Array 1 303212-304337 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIIN01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 1771 1771_2_length_483277_cov_106.324, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 303212 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 303273 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 303334 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 303395 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 303456 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 303517 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 303578 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 303639 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 303700 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 303761 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 303822 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 303883 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 303944 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 304005 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 304066 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 304127 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 304188 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 304249 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 304310 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 320596-322204 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIIN01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 1771 1771_2_length_483277_cov_106.324, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 320596 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 320657 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 320718 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 320779 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 320852 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 320913 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 320974 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 321035 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 321096 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 321157 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 321218 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 321279 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 321340 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 321401 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 321462 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 321523 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 321584 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 321645 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 321748 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 321809 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 321870 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 321931 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 321992 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 322053 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 322114 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 322175 29 96.6 0 A............................ | A [322201] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //