Array 1 50551-49743 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUJY01000022.1 Photorhabdus khanii subsp. guanajuatensis strain MEX20-17 scaffold_0022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 50550 28 100.0 32 ............................ AAGTGATACTGCTGTTGATATAGACAATGAAT 50490 28 100.0 32 ............................ GACAACATCATTGAGAAATCCGCTTCAACATC 50430 28 100.0 32 ............................ AAAGGCAAGATTAAAGGTGTTTGCGCTGGGTT 50370 28 100.0 32 ............................ TCCTGATGCTCTTCCGGTGCCTGGTTCGTCTA 50310 28 100.0 32 ............................ ACAAACACCTTCTTGCGGGGATTTAATGTTGT 50250 28 100.0 32 ............................ ATTAAACAGTCGTTATACATATCTGAATCGTA 50190 28 100.0 32 ............................ CATTGCCCCGCAGTACATGGCGGGGCAATATC 50130 28 100.0 32 ............................ AGTGACCAGACGTTAAAAATCCATAGCGACAT 50070 28 100.0 32 ............................ GTACACCGTATTGCTAGATCAGACTGCGACCA 50010 28 100.0 32 ............................ TGATTAGCGTCGAAAGATTTCGATTTTTTATT 49950 28 100.0 32 ............................ AGAATACTTCCTTGTGACTTGTTATTGTTACT 49890 28 100.0 32 ............................ ATAAATCAATTAGGGGAAGTAAACAGAGATGA 49830 28 100.0 32 ............................ TGATATTGTTCTGCGACACTATCCATTGATGG 49770 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGCGTCAGCAGGGTATGCATCGGATTATGGCTAACTATATGCCTGATAATCATCGTAGTGGTAAATTGTTGGAACGATTGGGTTTTGAGCGTGAAGGATATGCAAAGAAATATCTGATGATAAATGGAATTTGGCAGGATCATGTATTAACCGCACTGACAGATGAAAAATGGAATGGAAAAAGCTGATGATCAGATTGTATTGCCAGATAAACCAGGAACTGCCTAGTTACAAAGTTATAGCGGAACTTAAATTACAGTCTCGTCGTAAGCCCCATCATGGGGCTTTTGCTCATTAATGAACAAACAGATGTAGAGAGAAGGAGGGAAATGTAACTTGAAAGATGGTGTTTCCTCATACCTTATTTTTGACCCTTTTTTATCAGCTAATTATAACTTATTGATTTATTTAAGAGATTAGCATCTGTTTAAAAAAAGGGTTTTTCTCCTTTTTGTCACTTTGCTCTTTAATAATCAAGAGATTAAAGTTAATATTCAACT # Right flank : TAGAAATATCGATTTATAATACCCTTTTGACGCAAATGGTATTCTCTGACAGACTGCAATGCATAGGAGCTATCTATATAGCAGACTTATCAACGGAGGCAACCATGAGTCATACCCGTTACGAAACTGATGTGGTCGCGTGGGCGAATGAGCAAGCAGCATTATTGCGTGCAGGTAAATTCTCTGAGATCGATATAGTTAATATTGCCGAGGAGATTGAGGACGTGGGCAAGAGTGAAAAACGTGAACTGGCAAATCGTATGGCGGTTTTGTTGGCCCATCTTCTGAAATGGCAATTCCAGCCTGGCCGTCGTGGTTCAAGCTGGCAACGAACGATCAGGGAACAGAGAAAAGCACTGGAATTGCATATAAAAGAGACACCTAGCCTGAAAAGTACCATTGCTGATGAAAACTGGTTTGCTAAAGTTTGGGCTGATGCCGTTTCTTCCGCTGCCGACGAAACAGGGCTGGATATGTTCCCGGATGAATGTATCTGGAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 55328-54880 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUJY01000013.1 Photorhabdus khanii subsp. guanajuatensis strain MEX20-17 scaffold_0013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 55327 28 100.0 32 ............................ ATTAATCACTCCAATAAGATAAAGATTCTTGT 55267 28 100.0 32 ............................ AAGATACAAATTGCCCTGGTGACGGCAAAAAT 55207 28 100.0 32 ............................ TGTCCAGATTCCACCGAAATGTTGAGTTGGAT 55147 28 100.0 32 ............................ CATAAAACTTCCGAACAATTCCGATGTAAACA 55087 28 100.0 32 ............................ TGTCCAGATTCCACCGAAATGTTGAGTTGGAT 55027 28 100.0 32 ............................ GGAAATCAACATTGGAGAAGCCCTCCCGGTTA 54967 28 100.0 32 ............................ TGCAAACGGGATAACTTCAATTTACATCCAGT 54907 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 8 28 97.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTAAACCAACGTAAGTGATTACCAACTAAAAAAGCCGTTTCGGAGAGATTTATTTCCGCAGCAATAGATAATAGCGCTTCATCTGGAAGCCAATTATCTAATATAACCACAGCGGCGGGATTGCCAGAAAAGGGGTGATCTGTAAATGCATCAACATGATAGATGGGTAGTGAAGTCATTTGATTCTCTCTCTTAAGCCGAGTTGATTATAGAAAGGGTGTCGGTATTCTGATTCAAAAATTAATCGCTAGTTTATAATACTCATATGTAATATATAAAAAAGAGTAAAATGTTTAGTTTTAAGATATTTAACCCGTTTACCGAAATGTTGAGTATCGTTATGTTAACTAGAGATTGGATGCTATTTTTGCCCCTTTTTTATCAGCTAATTATAACTTATTGATTTATTTAAGAGATTAACATCTGTTTAAAAAAAGGGTTTTTCTCCTTTTTGTCACTTTGCTCTTTAATAATCAAGAGATTAAAGTTAGTATTCAACA # Right flank : TCAATTGAGTGCGCTATAAAGAAAGAAGAATCTTGCTTCCTTGCGATATGGGTTATTTCTTATGCCTTTGAGCATACTCTTCACTGTTAACCCATTGATGGTCTTTCTCCCAGGTAAATAGCCACTTGCGGGTTGGTCCTGCCATGACATTGAGATAGTAGTTGTTATAACCAGCAATGGTTGCCACTGGGTGATAGCCCTTGGGAACCATTACCACATCTTTGTTATAAACCGCCATTGATTCATCCAGTGAACAGTCATCGGTATAGACTCGTTGCATACAAAATCCCTGCGATGGGTTCAGGCGATGGTAATAGGTTTCTTCCAGATAGGTTTCCTGTGGTTCATTGTCCGTATCGTGTTTGTGGCTGGGGTAGGAACTGGTGCAGCCTTCATCGGTGAAGACTTCGACCACTAATAAGCTATCAGCAGGTTTGTTGTCCGGCAGGATATTGTGAACATAGCGCTGGTTGCAGCCGCTCCCGCGTTTTTCTGCGTCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 58960-58752 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUJY01000013.1 Photorhabdus khanii subsp. guanajuatensis strain MEX20-17 scaffold_0013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 58959 28 100.0 32 ............................ TAAATCTCTCCGAAACGGCTTTTTTAGTTGGT 58899 28 100.0 32 ............................ GGCGGGAGACTGGATAAGTTTTGAACCTGTAG 58839 28 100.0 32 ............................ AGTATCCATCTTTTCTAGAATATGATTCAATT 58779 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGTCGCACAGGCAGCTTAGAAA # Left flank : AGCGTTGAACGATTTACAGGCGTTACCTTGGTTAAAAGGACTCAGGGACTATACTGAAGTGGTTGATATCCAACCGGTGCCTAAAAACACGCAGTATCGTTGTGTTAGCCGGGTGCAGGTCAATAGTAGCGTAGAGCGGCTTCGTCGCCGTTCGGTTAAAAAGGGGTGGTTAACGGAGGAACAAGCCCGACAACGTATTCCAATAAGCAAAGAACAACGTACTGATTTACCGTTTCTGAACCTCAAAAGTCTGTCATCAGGACAAAGCTTTCCGTTGTTTGTTGAACAGGGACCAATAGAAGACAGACCAACGCCAGGAATTTTTAGCTCTTATGGATTAAGTGCATCAGCTACCATCCCCTGGTTTTGACCCTTTTTTAGCGGTTAATCATAACCTTTTGATTTATTTAAGAGATTAGCCGCTGCTTATAAAAAGGGTTTTTCTGCTTTTTTTAACTATGCTCTTTAATAATCAGTAGGTTAAAGCTAATATCTAACAT # Right flank : AGTAAGCGGAAGTAGGGCAATTAATTGCCTTTATCGAAGTCCATAAATCATTAACAGAGAGTTGAAAAGAAATCAGCACATAAAAATATTATCTGGATAGGTTGGTGTTTAAGTGTTTTCTCGTTGTTATTTTATGAAGAAAACCATAAAAATAACGCAATAAGAAAATGGGTAAAACGGTTAATTTGGCAGGATTTAAGCCATTCCTTTCTTATATCTTTATTGTGATTTAACGCTAAAACCAATTTATGTCGTTATTTTTCCACGCTATTTTCGCTTTCGGTTAATGCTTAAATATCGTCAAGCCGTTATAACCTTTATGGTTGATTAATTTACTGGACTTTTCACCCTTGTTGATGCAATAAGGCGTTATTAAACATCAGAGAAAACCAATTAACCGATAACATATTATCTGAAATTTTCGATGATGCGAAAACCCCTTTCATTTTTTAAATGGATTTGTCAGCAATCCCGATTATCACTGTGTAGTTATCATCAAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGTCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //