAAATATTGATGCTACAGGATTTAAACTGTATCTTCTATGAAATTTTCTAAAAGCACAAATCGGTTGGAAAAACTTTAAACAAACCCTTTATTTTCAACAGATTAAAGGCTATAATGAAAATAAAGAATGGCTTAATTGCAGTG # Right flank : AGAGAACCAAGATTTAAAATCTTGTGTGAATCGCTTACTCTTCGAGTACTCCTTCGAAAAAGTGAGAAGGAGTTTCATTTTCTTATCAAAATCAATGCAAATCTACGTCAGTATTTTCGATATAAAAAATTAATTAAAGAATAAAAGAAATGTAAAGTCAGAGTTTCTATATAAAAAAATTTATAAGTATTAAAATAAACATATATGTTTATTTTTTATAATAATTTGATATAATATAAGTAAGACTCTAAATCACTGATTTAGTAAATCGAACTTACACTGTAGGTGTAAATAAGAAAAGCTTAGTGCTGATGACACTAAGCAATCCTTAGAACATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTAAAGCACTAATCTTTGCGGGATGGGTGCTTTTTCTCTTTGCCATCAACTTCTACATGAACACCAAGAAACCTTATCTTGATAATTAACTTAGAAACAAAAAGATTATGTTT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCTAACATAGGATGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 13 25303-26255 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000011.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 25303 30 100.0 36 .............................. GTTAAAGGCTCTAGTCCTCATTTCCCTTATGTAGCT 25369 30 100.0 36 .............................. TATTTTAAAGGAGGGTTTAACGATTGGCAATAATAG 25435 30 100.0 38 .............................. TAGCTATAACTGTCTGCATCATTTCCACCATTGACCCT 25503 30 100.0 34 .............................. TAAGCTAACATATTAATAGTATTTTCCACTTTTA 25567 30 100.0 36 .............................. AAGGATGGGTGGAATGTGTAATATAATTGCAATCCC 25633 30 100.0 36 .............................. AAGGATGGGTGGAATGTGTAATATAATTGCAATCCC 25699 30 100.0 36 .............................. GCATTTCTACGTTTTAAGAATACTTTATTTAGTATT 25765 30 100.0 37 .............................. AAATAAAAAACGTCTTACTTATATACATTTAAGTAAA 25832 30 100.0 35 .............................. GAAGAAAAGGAAGATCTTCTTGATAAGATAATAAA 25897 30 100.0 36 .............................. ATATTAAATTTTACCTCATTTAATATTGAATTGAGT 25963 30 100.0 37 .............................. TATCATATAGCGTTGCCGATACATTTTTGTCCATATC 26030 30 100.0 34 .............................. CAGCTAAGGCTTCTGCTATTTTTCTAACTACAAA 26094 30 100.0 36 .............................. AGGAGAATATTTAACATTTCTATCCCGCAACATATA 26160 30 100.0 36 .............................. GTTTCTTGATTTATAAAACTCTTGGCAAATTCTTTT 26226 30 90.0 0 ........T...................GC | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 99.3 36 GTTGAACCCTAACATAGGATGTATTTAAAT # Left flank : AGGATAAAACGTTCAAAACCCCCGTAGCCATCCATCTACGGTTAACAAATTATACTTGAATATTATACCATAAGTGATATTTAGAATCTATGATTTTGTCATGGAGCTTTTATCCAATAACAAATGTAAATAATCCTTTTTTTAATATATAAGGAGTTTCATTTTCTTATCAAAATCAATATGTAATATTGGATATATTTAGCCCTGCCAAAATAATTGAAAAAGTCTCACTCTCCCCTTCTAGCTTCCTAATTTCATCAACTCCTAGTGGCCAAAATCCCATACTTCAATATAATTCTTAAACCTTAAATTCAGCATTATATTTTTCCAACCGCCGATTAAACAAAACACTCCCTAAACCATTGAAAATATAAGGTTTAAAGGGTATTTTTGATCAACCTTTTAGAAAACACAAATCGGTTGGAAAAATTTTAACCAAACCCTTTATTTTCAACAGGTTAAAGGCTATAATGAAAATAAAGAATGGCTTAATTGCAGTG # Right flank : CAGAGAACCCAAATCTGTGACTTGGCGTGAATCGCTTACTCTTCGAGTACTCCTTCGATAAAGAGAGAAGGAGTTTCATTTTTTATCAAAATTAATGAATCTATTTAGCTTCTGATAAATTAATTTGAAAAAATCTCAATCTCCCCTCCCCTTCTAACTTCGTAATTTTTCCAACCGCTGATTAAACAAAACATCCTCTAAACCATTGAAATCTCAAAGTTTAAGGTGTGTTTTTCATAAACTTTTTAAAAACCACAAATCGATTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGCTATAATGAAAATAAGGAATGGCTTAACTACTGTGGTTGAACCTCAACATGAGATGTATTTAAACACGGCTGTTTCTCTACTAGCTCCATCTTGGGCGTGTTGAACCTCAACATGAGATGTATTTAAACGGATCCCTTGTTAGCCTCCCGATTAAAATAATCTTAGTTGAACCTCAACATGAGATGTATTTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 14 26598-27677 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000011.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================== ================== 26598 29 100.0 35 ............................. CACGGCTGTTTCTCTACTAGCTCCATCTTGGGCGT 26662 29 100.0 37 ............................. CGGATCCCTTGTTAGCCTCCCGATTAAAATAATCTTA 26728 29 100.0 38 ............................. CATGATGGGGTGTTGTGTAATGGAAAACTTAATCATAC 26795 29 100.0 38 ............................. CCTTTCTTAGCTTTTTAAGATGTTTACATATTAAAGGC 26862 29 100.0 38 ............................. CTTTTTTTACCCTTCTCTCCATATACAAAAATCCATTA 26929 29 100.0 37 ............................. CTAACTTCCCACAATGTCCTCACCATTAATATGGATA 26995 29 100.0 37 ............................. CATTAACACATCACATAGATTTAATAATTCATACTTT 27061 29 96.6 38 .........T................... CCTTGGAGCTTTTACTTCGCTATTTCTTCTTTCTTCTA 27128 29 96.6 38 .........T................... TAACGTTTGTATTTCTTTACATTCAGCTAGTTTCTCTT 27195 29 89.7 38 .........T.....AG............ TTCTTTACATGGGTACTCGAACTGTTTCAGTTCCAGAA 27262 29 86.2 36 .........T..T..AG............ TCATTTTTGAAAATACGTTAAGGATAAGAAAAAGAA 27327 29 86.2 100 ........CT.....A............G CAGAGAACCAAGATTAAAAATCTTGTGTGAATCGCTTACTCCTTCCATGAAAAGAGAAGGAGTTTCATTTTCTTATTAAAAATCTATTTTAGGTAAAGCA 27456 29 89.7 36 .........T.....AG............ TCTTACTATGTTTCCCCATTCTGCATATTCACCATC 27521 29 89.7 99 .........T.....A............G CATAGAACCAAGATTTAAAATCTTGTGTGAATCGCTTACTCCTTCGACAAAGTGAGAAGGAGTTTTATTTTTTCATCAAAATCAATTGATAAATATTTT 27649 29 89.7 0 A..A.....T................... | ========== ====== ====== ====== ============================= ==================================================================================================== ================== 15 29 95.0 46 GTTGAACCTCAACATGAGATGTATTTAAA # Left flank : AACCCTAACATAGGATGTATTTAAATAGGAGAATATTTAACATTTCTATCCCGCAACATATAGTTGAACCCTAACATAGGATGTATTTAAATGTTTCTTGATTTATAAAACTCTTGGCAAATTCTTTTGTTGAACCTTAACATAGGATGTATTTAAGCAGAGAACCCAAATCTGTGACTTGGCGTGAATCGCTTACTCTTCGAGTACTCCTTCGATAAAGAGAGAAGGAGTTTCATTTTTTATCAAAATTAATGAATCTATTTAGCTTCTGATAAATTAATTTGAAAAAATCTCAATCTCCCCTCCCCTTCTAACTTCGTAATTTTTCCAACCGCTGATTAAACAAAACATCCTCTAAACCATTGAAATCTCAAAGTTTAAGGTGTGTTTTTCATAAACTTTTTAAAAACCACAAATCGATTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGCTATAATGAAAATAAGGAATGGCTTAACTACTGTG # Right flank : ATGGCTTCCATCCACTCCACCAGCGTTTTATTTTGTCATTGAACCTTACCCCTTACCAACTTTAGTAGACACGATAAACTCGTATTATACTAAAAGTGAAGTGACTGATTTAAATGAACAAAAAGTATAGTGCAGAATTTAAACTAGAAGCTGTAATCTCAGTCCAGAAGACGAAAAACTTAGAAAACTAGAAAAGGAAAATGGAGAACTTAAAGAAGAATTTGAAATATAAAAAAAGCGTTAGCTTTCTTCGCCAAGAACCTAAAGTAAAGATATGTGAATTTATCAAGGCTACCCGCGACAAATACCGTATAGCTAAGCTATGTGAAGTTCTTAATATTGCTCTCAACACTACCGAATTCTTACATAAGCATAATTTTGCCTACAGTATGTCCCGTAAAAATAATTGTTGGGTCAATGCTCCCATAGAATGGTTTTGGAGTAAACTTGGATGTGAGTTGCTCCATGTAAAACACTTTAAAACATGTGCTGAAGCTAGA # Questionable array : NO Score: 4.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.78, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTCAACATGAGATGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 175574-176323 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000009.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 175574 30 100.0 36 .............................. TATGATCCTAATTCAAAATCCATATGCAACATAATA 175640 30 100.0 36 .............................. GGACCACGTCCTCCAGTTCTATATTCAAATCCCTCA 175706 30 100.0 36 .............................. CTCTTTTATAAGCTTGTAATATTAAAATAATACAAT 175772 30 100.0 34 .............................. AAAGTATCGTCACCATGGTAACCGTTTGGTAGGT 175836 30 100.0 35 .............................. TCTAAAATGTAATTACTCTTATTCTGGTATTCTTT 175901 30 100.0 36 .............................. AGCAGAAGGCACTATATATAAATTTGTATATATAAA 175967 30 100.0 35 .............................. AGACCTGCTACTGCAACTCCTATTTGAAAGACGTA 176032 30 100.0 36 .............................. ATTACAATATTGTGAGGTGTGATGATGGGGAAATGT 176098 30 96.7 35 ........C..................... TAGCCTTCTAGCCATTTTCTAATGTAGATTTCCTC 176163 30 96.7 36 ........C..................... TTGCTGATGTTATGATTTTCTGTCGAAGACAGTAAA 176229 30 93.3 35 ...............GA............. CTAGTAAATGTAAAAAAGAAGGTAATTCCTAGCCT 176294 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ==================================== ================== 12 30 98.3 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AACAAAATATACTCTAAAGCATTGAAAATACAAGCTTTAAGGGTGTTTTTTATAAACTTTTCAAAAACACAAATCGGTTGGAAAAATTTCAGAGAAACCCTTTATTTTCAGTAGGTTAAAGGCTATAATGAAAATAAGGAATGGCTTAATTGCAGTGGTTGAACCTTAAGCAGAGAACCCAAATCTGCTATTTGGTGTGAATCGCTTACTCTTCGAGTACTCCTTCGATGAAAAGAGAAGGAGTTTCATTTTCTAATCAACTCTCGATACCCAAAACCTCCTACTTGAATATAACTCTAAAAACCTTCAATTTAGCATTATATTTTTCCAACCTCCAATTAAACAATACACCCTCTAAGCCATTGAAATACCAAGGCTTAAAGGGTGTTTTTCATAAACTTTTGAAAAAACGTAAATCAGTTGGAAAAATTTCGAAGAAACCCTTTATTTTCAGTAGGTTAAAGGCTATAATGAAAATAAGGAATGGCTTAACTGCAGTG # Right flank : CAGGGAACCCAAATCTATGATTTGCTGTGAATCGCTTACTCTTCGAGTACTCCTTCCATAAAAAGAGAAGGAGTTTCATTTTCTTATCGAAATCAATGGTAATATTGGATATATTTAGTTCCTATCAGAGTAATCCAAAAATCTTAATCTCCCCTCCCCCTCTAACTTTCTAATCTAATCAACTCTCAATAACCAAAACCTCCTACTGGAATATAACTCTAAAAACCTTCAATCTAACATTATTTTTTCCAACCGCTGATTAAACAAAACATCCTCTAAGTCATTGAAAATACAAGGTTTAAAGGGTATTTTTTCTTAACTTTTAAAAAAACACAAATCGGTTGGAAAAATTTCAGAGAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAAATAAGGAATGGCTTAACTGCAGTGGTTGAACCTTAACATAGGATGTATTTAAATTGTTTTGAAGGCGTCCAACCTGCTTGTTATAGCAGGGGTTGAACCTTAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 176744-177636 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000009.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 176744 30 100.0 37 .............................. TGTTTTGAAGGCGTCCAACCTGCTTGTTATAGCAGGG 176811 30 100.0 38 .............................. TCTAAAATAACATATAAAGCTATATGCTATATGCTAAA 176879 30 100.0 36 .............................. GCTTTTTGAATACGCCATGGAGCATGATATAGTGAC 176945 30 100.0 36 .............................. CCCGTAATAGTGGGAACATCAATTTCATCTAATAAT 177011 30 100.0 36 .............................. AAACCTATTGCTAATAATAGGGCTTTTAGGTTAAAT 177077 30 100.0 37 .............................. AAGCACTGTTAATTAGGTTAATTTCTCTTATGTATGG 177144 30 100.0 35 .............................. AGCTGTCAAGTAAATTCTTTTAGGTTAACGTCTTC 177209 30 100.0 34 .............................. GACAAGATAAAATTAATAAATTCTATCCTATCTT 177273 30 100.0 37 .............................. AAATATAGCCAATACCTTTGTAGCTTATGGCTACCAC 177340 30 100.0 36 .............................. GCCTACAAAGAAATAGATACCGTTGTAGACGAAAAT 177406 30 100.0 37 .............................. CTAACTGTATCGATTGAACTATAAGTTGAATATATAG 177473 30 100.0 37 .............................. CTAACTGTATCGATTGAACTATAAGTTGAATATATAG 177540 30 100.0 37 .............................. GAGGATTTAAAAGGAGTGATTATGTTTAATAATTACA 177607 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 100.0 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : GAGATGTATTTAAATCTAGTAAATGTAAAAAAGAAGGTAATTCCTAGCCTGTTGAACCTTAACATAGGATGTATTTAAGCAGGGAACCCAAATCTATGATTTGCTGTGAATCGCTTACTCTTCGAGTACTCCTTCCATAAAAAGAGAAGGAGTTTCATTTTCTTATCGAAATCAATGGTAATATTGGATATATTTAGTTCCTATCAGAGTAATCCAAAAATCTTAATCTCCCCTCCCCCTCTAACTTTCTAATCTAATCAACTCTCAATAACCAAAACCTCCTACTGGAATATAACTCTAAAAACCTTCAATCTAACATTATTTTTTCCAACCGCTGATTAAACAAAACATCCTCTAAGTCATTGAAAATACAAGGTTTAAAGGGTATTTTTTCTTAACTTTTAAAAAAACACAAATCGGTTGGAAAAATTTCAGAGAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAAATAAGGAATGGCTTAACTGCAGTG # Right flank : TTATACAAGACATTGTGAACCACAATATAAGATGTATTATCGAACCTTAATATAAAAAAATAAAATAATAAAATTCCGAATATAGCTATTGAACATAATATTATAAACACAGTTTGTAATATTACCGCTCTGCTTTCACTGTCTTTATTTATGAGTCTTTCCCTCCTTGATGGTATTATATTTTATGCATTAAAAAAGAGCCCTATTAAGAGCTCTTAAAATTTAATAATTTTTCTATTTCGCATATATACACTTGTGTGGTCTTCCTGGAGCTGGTACCATCCCACAGTAGATGCAAATCTCGGCATCTACTTCATCATTCTCTTTAGATGCTCTCCAGCTACAAACATGATTTTGTCCTGGATATACTCTCTCTCCGCATTTAGGGCAAGCTGGATATGCATTAGCCACTACACTTGGGATCATTACTGTAACAAGAAGGGCTATTCCCGCTATGCAAGTAATAAGTACTTTTTTTAAATCCATTTTAGATCCTCCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 3 178966-179386 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000009.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 178966 30 100.0 34 .............................. TAGTACGCATACCCTGTCCTAGTTCCACCATATC 179030 30 100.0 34 .............................. ATGATGATGAAATAAATGATATAGATAAGATAAG 179094 30 100.0 36 .............................. ATATAAAACTTACTACAAGTATACCCAAATACAATA 179160 30 100.0 35 .............................. ATTAACCCATTTGCATATATTGCATCATCATTTTC 179225 30 100.0 36 .............................. TTGTGATTTATATGACTAGATAATTGATACATTTTA 179291 30 100.0 36 .............................. AATAGCAACCATGTAAAAGCGTCATTTATAGTTGTT 179357 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 99.0 35 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : AATATAGGATTATGAAAATACCTTAATTCTATAACATCTTTCTCAAGTTGAGTTAATACTTTAGTCGAATTTTCTATTTTCTCGATTATAGCTTCATTTTTATTTATTATATATTGATAATATTTTATGTCGTTATCTACTGTTCACCCTTAATATGAGATGTATTTAAGCAGGAACCCCAAATCTGCGATTTGGCGTGAGTCGCTTACTTTTAGAGTACTCCTTCCATAAAAAGAAAAGGAGTTTCATTTTCTAATCAACTCTCAATAACCAAAACCTCCTACTGGAATATAACTCTAAAAACCTTTGATTTAGCATTATATTTTTCCAACCTCCAATTAAACAAGATACCCCATAAGTCATTGAAAATACAAGGTTTAAAGGGTGTTTTTTATAAACTTTTTAAAAACCACAAATCGATTGAAAAAATTTCAGAGAAACCCTTTATTTTCAACAGGTTAAAGGCTATAATGAAATTAAGGAATGGCTTAATTTCAGTG # Right flank : CAGAGAACCAAGATTTAAAATCTTGTGTGAATCGCTTACTCTTCGAGTACTCCTTCGACGAAGAGAGAAGGAGTTTCATTTTCTAATCAACTCTTGATAACCAAAACCTGCTACTGGAATATAACTCTAAAAACCTTCAATTCAGCATTATATTTTTTCCAACCGCTGATTAAACAAAACATCCTCTAAGTCATTGAAATTTCAAAGTTTAAAGGGTATTTTTTATAAACTTTTCAAAAAACGCAAATCGGTTGGAAAAATTTCAGAGAAACCCTTTATTTTCAACACTTTAAAGGATATAATGAAAATAAGGAATGGCTTAGCTACAGTGGTTGAACCTTAAGCAGAGAACCCAAATCTGCGATTTGGTGTGAATCGCTTACTCCTTCGACAAAGAGAGAAGGAGTTTCATTTCCCTATTAAAAATCAATTGCTGAATCTATAGTTGAACCTTAACATAAGATGTATTTAAATGGTGTTTCGCCACCATTAAGGGCGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 187006-187670 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000009.