Array 1 338628-339851 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP010060.1 Enterococcus cecorum strain SA1 chromosome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
    338628	    32	 100.0	    34	................................	ACTCCTATCAAGCAAGAGTTAACACCGATTTTTA 	
    338694	    32	 100.0	    34	................................	TTCTGACATCACACTAACCACTCTAATCCTTGAC 	
    338760	    32	 100.0	    34	................................	AATGAAAAAGTGGAGGGGTTTGTATCCTACTTGA 	
    338826	    32	 100.0	    34	................................	ATACTAGAATGAAGGTATTCTCTAATCGTATTAG 	
    338892	    32	 100.0	    34	................................	CAAACATCCTTTCTCCTGCTTACCCGGCAGTTCG 	
    338958	    32	 100.0	    34	................................	TTGACTTTCTCAGACGATGAATGAGAAGTACTAA 	
    339024	    32	 100.0	    34	................................	TATTAACATCAAGTGCTTTTAACATGTATTACCT 	
    339090	    32	 100.0	    34	................................	GCTAAAAATTGTTGGATTCGACAATGTAATTTTT 	
    339156	    32	 100.0	    34	................................	TCCCCAAGCTTTCCACGCTACAGCACCAATTGTA 	
    339222	    32	 100.0	    35	................................	TGAGAATCCTGAATTTACTACTTATTTTAGATTTA	
    339289	    32	 100.0	    35	................................	ATCATATCAGCATCAAAATATAATCGATAGCCATT	
    339356	    32	 100.0	    33	................................	ATAATAAAATTCCTCCTATTAAATAAAATTATT  	
    339421	    32	 100.0	    34	................................	AAGTTGGTAGCGTTGATGACTACCGTTTGACTAA 	
    339487	    32	 100.0	    35	................................	TCACTCATCGGTTACCACCTCGATGTCAGCAAAGT	
    339554	    32	 100.0	    35	................................	CAAATACGGTTGGTCTTGTTAAGATGCCGCCTTTT	
    339621	    32	 100.0	    35	................................	TAAAAAAGACGGCACATCCAAATGACTGTCTAAAT	
    339688	    32	 100.0	    35	................................	TTCAACATATTCTAATTCCATTCGTCGCTTAGCAA	
    339755	    32	  96.9	    33	.............C..................	TAGTGAAATACATACCAAAAAGTGCATTAAAGT  	
    339820	    32	  93.8	     0	A............C..................	|                                  	
==========	======	======	======	================================	===================================	==================
        19	    32	  99.5	    34	GTCTCACCTTACATAGGTGAGTGGATTGAAAT	                                   	       

# Left flank :   CAATTACTTGCAAAATCAATTCGTGGTGATATTTCAGGTTATCCCCCTTTTCTCATATAATTTGGTGATAACAATGATGGTATTAATAACATATGACGTAAATACAGAAGATAGACATGGAAGAAAGAGGTTGAGGAAAGTTGCAGAATTATGTGTTGATTATGGACAAAGAGTTCAAAATTCTGTTTTTGAGTGTTCTTTAGCCCCTGCTGAGTATGTTGAAATTAAAGAAAGACTATTAAAAATAATTGATGAAACAACGGATAGTATCAGATTTTATAATCTCGGGAAAAACTGGCAACATAGAGTTGAAAAAATAGGATTTGATAATTCGTATGATCCAGATAAAGATTTGTTAATTTTTTGAGTTGAGCGAACCTATAGTGAACAGAAAATCATATATAGGTTCGCCTTAAATAAATGATATTTATCTAGATTTTTATCAATTATCAAAATGGTTATCACTTATAATTATGTTATAAACTGCGCTATTTCGCGCA
# Right flank :  TAGTTTTACTGATACCACATCATTAAGAGTACAATTTGAGAATTATGTAGACCAACCTCCCCAAGCTAAGTGACTTTTGGGAGGTTGGTTTGGTTGGGTTATTCTGCTAGTTTGACGATTTGGGTGCCGTGGAGTTCGTGGATGCCAAGTTGGTGGGCGATTTCTTCGGCATTTTCGTAAGTGATTTGTCCGCCTGGTAAGATGGTGATGCGATCAGCTGCATAGTCAATCAATTCTTTTAAGCGTGGGAGAGTGTCTAAGATGGATTCACTCATTGGACCACCATGGGTAAGGATACGATGGACACCGTGATCAGCTAACCAGTCAATGGCTTCAAATTGGCGTTCGACGGGTATTTCGTCAAAGGCCATGTGGAAAGTAATCTGTAAACCTTCTGCGACTTCAATGAGTTCTTCCATCGCCTCTTCGTCAATCCAGTTACTTGGAGTCAGGCAACCAAAGACCACGCCATCGACACCAAGTTTTTTTGCTTCAATCAG

# Questionable array : NO	 Score: 9.23
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCACCTTACATAGGTGAGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:59.38%AT]
# 	Reference repeat match prediction:         F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 93% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.40,-2.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.78,0   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//