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================= ================== 187006 30 100.0 35 .............................. AATTTTAATTTTTCTATTAAATTAGATATCTGTTC 187071 30 100.0 36 .............................. TGAAGTTCTCTAGCGTTTACTACTTTTCCATTTTCA 187137 30 100.0 38 .............................. CTGGTGTTTACAAACATTTTGCAAGCCCTGTTAATAAC 187205 30 96.7 35 ......G....................... GTTGGATAACATAAACATTGCGGATGCGGTATAGG 187270 30 93.3 141 ............................GC AGAGAACCCAAATCTGCGATTTGGTGTGAGTCGCTTAAGTAGGGAACCAAGATTTAAAATCTTGTGTGAATCGCTTACTCTTCGAGTACTCCTTCGACAAAGAGAGAAGGAGTTTCATCAAAATCAATTGATAAATCTTTT 187441 30 93.3 40 A..A.......................... CAGATTCTTCACTTGGAACTGAAAGAGAATTACTGCAGTG 187511 30 90.0 35 ........C......AG............. TTTGTGAAGCCTAAACGTGTAACTGAATGGATAAT 187576 30 90.0 35 ........C......AG............. GGCATTACCATTTCTGGAGCGCCAGATCCTCCGCC 187641 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ============================================================================================================================================= ================== 9 30 95.2 50 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : TTACTCTTCGAGTACTCCTTCGATGAAGAGAGAAGGAGTTTCATCAAAATCAATTGATAAATCTTTTATTGAACCTTAACATGAGATGTATTTAAATTAGAAATATTTATATATACCTATTTTGTCTTGTTGGTTGAACCTTAACATAAGATGTATTTAAATGGTGTTTCGCCACCATTAAGGGCGACCGATAATAGAGTTGAATCGCTTACTCTTCCAGTACTCCTTCCATAAAAAGAGAAGGAGTTTCGTTTTATAATCAACTCTTGATATCCACCCCCTACTGGAATATAACTCTAAAAACCTTCAATTTAAAATTATATTTTTCCAACCGATGATTAAACAGAACATCCTCTAAGCCATTGAAATTTCAAAGTTTAAGGTGTGTTTTTCATCAACTTTTTAAAAAACACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGTTTAAAGGATATAATGAAAATAAGGAATGGCTTAACTACAGTG # Right flank : CAGAGAACCAAGATTTAAAATCTTGTGTGAATCGCTTACTCTTCTAGTACTCCTTCGATGAAAAGAGAAGGAGTTTCATTTTTTATCAAATTTAACTCTAGCAAAATAATTGAAAAAGTCTCACTCTCTCCTTCCCTTCTAATTTCCTAATCTCATCAACTCCTAATCGCCAAAATCCCATACTTCAATTAATTGTAAATCCTTCAATTTAACATTATATTTTTCCAACCTCCAATTAAACAATACACCCTCTAAGCCATTGAAAATTCAAGGTTTAAGTGATGTTTTCATTAACTTTTTAAAAAACACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAAGTTAAAGGCTATAATGAAATTAGATAATGGCTTAACTACAGTGGTTGAACCTTAAGCAGAGAACCCAAATCTATGATTTGGTGTGAATCGCTTACTCCTTCGATGAAGAGAGAAGGAGTTTCATCAAAATCAATTGATAAATCTTTT # Questionable array : NO Score: 4.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-1.32, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : GTTGAACCCTAACATAGGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 5 188397-188170 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000009.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 188396 30 100.0 36 .............................. AAATCCACTAAATAAAAGAGTTACTGCAGATAGCGC 188330 30 100.0 35 .............................. GGGGATTAAGTAGTATCAGTACTTAATCCTTGCTC 188265 30 100.0 36 .............................. TTACTACGCCGAGAGGCAAGGTGTAATTGAAATATA 188199 30 90.0 0 .............T............T..T | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 97.5 36 ATTTAAATACATCCTATGTTAAGGTTCAAC # Left flank : AATAAAAGATTTATCAATTGATTTTGATGAAACTCCTTCTCTCTTTGTCGAAGGAGTACTCGAAGAGTAAGCGATTCACACAAGATTTTAAATCTTGGTTCCCTACTTAAGCGACTCACACCAAATCGCAGATTTGGGTTCTCTGCTTAAATACATCTCATGTTAAGGTTCAACCCTATACCGCATCCGCAATGTTTATGTTATCCAACATTTAAATACATCTCATGTTAAGCTTCAACGTTATTAACAGGGCTTGCAAAATGTTTGTAAACACCAGATTTAAATACATCTCATGTTAAGGTTCAACTGAAAATGGAAAAGTAGTAAACGCTAGAGAACTTCAATTTAAATACATCTCATGTTAAGGTTCAACGAACAGATATCTAATTTAATAGAAAAATTAAAATTATTTAAATACATCTCATGTTAAGGTTCAACCACTGTAGTTAAGCCATTCCTTATTTTCATTATATCCTTTAAANCACAACTGCTATATGGCA # Right flank : AAAAGATTTATCAATTGATTTTGATGAAACTCCTTCTCTCTTCATCGAAGGAGTAAGCGATTCACACCAAATCATAGATTTGGGTTCTCTGCTTAAGGTTCAACCACTGTAGTTAAGCCATTATCTAATTTCATTATAGCCTTTAACTTGTTGAAAATAAAGGGTTTGTTTAAAATTTTTCCAACCGATTTGTGTTTTTTAAAAAGTTAATGAAAACATCACTTAAACCTTGAATTTTCAATGGCTTAGAGGGTGTATTGTTTAATTGGAGGTTGGAAAAATATAATGTTAAATTGAAGGATTTACAATTAATTGAAGTATGGGATTTTGGCGATTAGGAGTTGATGAGATTAGGAAATTAGAAGGGAAGGAGAGAGTGAGACTTTTTCAATTATTTTGCTAGAGTTAAATTTGATAAAAAATGAAACTCCTTCTCTTTTCATCGAAGGAGTACTAGAAGAGTAAGCGATTCACACAAGATTTTAAATCTTGGTTCTCTG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCCTATGTTAAGGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 6 188459-189123 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000009.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================= ================== 188459 30 100.0 35 .............................. AATTTTAATTTTTCTATTAAATTAGATATCTGTTC 188524 30 100.0 36 .............................. TGAAGTTCTCTAGCGTTTACTACTTTTCCATTTTCA 188590 30 100.0 38 .............................. CTGGTGTTTACAAACATTTTGCAAGCCCTGTTAATAAC 188658 30 96.7 35 ......G....................... GTTGGATAACATAAACATTGCGGATGCGGTATAGG 188723 30 93.3 141 ............................GC AGAGAACCCAAATCTGCGATTTGGTGTGAGTCGCTTAAGTAGGGAACCAAGATTTAAAATCTTGTGTGAATCGCTTACTCTTCGAGTACTCCTTCGACAAAGAGAGAAGGAGTTTCATCAAAATCAATTGATAAATCTTTT 188894 30 93.3 40 A..A.......................... CAGATTCTTCACTTGGAACTGAAAGAGAATTACTGCAGTG 188964 30 90.0 35 ........C......AG............. TTTGTGAAGCCTAAACGTGTAACTGAATGGATAAT 189029 30 90.0 35 ........C......AG............. GGCATTACCATTTCTGGAGCGCCAGATCCTCCGCC 189094 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ============================================================================================================================================= ================== 9 30 95.2 50 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : ATTAACTTTTTAAAAAACACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAAGTTAAAGGCTATAATGAAATTAGATAATGGCTTAACTACAGTGGTTGAACCTTAAGCAGAGAACCCAAATCTATGATTTGGTGTGAATCGCTTACTCCTTCGATGAAGAGAGAAGGAGTTTCATCAAAATCAATTGATAAATCTTTTATTAAACCTTAACATAAGATGTATTTAAATTATATTTCAATTACACCTTGCCTCTCGGCGTAGTAAGTTGAACCTTAACATAGGATGTATTTAAATGAGCAAGGATTAAGTACTGATACTACTTAATCCCCGTTGAACCTTAACATAGGATGTATTTAAATGCGCTATCTGCAGTAACTCTTTTATTTAGTGGATTTGTTGAACCTTAACATAGGATGTATTTAAATTGCCATATAGCAGTTGTGNTTTAAAGGATATAATGAAAATAAGGAATGGCTTAACTACAGTG # Right flank : CAGAGAACCAAGATTTAAAATCTTGTGTGAATCGCTTACTCTTCTAGTACTCCTTCGATGAAAAGAGAAGGAGTTTCATTTTTTATCAAATTTAACTCTAGCAAAATAATTGAAAAAGTCTCACTCTCTCCTTCCCTTCTAATTTCCTAATCTCATCAACTCCTAATCGCCAAAATCCCATACTTCAATTAATTGTAAATCCTTCAATTTAACATTATATTTTTCCAACCTCCAATTAAACAATACACCCTCTAAGCCATTGAAAATTCAAGGTTTAAGTGATGTTTTCATTAACTTTTTAAAAAACACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAAGTTAAAGGCTATAATGAAATTAGATAATGGCTTAACTACAGTGGTTGAACCTTAAGCAGAGAACCCAAATCTATGATTTGGTGTGAATCGCTTACTCCTTCGATGAAGAGAGAAGGAGTTTCATCAAAATCAATTGATAAATCTTTT # Questionable array : NO Score: 4.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-1.32, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : GTTGAACCCTAACATAGGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 7 190177-189623 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000009.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 190176 30 93.3 35 GC............................ TAATAAAGCAAACAAAAGATAGGGAGGTAGAATAA 190111 30 100.0 35 .............................. AGTAATTACAATGCTTTTCAGGACTTTTCTGCAGG 190046 30 100.0 34 .............................. AATATGGACAAGAGCTTAGGAATATAATAGGCTC 189982 30 100.0 36 .............................. AGGTTTATTTCTAAAAGATTTACCATCATATTTAAA 189916 30 100.0 37 .............................. TATTCTTCCCCCCCTCAACCACAACTGCTATATGGCA 189849 30 100.0 36 .............................. AAATCCACTAAATAAAAGAGTTACTGCAGATAGCGC 189783 30 100.0 35 .............................. GGGGATTAAGTAGTATCAGTACTTAATCCTTGCTC 189718 30 100.0 36 .............................. TTACTACGCCGAGAGGCAAGGTGTAATTGAAATATA 189652 30 90.0 0 .............T............T..T | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 98.1 36 ATTTAAATACATCCTATGTTAAGGTTCAAC # Left flank : GACAACATATATTTAAATACATCTCATGTTAAGGTTCAACTTGTAAAAACTGTATAAAGGATATCTTTGTAATAAAATTTAAATACATCTCATGTTAAGGTTCAACAATAGATCATTAAAAATCTTAAATATAGCAGTACATATTTAAATACATCTCATGTTAAGGTTCAACCACTGTAGTTAAGCCATTCTTTAATTTCATTATATCCTTTAACCTGTTGAAAATAAAGGGTTTCTTTGAAATTTTTCCAACCGATTTGTGTTTTTTCAAAAGTTAATGAAAAACATCCCTTAAACCTTGAGTTTTCAATGGTTTAGATCATGTTTTGTTTAAGTGACGGTTGGAAAAATATAATGCTAAATTTAAGGTTTTTAGAGTTATATTCCAGTAGGAGGTTTGGGTATCGAGAGTTGATTAGAAAATGAAACTCCTTCTCTCTTTGTCGAAGGAGTACTCGAAGAGTAAGCGATTCACACAAGATTTTAAATCGTGGTTCCCT # Right flank : AAAAGATTTATCAATTGATTTTGATGAAACTCCTTCTCTCTTCATCGAAGGAGTAAGCGATTCACACCAAATCATAGATTTGGGTTCTCTGCTTAAGGTTCAACCACTGTAGTTAAGCCATTATCTAATTTCATTATAGCCTTTAACTTGTTGAAAATAAAGGGTTTGTTTAAAATTTTTCCAACCGATTTGTGTTTTTTAAAAAGTTAATGAAAACATCACTTAAACCTTGAATTTTCAATGGCTTAGAGGGTGTATTGTTTAATTGGAGGTTGGAAAAATATAATGTTAAATTGAAGGATTTACAATTAATTGAAGTATGGGATTTTGGCGATTAGGAGTTGATGAGATTAGGAAATTAGAAGGGAAGGAGAGAGTGAGACTTTTTCAATTATTTTGCTAGAGTTAAATTTGATAAAAAATGAAACTCCTTCTCTTTTCATCGAAGGAGTACTAGAAGAGTAAGCGATTCACACAAGATTTTAAATCTTGGTTCTCTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCCTATGTTAAGGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 8 190505-191319 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000009.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 190505 30 100.0 36 .............................. ATGTACTGCTATATTTAAGATTTTTAATGATCTATT 190571 30 100.0 36 .............................. TTTATTACAAAGATATCCTTTATACAGTTTTTACAA 190637 30 100.0 36 .............................. ATATGTTGTCTAGAGTCTCCACCTTGAGCCCCCTCC 190703 30 100.0 36 .............................. ATAGAATTATCCATTTCCTTAAGGTTATCATTTAAT 190769 30 100.0 35 .............................. TTGCCTTCGCTATATTCAGCAGCGTATTCATTTAC 190834 30 100.0 35 .............................. CTAAGTTCTCTTAATCTATCCCCAAACAAACTTAT 190899 30 100.0 36 .............................. ATTTTACAACTTCCTTTCTCCTACTATTATTTTCTT 190965 30 100.0 37 .............................. CAATATCAGAAACCAGTGCCAGATCTTCCCCGGACGC 191032 30 100.0 36 .............................. ATGATTATGTTATCTGCTTCTATCGCCCTTATTTCT 191098 30 100.0 34 .............................. GCCCATTGTAATATTTCTGTGTGTAAATTTTCCA 191162 30 100.0 32 .............................. TAATTTTGTTCCCATATTCTAATCTCTCCTTT 191224 30 100.0 36 .............................. AGAGAGAGCGTTAAAAGAAACTAAGGATTTTAATCG 191290 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.5 36 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : CTTGTCCATATTGTTGAACCTTAACATAGGATGTATTTAAATCCTGCAGAAAAGTCCTGAAAAGCATTGTAATTACTGTTGAACCTTAACATAGGATGTATTTAAATTTATTCTACCTCCCTATCTTTTGTTTGCTTTATTAGTTGAACCTTAACATAGGATGTATTTAAGCAGGGAACCACGATTTAAAATCTTGTGTGAATCGCTTACTCTTCGAGTACTCCTTCGACAAAGAGAGAAGGAGTTTCATTTTCTAATCAACTCTCGATACCCAAACCTCCTACTGGAATATAACTCTAAAAACCTTAAATTTAGCATTATATTTTTCCAACCGTCACTTAAACAAAACATGATCTAAACCATTGAAAACTCAAGGTTTAAGGGATGTTTTTCATTAACTTTTGAAAAAACACAAATCGGTTGGAAAAATTTCAAAGAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAATTAAAGAATGGCTTAACTACAGTG # Right flank : CAGAGAACCCAAATCTGCGATTTGGTTTGAGTCGCTTACTCCTTCGATAAGAGAGAAGGAGTTTCATTTTTTATCAAATTTAACTCTAGCAAAATAATTGAAAAAGTCTCACCCTCCCCTACTCTTCTAATTTACTAATCTCATCAACTCCTAATGGCCAAAATCCCATACTGCAATATAATTATAAAGACTTCGATTTAACATTATATTTTTCCAACCGTCACTTAAACAAAACATCCTCTAAACCATTGAAATCTCAAAGTTTAAGGTGTGTTTTTTATTAACTTTTTAAAAAACACAAATCGGTTGGAAAAATTTCAGAGAAACCCTTTATCTTCAACAGGTTAAAGGCTATAATGAAATTAGAGAATGGCTTAACTGCAGTGGTTGAACCCTAACATAGGATGTATTTAAATAAATTTACTAAATAGCATTTTAGAGTTAACAGGATCGTTGAACCCTAACATAGGATGTATTTAAATAAGCAATATAGATAATAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 9 192455-191705 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000009.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 192454 30 96.7 36 .....................A........ TGGATATTTCATTGATTTAACCTATGCCCAATTTGA 192388 30 93.3 35 .............T.......A........ GGCGGAGGATCTGGCGCTCCAGAAATGGTAATGCC 192323 30 100.0 37 .............................. AAGAAAGAGAGAAGAGCGAGGAGGAAAGGAAATCAAA 192256 30 100.0 36 .............................. AAAAAACAGAGAAACTATTAAATTCATATGTAGAAA 192190 30 100.0 35 .............................. GGATTAGGATTAAATTCTTTGATTCTATTAATCAT 192125 30 100.0 36 .............................. CCGCTATCTTTAAAATCTATAAAGTAACGAAGAATT 192059 30 100.0 35 .............................. TTAATGAGCACTGGTAACACTTATGTTTTATATGA 191994 30 100.0 35 .............................. TATGAATCCATTCCAGTGTTTACTAAAGATATATT 191929 30 100.0 35 .............................. TTTTAGTTAAAGCACTATACAAACTTGCTTTTGGA 191864 30 100.0 34 .............................. AACCTCAAATTGTTCTGTATTATCTATATTGCTT 191800 30 100.0 36 .............................. GATCCTGTTAACTCTAAAATGCTATTTAGTAAATTT 191734 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 99.2 36 ATTTAAATACATCCTATGTTAGGGTTCAAC # Left flank : CATTTCATACATACTTTTTATAATTCCTAATACTACAATACCGACCTGTGTAAAAGTTATATAATTATAGAATTTACTACTCAAAAAAACACCAACACCTCCAACAAGGATAACTAATAGACCAGTATACAGCATATCTCCGCCTACTATTCTTGATACTTTATCTTTATCGTATTTTTTTGCATCAAACCCATTTAGCATATCTCCCGCATTTTGACTTTTAATTACCCACCCCAAAAAGGTAAATAGTCCTCCCATAAGCATTGTAATTATAATTAGTCCATATATATTTACATTCTTCATATAAAATCTCCATAATCTTATTATTACTATATGATATTTCTTCCTATTTATCAGTTAGTCTAATAAACAACTAACTCACATAATAATACAATTGATCAATACTTTATATTGTTATTATACATAATTTATGGCTTATAATTCCAGTGATTATATAAAAAAATAACTTTATATAAATATTGGTTGCCTTATCTTAAAAT # Right flank : CACTGCAGTTAAGCCATTCTCTAATTTCATTATAGCCTTTAACCTGTTGAAGATAAAGGGTTTCTCTGAAATTTTTCCAACCGATTTGTGTTTTTTAAAAAGTTAATAAAAAACACACCTTAAACTTTGAGATTTCAATGGTTTAGAGGATGTTTTGTTTAAGTGACGGTTGGAAAAATATAATGTTAAATCGAAGTCTTTATAATTATATTGCAGTATGGGATTTTGGCCATTAGGAGTTGATGAGATTAGTAAATTAGAAGAGTAGGGGAGGGTGAGACTTTTTCAATTATTTTGCTAGAGTTAAATTTGATAAAAAATGAAACTCCTTCTCTCTTATCGAAGGAGTAAGCGACTCAAACCAAATCGCAGATTTGGGTTCTCTGCTTAAATACATCTCATGTTAAGGTTCAACCGATTAAAATCCTTAGTTTCTTTTAACGCTCTCTCTATTTAAATACATCTCATGTTAAGGTTCAACAAAGGAGAGATTAGAATAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCCTATGTTAGGGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 10 193519-194140 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000009.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 193519 31 100.0 36 ............................... CGAACCGTTAACGAACCATCAACAAACCCCTAACGA 193586 31 100.0 35 ............................... AAAAGTCTATAATATTCCTTGCGATTCGGTCGATT 193652 31 100.0 35 ............................... GTTCATACGTCAGGCGGACACTTTACATCTGATAG 193718 31 100.0 33 ............................... TTTTGCATTGCTCGGAAATTGTTATTATCCTCC 193782 31 100.0 33 ............................... TTTGCGACACGTTTAATTATTTGCTAGACTCTT 193846 31 100.0 35 ............................... AGTGGTTCGCGCCTTTATTCAATAATTAAAAATCA 193912 31 96.8 35 ..............................T TGACGAGGAATGGAATGCCATAGCTAGAGGATTAA 193978 31 96.8 36 ..............................G AAAAGTTTTATACAATACTAACCGCTATTGGAAAAG 194045 31 100.0 34 ............................... CTGATGAAGCCGTCTTAACACTAAACTCTAGTCC 194110 31 87.1 0 ........C.......G...........GC. | ========== ====== ====== ====== =============================== ==================================== ================== 10 31 98.1 35 GTTGAACCTTAACATAAGATGTATTTAAATA # Left flank : TGAACAAGTTACCTTGTCCATTTTTATATGCTTACTTATTAACACTGGTTTAAAACAGAACCAAATCTTTTTATAAAATTAAACAAATGTACTTGGTCAAGTTGAACCCTAACATAGGATGTATTTAAGCAGAGAACCAAAATNTCGAGTACTCCTTCGATGAAAAGAGAAGGAGTTTCATTTTTTATCAAATTTAACTCTAGCAAAATAATTGAAAAAGTCTCACTCTCCCCTACTCTTCTAATTTACTAATCTCATCAACTCCTAATGGCCAAAATCCCATACTGCAATATAATTATAAAGCCTTCGATTTAACATTATATTTTTCCAACCGTCACTTAAACAAAACATCCTCTAAACCATTGAAATCTCAAAGTTTAAGGTGTGTTTTTTATTAACTTTTTAAAAAACACAAATCGGTTGGAAAAATTTCAGAGAAACCCTTTATCTTCAGTAGTTTAAAGGCTATAATGAAATTAGAGAATGGCTTAACTGCAGTG # Right flank : AGAGAACCAAGATTAAAAATCTTGTGTGAATCGCTTACTCTTCGAGTACTCCTTTGATGAAAAGAGAAGGAGTTTCATTTTCTTATCAAAATCAATGGTAATACTGGATATATTTAGTTCCTATCAGAGTAATCGAAAAATCTTAATCTCCCCTCCCCCTCTAACTTTCTAATCTAATCAGCTCTTGATATCAAAAAACTCCCACTGGAATATCATTCCAAAGCCCTTCAGTTTAACATTATATCTTTCCAACCTCCCTTTAAATGAAACCTACCCTAAACCATTCAAAATACAAGGTTTAAAGGGTATTGCTTATTAGTTTTTTAAAAAACACAAATCGGTTGGAAAAATTTTAAAGAAACCCTTTATTTTCAACAGGTTAAAGGCTATAATGAAATTAAAGAATGGCTTAACTACTGTGGTTGAACCCTAACATAGGATGTATTTAAATATTTTATTTTGCTCTGCTAAACTTTTAACCTCTTGCGTTGAACCCTAAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAAGATGTATTTAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 11 194561-195111 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000009.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================================================================== ================== 194561 30 100.0 36 .............................. ATTTTATTTTGCTCTGCTAAACTTTTAACCTCTTGC 194627 30 100.0 35 .............................. TGATTAAAGTTTAGAACTACATCCGACATGTCACA 194692 30 100.0 36 .............................. TATATTTCTTTTGCTTGTTTCCTGTCAATTTTCCCT 194758 30 100.0 34 .............................. ATGTGCTATATACGAATTAGTAAAGTATATTTTA 194822 30 100.0 36 .............................. TCTTAATGATCATCCTCAAGTAAGAGAATGGTATAA 194888 30 100.0 35 .............................. CATCTAGCTATAAGAAAGAATCTTTTTCTAGTTGT 194953 30 93.3 99 ............................GC AGAGAACCCAAATCTATGATTTGGTGTGAATCGCTTACTCCTTCGATGAAGAGAGAAGGAGTTTCATTTCCCTATTAAAAATCAATTGCTGAATCTATA 195082 30 90.0 0 ...T....T.......A............. | ========== ====== ====== ====== ============================== =================================================================================================== ================== 8 30 97.9 45 GTTGAACCCTAACATAGGATGTATTTAAAT # Left flank : AGATGTATTTAAATACTGATGAAGCCGTCTTAACACTAAACTCTAGTCCGTTGAACCCTAACATAGGATGTATTTAAGCAGAGAACCAAGATTAAAAATCTTGTGTGAATCGCTTACTCTTCGAGTACTCCTTTGATGAAAAGAGAAGGAGTTTCATTTTCTTATCAAAATCAATGGTAATACTGGATATATTTAGTTCCTATCAGAGTAATCGAAAAATCTTAATCTCCCCTCCCCCTCTAACTTTCTAATCTAATCAGCTCTTGATATCAAAAAACTCCCACTGGAATATCATTCCAAAGCCCTTCAGTTTAACATTATATCTTTCCAACCTCCCTTTAAATGAAACCTACCCTAAACCATTCAAAATACAAGGTTTAAAGGGTATTGCTTATTAGTTTTTTAAAAAACACAAATCGGTTGGAAAAATTTTAAAGAAACCCTTTATTTTCAACAGGTTAAAGGCTATAATGAAATTAAAGAATGGCTTAACTACTGTG # Right flank : TGGTGTTTCGCCACCATTAAGGGCGACCGATAATAGAGTTGAATCGCTTACTCTTCCAGTACTCCTTCCATAAAAAGAGAAGGCGTTTCGTTTTATAATCAACTCTTGATATCCACCCCCTACTGGAATATAACTCTAAAAACCTTCAATTTAAAATTATATTTTTCCAACCGATGATTAAACAGAACATCCTCTAAGCCATTGAAATTTCAAAGTTTAAGGTGTGTTTTTCATCAACTTTTTAAAAAACACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGTTTAAAGGATATAATGAAAATAAGGAATGGCTTAACTACAGTGGTTGAACCTTAACATGAGATGTATTTAAATAATTTTAATTTTTCTATTAAATTAGATATCTGTTCGTTGAACCTTAACATGAGATGTATTTAAATTGAAGTTCTCTAGCGTTTACTACTTTTCCATTTTCAGTTGAACCTTAACATGAGATGTATTTAAAT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.84, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 12 195450-196114 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000009.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================= ================== 195450 30 100.0 35 .............................. AATTTTAATTTTTCTATTAAATTAGATATCTGTTC 195515 30 100.0 36 .............................. TGAAGTTCTCTAGCGTTTACTACTTTTCCATTTTCA 195581 30 100.0 38 .............................. CTGGTGTTTACAAACATTTTGCAAGCCCTGTTAATAAC 195649 30 96.7 35 ......G....................... GTTGGATAACATAAACATTGCGGATGCGGTATAGG 195714 30 93.3 141 ............................GC AGAGAACCCAAATCTGCGATTTGGTGTGAGTCGCTTAAGTAGGGAACCAAGATTTAAAATCTTGTGTGAATCGCTTACTCTTCGAGTACTCCTTCGACAAAGAGAGAAGGAGTTTCATCAAAATCAATTGATAAATCTTTT 195885 30 93.3 40 A..A.......................... CAGATTCTTCACTTGGAACTGAAAGAGAATTACTGCAGTG 195955 30 90.0 35 ........C......AG............. TTTGTGAAGCCTAAACGTGTAACTGAATGGATAAT 196020 30 90.0 35 ........C......AG............. GGCATTACCATTTCTGGAGCGCCAGATCCTCCGCC 196085 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ============================================================================================================================================= ================== 9 30 95.2 50 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : TGTGTTGAACCCTAACATAGGATGTATTTAAGCAGAGAACCCAAATCTATGATTTGGTGTGAATCGCTTACTCCTTCGATGAAGAGAGAAGGAGTTTCATTTCCCTATTAAAAATCAATTGCTGAATCTATAGTTTAACCTTAACATAAGATGTATTTAAATGGTGTTTCGCCACCATTAAGGGCGACCGATAATAGAGTTGAATCGCTTACTCTTCCAGTACTCCTTCCATAAAAAGAGAAGGCGTTTCGTTTTATAATCAACTCTTGATATCCACCCCCTACTGGAATATAACTCTAAAAACCTTCAATTTAAAATTATATTTTTCCAACCGATGATTAAACAGAACATCCTCTAAGCCATTGAAATTTCAAAGTTTAAGGTGTGTTTTTCATCAACTTTTTAAAAAACACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGTTTAAAGGATATAATGAAAATAAGGAATGGCTTAACTACAGTG # Right flank : CAGAGAACCAAGATTTAAAATCTTGTGTGAATCGCTTACTCTTCTAGTACTCCTTCGATGAAAAGAGAAGGAGTTTCATTTTTTATCAAATTTAACTCTAGCAAAATAATTGAAAAAGTCTCACTCTCTCCTTCCCTTCTAATTTCCTAATCTCATCAACTCCTAATCGCCAAAATCCCATACTTCAATTAATTGTAAATCCTTCAATTTAACATTATATTTTTCCAACCTCCAATTAAACAATACACCCTCTAAGCCATTGAAAATTCAAGGTTTAAGTGATGTTTTCATTAACTTTTTAAAAAACACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAAGTTAAAGGCTATAATGAAATTAGATAATGGCTTAACTACAGTGGTTGAACCTTAAGCAGAGAACCCAAATCTATGATTTGGTGTGAATCGCTTACTCCTTCGATGAAGAGAGAAGGAGTTTCATCAAAATCAATTGATAAATCTTTT # Questionable array : NO Score: 4.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-1.32, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : GTTGAACCCTAACATAGGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 13 197168-196614 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000009.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 197167 30 93.3 35 GC............................ TAATAAAGCAAACAAAAGATAGGGAGGTAGAATAA 197102 30 100.0 35 .............................. AGTAATTACAATGCTTTTCAGGACTTTTCTGCAGG 197037 30 100.0 34 .............................. AATATGGACAAGAGCTTAGGAATATAATAGGCTC 196973 30 100.0 36 .............................. AGGTTTATTTCTAAAAGATTTACCATCATATTTAAA 196907 30 100.0 37 .............................. TATTCTTCCCCCCCTCAACCACAACTGCTATATGGCA 196840 30 100.0 36 .............................. AAATCCACTAAATAAAAGAGTTACTGCAGATAGCGC 196774 30 100.0 35 .............................. GGGGATTAAGTAGTATCAGTACTTAATCCTTGCTC 196709 30 100.0 36 .............................. TTACTACGCCGAGAGGCAAGGTGTAATTGAAATATA 196643 30 90.0 0 .............T............T..T | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 98.1 36 ATTTAAATACATCCTATGTTAAGGTTCAAC # Left flank : GACAACATATATTTAAATACATCTCATGTTAAGGTTCAACTTGTAAAAACTGTATAAAGGATATCTTTGTAATAAAATTTAAATACATCTCATGTTAAGGTTCAACAATAGATCATTAAAAATCTTAAATATAGCAGTACATATTTAAATACATCTCATGTTAAGGTTCAACCACTGTAGTTAAGCCATTCTTTAATTTCATTATATCCTTTAACCTGTTGAAAATAAAGGGTTTCTTTGAAATTTTTCCAACCGATTTGTGTTTTTTCAAAAGTTAATGAAAAACATCCCTTAAACCTTGAGTTTTCAATGGTTTAGATCATGTTTTGTTTAAGTGACGGTTGGAAAAATATAATGCTAAATTTAAGGTTTTTAGAGTTATATTCCAGTAGGAGGTTTGGGTATCGAGAGTTGATTAGAAAATGAAACTCCTTCTCTCTTTGTCGAAGGAGTACTCGAAGAGTAAGCGATTCACACAAGATTTTAAATCGTGGTTCCCT # Right flank : AAAAGATTTATCAATTGATTTTGATGAAACTCCTTCTCTCTTCATCGAAGGAGTAAGCGATTCACACCAAATCATAGATTTGGGTTCTCTGCTTAAGGTTCAACCACTGTAGTTAAGCCATTATCTAATTTCATTATAGCCTTTAACTTGTTGAAAATAAAGGGTTTGTTTAAAATTTTTCCAACCGATTTGTGTTTTTTAAAAAGTTAATGAAAACATCACTTAAACCTTGAATTTTCAATGGCTTAGAGGGTGTATTGTTTAATTGGAGGTTGGAAAAATATAATGTTAAATTGAAGGATTTACAATTAATTGAAGTATGGGATTTTGGCGATTAGGAGTTGATGAGATTAGGAAATTAGAAGGGAAGGAGAGAGTGAGACTTTTTCAATTATTTTGCTAGAGTTAAATTTGATAAAAAATGAAACTCCTTCTCTTTTCATCGAAGGAGTACTAGAAGAGTAAGCGATTCACACAAGATTTTAAATCTTGGTTCTCTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCCTATGTTAAGGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 14 197496-197985 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000009.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 197496 30 100.0 36 .............................. ATGTACTGCTATATTTAAGATTTTTAATGATCTATT 197562 30 100.0 36 .............................. TTTATTACAAAGATATCCTTTATACAGTTTTTACAA 197628 30 100.0 36 .............................. ATATGTTGTCTAGAGTCTCCACCTTGAGCCCCCTCC 197694 30 100.0 36 .............................. ATAGAATTATCCATTTCCTTAAGGTTATCATTTAAT 197760 30 100.0 35 .............................. TTGCCTTCGCTATATTCAGCAGCGTATTCATTTAC 197825 30 100.0 35 .............................. CTAAGTTCTCTTAATCTATCCCCAAACAAACTTAT 197890 30 100.0 36 .............................. ATTTTACAACTTCCTTTCTCCTACTATTATTTTCTT 197956 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 100.0 36 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : CTTGTCCATATTGTTGAACCTTAACATAGGATGTATTTAAATCCTGCAGAAAAGTCCTGAAAAGCATTGTAATTACTGTTGAACCTTAACATAGGATGTATTTAAATTTATTCTACCTCCCTATCTTTTGTTTGCTTTATTAGTTGAACCTTAACATAGGATGTATTTAAGCAGGGAACCACGATTTAAAATCTTGTGTGAATCGCTTACTCTTCGAGTACTCCTTCGACAAAGAGAGAAGGAGTTTCATTTTCTAATCAACTCTCGATACCCAAACCTCCTACTGGAATATAACTCTAAAAACCTTAAATTTAGCATTATATTTTTCCAACCGTCACTTAAACAAAACATGATCTAAACCATTGAAAACTCAAGGTTTAAGGGATGTTTTTCATTAACTTTTGAAAAAACACAAATCGGTTGGAAAAATTTCAAAGAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAATTAAAGAATGGCTTAACTACAGTG # Right flank : TCAATATCAGAAACCAGTGCCAGATCTTCCCCGGACGCGTTGAACCTTAANGTTAAAGGCTATAATGAAAATAAGGAATGGCTTAACTACAGTGGTTGAACCTTAAGCAGAGAACCCAAATCTGCGATTTGGTGTGAATCGCTTACTCCTTCGACAAAGAGAGAAGGAGTTTCATCAAAATCAATTGATAAATCTTTTATTAAACCTTAACATAGGATGTATTTAAATTACATAACAGTATGATTAATTTGAAAGTAAACAGTTGTTGAACCTTAACATAGGATGTATTTAAACATAAATAAGTGATTGAAAATATTATCCTCAAGAGAGTTGAACCTTAACATGAGATGTATTTAAGCAGAGAACCCAAATCTGGGATTTGGCGTGAATCGCTTACTCTTCGAGTACTCCTTCGATGAAAAGAGAAGGAGTTTCATTTTTTATCAAATTTAACTCTAGCAAAATAATTGAAAAAGTCTCACTCTCCCCTACTCTTCTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 296-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000010.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================================================================== ================== 295 30 90.0 99 .............T.......A....A... TATAGATTCAGCAATTGATTTTTAATAGGGAAATGAAACTCCTTCTCTCTTCATCGAAGGAGTAAGCGATTCACACCAAATCATAGATTTGGGTTCTCT 166 30 93.3 35 GC............................ ACAACTAGAAAAAGATTCTTTCTTATAGCTAGATG 101 30 100.0 36 .............................. TTATACCATTCTCTTACTTGAGGATGATCATTAAGA 35 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================================================================================== ================== 4 30 95.8 57 ATTTAAATACATCCTATGTTAGGGTTCAAC # Left flank : ACTTTCAAATTAATCATACTGTTATGTAATTTAAATACATCCTATGTTAAGGTTTAATAAAAGATTTATCAATTGATTTTGATGAAACTCCTTCTCTCTTTGTCGAAGGAGTAAGCGATTCACACCAAATCGCAGATTTGGGTTCTCTGCTTAAGGTTCAACCACTGTAGTTAAGCCATTCCTTATTTTCATTATAGCCTTTAACCTGTTGAAAATAAAGGGTTTGTTTAAAATTTTTCCAACCGATTTGTGTTTTTTAAAAAGTTGATGAAAAACACACCTTAAACTTTGAAATTTCAATGGCTTAGAGGATGTTCTGTTTAATCATCGGTTGGAAAAATATAATTTTAAATTGAAGGTTTTTAGAGTTATATTCCAGTAGGGGGTGGATATCAAGAGTTGATTATAAAACGAAACGCCTTCTCTTTTTATGGAAGGAGTACTGGAAGAGTAAGCGATTCAACTCTATTATCGGTCGCCCTTAATGGTGGCGAAACACC # Right flank : CTAAAA # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-2.54, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCCTATGTTAGGGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 2046-1296 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000010.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2045 30 96.7 36 .....................A........ TGGATATTTCATTGATTTAACCTATGCCCAATTTGA 1979 30 93.3 35 .............T.......A........ GGCGGAGGATCTGGCGCTCCAGAAATGGTAATGCC 1914 30 100.0 37 .............................. AAGAAAGAGAGAAGAGCGAGGAGGAAAGGAAATCAAA 1847 30 100.0 36 .............................. AAAAAACAGAGAAACTATTAAATTCATATGTAGAAA 1781 30 100.0 35 .............................. GGATTAGGATTAAATTCTTTGATTCTATTAATCAT 1716 30 100.0 36 .............................. CCGCTATCTTTAAAATCTATAAAGTAACGAAGAATT 1650 30 100.0 35 .............................. TTAATGAGCACTGGTAACACTTATGTTTTATATGA 1585 30 100.0 35 .............................. TATGAATCCATTCCAGTGTTTACTAAAGATATATT 1520 30 100.0 35 .............................. TTTTAGTTAAAGCACTATACAAACTTGCTTTTGGA 1455 30 100.0 34 .............................. AACCTCAAATTGTTCTGTATTATCTATATTGCTT 1391 30 100.0 36 .............................. GATCCTGTTAACTCTAAAATGCTATTTAGTAAATTT 1325 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 99.2 36 ATTTAAATACATCCTATGTTAGGGTTCAAC # Left flank : CATTTCATACATACTTTTTATAATTCCTAATACTACAATACCGACCTGTGTAAAAGTTATATAATTATAGAATTTACTACTCAAAAAAACACCAACACCTCCAACAAGGATAACTAATAGACCAGTATACAGCATATCTCCGCCTACTATTCTTGATACTTTATCTTTATCGTATTTTTTTGCATCAAACCCATTTAGCATATCTCCCGCATTTTGACTTTTAATTACCCACCCCAAAAAGGTAAATAGTCCTCCCATAAGCATTGTAATTATAATTAGTCCATATATATTTACATTCTTCATATAAAATCTCCATAATCTTATTATTACTATATGATATTTCTTCCTATTTATCAGTTAGTCTAATAAACAACTAACTCACATAATAATACAATTGATCAATACTTTATATTGTTATTATACATAATTTATGGCTTATAATTCCAGTGATTATATAAAAAAATAACTTTATATAAATATTGGTTGCCTTATCTTAAAAT # Right flank : CACTGCAGTTAAGCCATTCTCTAATTTCATTATAGCCTTTAACCTGTTGAAAATAAAGGGTTTCTTTGAAATTTTTCCAACCGATTTGTGTTTTTTAAAAAGTTAATAAAAAACACACCTTAAACTTTGAGATTTCAATGGTTTAGAGGATGTTTTGTTTAAGTGACGGTTGGAAAAATATAATGTTAAATCGAAGGCTTTATAATTATATTGCAGTATGGGATTTTGGCCATTAGGAGTTGATGAGATTAGTAAATTAGAAGAGTAGGGGAGGGTGAGACTTTTTCAATTATTTTGCTAGAGTTAAATTTGATAAAAAATGAAACTCCTTCTCTTTTCATCGAAGGAGTACTCGAAGAGTAAGCGATTCACGCCAAATCCCAGATTTGGGTTCTCTGCTTAAATACATCTCATGTTAAGGTTCAACTCTCTTGAGGATAATATTTTCAATCACTTATTTATGTTTAAATACATCCTATGTTAAGGTTCAACAACTGTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCCTATGTTAGGGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 3 18506-19325 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000010.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 18506 30 100.0 37 .............................. TAAATTTTTCCTTATTACTCATTTTAGCCACCTCTAT 18573 30 100.0 36 .............................. ATTTAATTATATTATATTCATTTATGGCACTATTAA 18639 30 100.0 35 .............................. TAAAGCGAAGTTAGTCTTCATCTTCGCTATCCCAA 18704 30 100.0 38 .............................. CCCGGACCAGGTACATAGATATAAATTATATAAAAAGG 18772 30 100.0 36 .............................. AATAGCTAGTTGGGGAGGTGGTTATGCTGCACATTC 18838 30 100.0 37 .............................. TTAAATCTTATATATCCTTTATATGTTCCTGCTTCCC 18905 30 100.0 34 .............................. CTGGATTCTTAGGAATGTATTCCTACTCATGGAG 18969 30 100.0 37 .............................. AATAGATTATTATATTTATCTTTGGAAGCTCCATAGG 19036 30 100.0 36 .............................. TCAGTATAAACTTGACACTCTACTTTAGTAGTTTCA 19102 30 100.0 33 .............................. TATCCACAGGGATATAAGTATAATTATAATTAT 19165 30 100.0 37 .............................. AATGCTCTTTTTAGCCAACTATGAACTGCATCAACCT 19232 30 100.0 34 .............................. AAACATATTGAACGGCCACCTTTTAGTGTTCCTT 19296 30 90.0 0 ........T...................GC | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.2 36 GTTGAACCCTAACATAGGATGTATTTAAAT # Left flank : AATTTGAATTATGTGAAAATATTAGAGTAAGTGTTATAATTGTTTTATCTCATAGCTATAATTGATAACACCCTTTTATAAGGAAACTCATCTTCTAAGATTAAGATAGAGAGTACTTCTTATAAGCAAATTCCACCTAAACCTAAGCGTTGAACCTTAACATGAGATGTATTTAAGCAGAGAACCCAAATCTATGATTTGGTGTGAATCGCTTACTCTTCGAGTACTCCTTCGATGAATAGAGAAGGAGTTTCATTTTATAATCAGCTCTCGATCCCCCCCTATTAGAACATAATCCCAAAAGCCTTTCATTTAGCATTATTTTTTCCAACCTCCCCTTAAACAAAAACTGCTTTAAACTATTGAAATGCCAAGGTTTAAAGGGTGTTTTTTATCAACTTTTGAAAAAGTACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGCTATAATGAAATTAGAGAATGGCTTAACTGCAGTG # Right flank : CAGAGAACCCAAATCTATGATTTGGTGTGAATCGCTTACTCTTTGAGTACTCCTTCCACAAAGAGAGGAGGAGTTTAACTATCCTATCAAAATCAATGTGAATCTATAGTTGAACCTTAAAAATCTAGAAAAAGTACCTCTTAAAGCTTTTAATTTTAAAAGCTTTAAGAGGTACTTATATTTATAACAAAATTTAAGCTATATAAAATAGTTTTATTTTTGTAGAGAAACTGTGAAATAAATGTAAAATTTGTAGAAATAATTATAATTTTAGGAAAATCATTGATTTCTTACAATAATATGTATTATAATCTAGTCATAGCATGTGGATGCATTTAAATGTGGTTAATATTAAAATTTATGTATTTATGAACCGTAACATTTAATGTTGTAGAATAGTTAATACCAGTAGTAAATATTAAAATTTATAATAATGGAGGTGAATTAATGAAAGTTTATGAATTAACATTAAAAATATTTCTTATTAAAGACTTACCGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 4 21151-20924 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000010.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 21150 28 100.0 38 ............................ GTGTCCAACCAATAGATGCCATGGAAAAACTTTATAAT 21084 28 100.0 38 ............................ TTTATGTATTTTAGGCAGTGATGTAGAGCCATGTTTAT 21018 28 100.0 39 ............................ TAGATAGGTCCTTGTTTTTATTTGATATTATAATAATAT 20951 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 4 28 100.0 39 TTAAATACATCTTATGTTAAGGTTCAAC # Left flank : TCTCTGCTTAAATACATCTCATGTTAAGGTTCAACAGGACGTTATTCAACAATTAGCAGAGTTACTTAAATTTAAATACATCCTATGTTAAGGTTCAACCACTGTAGTTAAGCCATTCTCTAATTTCATTATATCCTTTAACCTGTTGAAAATAAAGGGTTTGTTTAAAATTTTTTCAACCGATTTGTGCTTTTAGAAAATTTGATAGAAGATACAGTTTAAATCCTGTAGTATCAATGGTTTAAAGCAGTTTTTGTTTAAGGGGAGGTTGGAAAAAATAATGTTAGATTGAAGGATTTAGAATTAATTGAAGTATGGGATTTTGGCGATTAGGAGTTAATGAGATTAGGAAATTAGAAGGGAAGGAGAGAGTGAGACTTTTTCCATTACTTTGGCAGGAGCTAAATAGATTTATTAATTTTGATTAGAAAATGAAACTCCTTCTCTCTTTGTCGAAGGAGTAAGCGACTCACGCCAAATCATAGATTTGGGTTCTCTGC # Right flank : CACTGTAGTTAAGCCATTCCTTATTTTCATTATATCCTTTAACCTGTTGAAAATAAAGGGTTTCTCTGAAATTTTTCCAACCGATTTGTGGTTTTTAAAAAGTTGATGAAAAACACACCTTAAACTTTGAGATTTCAATGGTTTAGAGGATGTTTTGTTTAAGTGACGGTTGGAAAAATAATGTTAGATTGAAGGATTTAGAATTAATTGAAGTATGGGATTTTGGCGATTAGGAGTTAATGAGATTAGGAAATTAGAAGGGAAGGAGAGAATGAGACTTTTTCCATTACTTTGGCAGGGTTAAATAGATTTATTAATTTTGATTAGAAAATGAAACTCCTTCTCTCTTTGTCGAAGGAGTACTCAAGGGTAAGCGATTCACACAAGATTTTAAATCTTGGTTCTATGATTAAGCGACTCACGCCAAATCATAGATTTGGGTTCCCTGCTTAAATACATCCTATGTTAAGGTTCAACAATGAATTCAGCAATTGATTTTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAAATACATCTTATGTTAAGGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 5 21973-22658 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000010.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 21973 30 100.0 36 .............................. TTTAACTCATTTAAGGTATTTATATCATCCTCTAAT 22039 30 100.0 38 .............................. TTTAAAGGTTTAGGATGGTTACTTTTTTTACCTAACCA 22107 30 100.0 35 .............................. TCACCTGAAAGATTACCATCCCCATCAATATATAC 22172 30 100.0 37 .............................. TAGCTATATTGTCTAAATCCGGTTTCTTGGTTGGTCT 22239 30 100.0 35 .............................. GTTCCATAGATATTACCCTCCCAATCTGTATCCCT 22304 30 100.0 34 .............................. GCTTTACAATTTAGAAAAGAAAGTTTGTAAAATG 22368 30 100.0 36 .............................. ACTTCTTCATTTGTTGCATTTACTTGTGTTATAAGT 22434 30 100.0 35 .............................. ATTCCATTTAAGTTTTGTATAATTTTTTTCTTTCC 22499 30 100.0 35 .............................. TTATCAGGATTAATAAATTCCTCACAATATCCATT 22564 30 100.0 35 .............................. ATGTAATTATTTCTACATTTTGGTCTAATTTCCTT 22629 30 93.3 0 ................A...A......... | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 99.4 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : TGAAAAAATTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAATTAGAGAATGGCTTAACTACAGTGGTTGAACCTTAACATAGGATGTATTTAAATTTAAGTAACTCTGCTAATTGTTGAATAACGTCCTGTTGAACCTTAACATGAGATGTATTTAAGCAGAGAACCAAGATTTAAAATCTTGTGTGAATCGCTTACTCTTCCAGTACTCCTTCGACAAAGAGAGAAGGAGTTTCATTTTCTAATCAACTCTCAATAACCAAAACCTCCTACTGGAATATAACTCTAAAAACCTTCAATTTAGCATTATTTTTTCCAACCGTCGCTTAAACAAAACATGCTCTAAGCCATTGAAAATACAAGGTTTAAATGGTGTTTTTTATTAACTTTTGAAAATCACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAAATAAGGAATGGCTTAACTACAGTG # Right flank : TGGTGTTTCGCCACCATTAAGGGCGACCGATAATAGAGTTGAATCGCTTACTCTTCTAGTACTCCTTCGACAAAGTGAGAAGGCGTTTCATTTTATAATCAACTCTCCATAACCAAAACCTCCTACTGCAATATAACTCTAAAAACCTTTAATTTAGCATTATATTTTTCCAACCGTCACTTAAACAAAAACTGATTTAAACCATTGATACTACAGGATTTAAACTGTATCTTCTATCAAATTTTCTAAAAGCACAAATCGGTTGGAAAAATTTTGAACAAACCCTTTATTTTCAACAGGTTAAAGTATATAATGAGATTAGAGAATGGCTTAACTACAGTGGTTGAACCCTAACATAGGATGTATTTAAATTTCACCTTAAATACTTTACCATCCATAGATCTACGTTGAACCCTAACATAGGATGTATTTAAATTAGTCTGTAAAACCATCAAAGGTTTTGGCATCTCTTAGTTGAACCCTAACATAGGATGTATTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 6 23000-23358 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000010.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 23000 31 100.0 33 ............................... TCACCTTAAATACTTTACCATCCATAGATCTAC 23064 31 100.0 36 ............................... AGTCTGTAAAACCATCAAAGGTTTTGGCATCTCTTA 23131 31 100.0 33 ............................... ATATAAATACTTTTCGAAGCCATTTAGTAACTT 23195 31 100.0 36 ............................... GGCTAAATGGAAATATAAAGACTGAGTTGAAAGTGG 23262 31 100.0 35 ............................... AATATAAATTTAAATCACATCTTTCTTATAAACTT 23328 31 87.1 0 ........T......GA.............A | ========== ====== ====== ====== =============================== ==================================== ================== 6 31 97.9 35 GTTGAACCCTAACATAGGATGTATTTAAATT # Left flank : TTGAACCTTAACATAGGATGTATTTAAATTTATCAGGATTAATAAATTCCTCACAATATCCATTGTTGAACCTTAACATAGGATGTATTTAAATATGTAATTATTTCTACATTTTGGTCTAATTTCCTTGTTGAACCTTAACATAAGATATATTTAAATGGTGTTTCGCCACCATTAAGGGCGACCGATAATAGAGTTGAATCGCTTACTCTTCTAGTACTCCTTCGACAAAGTGAGAAGGCGTTTCATTTTATAATCAACTCTCCATAACCAAAACCTCCTACTGCAATATAACTCTAAAAACCTTTAATTTAGCATTATATTTTTCCAACCGTCACTTAAACAAAAACTGATTTAAACCATTGATACTACAGGATTTAAACTGTATCTTCTATCAAATTTTCTAAAAGCACAAATCGGTTGGAAAAATTTTGAACAAACCCTTTATTTTCAACAGGTTAAAGTATATAATGAGATTAGAGAATGGCTTAACTACAGTG # Right flank : ACTTGGAAAATTATAGATTAACTGGATTATATACGTTCAATCCTAGCACAAGTGACTTAGATTTTCTTTAGAACTGCTAATATTACTAGCTTTAAGAGTAATTATAGTATTCTAAATACTATAACAACACAAATTTATATAAAAATATGTGTTTATTTTTATATAAATTTTGATATAATAATATTAAGGAAACTTCACAACCAAGCTGAGGAGTTCATAATTTTAAAAAAGTTTATAATAGTCCTATAATAAGAAAAGCTTAGTGCGTCAACACTAAGCAATCCTTAGAACATTTATTTTGTTTTAGGGCTATTGGATTTTAACTATATTATTTGCTTAGTTAAGTAGAGAGAAGCACTAATCTTTGCGGGATGGGTGCTTTTTCTCTTTGCCATCAACTTCTATGTGAATACCAAGAAACTTTATCTTGATAATTAACTTAGAAACAAAAAGATTCTGTTTTAAAACTAATTTAATAATATAAATAGTAGCAAAACTTT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCTAACATAGGATGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 7 25345-25505 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000010.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 25345 30 100.0 37 .............................. ATGGGATTAAATTTAATATTCTTGAAACTCATTTTTA 25412 30 100.0 34 .............................. TTAAGTAACTCTGCTAATTGTTGAATAACGTCCT 25476 30 86.7 0 ...............GA...........GC | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 95.6 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AATTGCAGTGGTTGAACCCTAACATAGGATGTATTTAAGGTTCTATATTTATATTTTAAAGTTTATTCTCCTTTATGTTGAACCCTAACATAGGATGTATTTAAGGACTTATCTACAAAGCCACTATCTTCTAATGTACTGGTTGAACCCTAACATAGGATGTATTTAAGCAGAGAACCCAAATCTATGATTTGTTGTGAATCGCTTACTCTTCCAGTACTCCTTCGACAAAGAGAGAAGGAGTTTCATTTTCTAATCAACTCTCAATAACCAAAACCTCCTACTGGAATATAACTCTAAAAACCTTCAATTTAGCATTATATTTTTCCAACCGTCACTTAAACAAAACATCCTCTAAGTCATTGAAAATACAAGGTTTAAATGGTGTTTCTTCTTAACTTTTGAAAAAACACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAATTAGAGAATGGCTTAACTACAGTG # Right flank : CAGAGAACCAAGATTTAAAATCTTGTGTGAATCGCTTACTCTTCCAGTACTCCTTCGACAAAGAGAGAAGGAGTTTCATTTTCTAATCAACTCTCAATAACCAAAACCTCCTACTGGAATATAACTCTAAAAACCTTCAATTTAGCATTATATTTTTCCAACCTCCAATTAAACAAGATACCCCATAAGTCATTGAAAATACAAGGTTTAAAGGGTATTTTTTCTTAACTTTTGAAAAAATGCAAATCGGTTGGAAAAATTTCAGAGAAACCCTTTATTTTCAGTAGGTTAAAGGCTATAATGAAAATAAGGAATGGCTTAATTGCAGTGGTTGAACCCTAACATAGGATGTATTTAAGGTTCTATATTTATATTTTAAAGTTTATTCTCCTTTATGTTGAACCCTAACATAGGATGTATTTAAGGACTTATCTACAAAGCCACTATCTTCTAATGTACTGGTTGAACCCTAACATAGGATGTATTTAAGCAGAGAACCC # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 8 26325-27006 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000010.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 26325 30 100.0 37 .............................. CAATATAATATTACCTGGGGGCAATTCCTTCATGACA 26392 30 100.0 36 .............................. TAGCGTGTCTAAGTCTCTTAGGCTCCTTTGTCTGTT 26458 30 100.0 36 .............................. AGTAAACTAGGTATGTTTGTTGTATCTTTGTATAGA 26524 30 100.0 35 .............................. TTTATTTCTAAGCAAGCTTGGTATTCTAAGTAAGC 26589 30 100.0 34 .............................. ATTTATTATTTCCTATAAGGACTTAGACGGCAAA 26653 30 100.0 37 .............................. ATAGGATTAATTTTAACAAGTGTACAAACCTAGATTA 26720 30 100.0 34 .............................. TTATATTTTGTTAATAAAACGACTCCAATTATAA 26784 30 100.0 35 .............................. GGTGTTATTACGCTTATGCCTGCAAACTGATTCAT 26849 30 93.3 34 ...T............A............. TTTAAGGTTTTGCTATTTGTTTTTACTTGTTTGC 26913 30 96.7 34 ................A............. AGCTCCAGAGCAACCACTTTGTATCTTATCCCCG 26977 30 93.3 0 ................A...A......... | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 98.5 35 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AATTGCAGTGGTTGAACCCTAACATAGGATGTATTTAAGGTTCTATATTTATATTTTAAAGTTTATTCTCCTTTATGTTGAACCCTAACATAGGATGTATTTAAGGACTTATCTACAAAGCCACTATCTTCTAATGTACTGGTTGAACCCTAACATAGGATGTATTTAAGCAGAGAACCCAAATCTATGATTTGTTGTGAATCGCTTACTCTTCCAGTACTCCTTCGACAAAGAGAGAAGGAGTTTCATTTTCTAATCAACTCTCAATAACCAAAACCTCCTACTGGAATATAACTCTAAAAACCTTCAATTTAGCATTATATTTTTCCAACCGTCACTTAAACAAAACATCCTCTAAGTCATTGAAAATACAAGGTTTAAATGGTGTTTCTTCTTAACTTTTGAAAAAACACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAAATAAGGAATGGCTTAACTACAGTG # Right flank : TGGTGTTTCGCCACCATTAAGGGCGACCGATAATAGAGTTGAATCGCTTACTCTTCTAGTACTCCTTCGACAAAGTGAGAAGGCGTTTCATTTTATAATCAACTCTCCATAACCAAAACCTCCTACTGCAATATAACTCTAAAAACCTTTAATTTAGCATTATATTTTTCCAACCGTCACTTAAACAAAAACTGATTTAAACCATTGATACTACAGGATTTAAACTGTATCTTCTATCAAATTTTCTAAAAGCACAAATCGGTTGGAAAAATTTTGAACAAACCCTTTATTTTCAACAGGTTAAAGTATATAATGAGATTAGAGAATGGCTTAACTACAGTGGTTGAACCCTAACATAGGATGTATTTAAATTTCACCTTAAATACTTTACCATCCATAGATCTACGTTGAACCCTAACATAGGATGTATTTAAATTAGTCTGTAAAACCATCAAAGGTTTTGGCATCTCTTAGTTGAACCCTAACATAGGATGTATTTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 9 27348-27706 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKTN010000010.1 Clostridium amazonitimonense isolate MGYG-HGUT-01477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 27348 31 100.0 33 ............................... TCACCTTAAATACTTTACCATCCATAGATCTAC 27412 31 100.0 36 ............................... AGTCTGTAAAACCATCAAAGGTTTTGGCATCTCTTA 27479 31 100.0 33 ............................... ATATAAATACTTTTCGAAGCCATTTAGTAACTT 27543 31 100.0 36 ............................... GGCTAAATGGAAATATAAAGACTGAGTTGAAAGTGG 27610 31 100.0 35 ............................... AATATAAATTTAAATCACATCTTTCTTATAAACTT 27676 31 87.1 0 ........T......GA.............A | ========== ====== ====== ====== =============================== ==================================== ================== 6 31 97.9 35 GTTGAACCCTAACATAGGATGTATTTAAATT # Left flank : TGTTTAACCTTAACATAAGATGTATTTAAATTTTAAGGTTTTGCTATTTGTTTTTACTTGTTTGCGTTGAACCTTAACATAAGATGTATTTAAATAGCTCCAGAGCAACCACTTTGTATCTTATCCCCGGTTGAACCTTAACATAAGATATATTTAAATGGTGTTTCGCCACCATTAAGGGCGACCGATAATAGAGTTGAATCGCTTACTCTTCTAGTACTCCTTCGACAAAGTGAGAAGGCGTTTCATTTTATAATCAACTCTCCATAACCAAAACCTCCTACTGCAATATAACTCTAAAAACCTTTAATTTAGCATTATATTTTTCCAACCGTCACTTAAACAAAAACTGATTTAAACCATTGATACTACAGGATTTAAACTGTATCTTCTATCAAATTTTCTAAAAGCACAAATCGGTTGGAAAAATTTTGAACAAACCCTTTATTTTCAACAGGTTAAAGTATATAATGAGATTAGAGAATGGCTTAACTACAGTG # Right flank : ACTTGGAAAATTATAGATTAACTGGATTATATACGTTCAATCCTAGCACAAGTGACTTAGATTTTCTTTAGAACTGCTAATATTACTAGCTTTAAGAGTAATTATAGTATTCTAAATACTATAACAACACAAATTTATATAAAAATATGTGTTTATTTTTATATAAATTTTGATATAATAATATTAAGGAAACTTCACAACCAAGCTGAGGAGTTCATAATTTTAAAAAAGTTTATAATAGTCCTATAATAAGAAAAGCTTAGTGCGTCAACACTAAGCAATCCTTAGAACATTTATTTTGTTTTAGGGCTATTGGATTTTAACTATATTATTTGCTTAGTTAAGTAGAGAGAAGCACTAATCTTTGCGGGATGGGTGCTTTTTCTCTTTGCCATCAACTTCTATGTGAATACCAAGAAACTTTATCTTGATAATTAACTTAGAAACAAAAAGATTCTGTTTTAAAACTAATTTAATAATATAAATAGTAGCAAAACTTT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCTAACATAGGATGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //