Array 1 117342-119114 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOPI01000003.1 Ligilactobacillus ruminis DSM 20403 = NBRC 102161 strain DSM 20403, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 117342 33 100.0 34 ................................. ATTCTAATCCTTGTCCTCATTGTCAACCGTGAGA 117409 33 100.0 33 ................................. AAGCAACAATAAAGCTCATGCAACAAGCAATGC 117475 33 100.0 34 ................................. AGACAGATTGCGAGTTTTTCTGCGTTAGGCACAC 117542 33 100.0 33 ................................. AGCATTGGGAACACGTGGTGCAATTGCAATTCC 117608 33 100.0 33 ................................. GTAGATGTTGCAAGTTATCAGAATGATGCGCTT 117674 33 100.0 33 ................................. GCAACTTGCATGACATCATTAATTGACGTCATA 117740 33 100.0 35 ................................. ACTAAAGTGAGTGCTGTCGGTTACATATTGTAATT 117808 33 100.0 33 ................................. TTTACTACTCTTTTATTATATAACGTCACAAGC 117874 33 100.0 32 ................................. AATATGGTACAAATCGTTCTGACTTCGCCAGT 117939 33 100.0 35 ................................. AATCCTAACCGCAACTTTTTCTATTTTAATGGTTA 118007 33 100.0 33 ................................. AATTTCCAAGCCGACAATTGATGAACTTAATCA 118073 33 100.0 36 ................................. CCCTTTTTCACCAGCTGGACCAACGTCACCTTGAGG 118142 33 100.0 34 ................................. GGCATTGTTTCTAACTTTAGTAAGTGTTGTTTGT 118209 33 100.0 33 ................................. TTAAAACAAGTTATGAAAATGAGTTGACATCAC 118275 33 100.0 33 ................................. AACGGTCAGACTGTTGCAAGTCATTCAGGTAAC 118341 33 100.0 34 ................................. GTTTAGAAAATACTTACACTCGCACTCACTATCT 118408 33 100.0 34 ................................. ATCAACTCCAAGTGTTGTCAGATCAACATTAAGT 118475 33 100.0 36 ................................. ATTACTGTATACACTTTGAACTTTTGACCTGCCAAT 118544 33 100.0 36 ................................. AGCCCTTGGAAAACGTGGGCATCAAGGAAGTGCAGG 118613 33 100.0 35 ................................. GTTGATCATTGACGACACTCAAAAGGATATTCCGG 118681 33 100.0 33 ................................. GTTTTAATAAGCTCCTCTAATTACAGTCGGACA 118747 33 100.0 33 ................................. ATATTCTTTGTTACCCATAACACCATTAATGAC 118813 33 100.0 35 ................................. TCGCTTGTCAACATAGCCACGGTCAATATCTTCTT 118881 33 100.0 35 ................................. ATATGATGAGAGCAAGAGATTGCTCAACAATATTG 118949 33 100.0 33 ................................. ACGAAAAACATCTCACGTTACATGATACTCAAA 119015 33 100.0 34 ................................. AGTAATAATTTTGTAAAAGAAAAAAGTTGCATGA 119082 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 27 33 100.0 34 GTCGCCCTCTGTATAGGGGGCGTGAGTTGAAAT # Left flank : GGATGAGTATCCACCTTTTTTCTGGAAGTAGGTGAAGTTAGTTATGCTTATTTTAATAGCATATGATGTTAGTACTGAAACATCGGCTGGTAGAAAACGACTAAGAAAGGTAGCAAAAGAGTGCGTTAATTACGGTCAAAGGGTTCAAAATTCTGTTTTTGAATGTCAATTAAATTCTACAGAATATCGACAAGTTAAGGCTACTTTAGAAGGTATTATAAATAAAGATGAAGATAGTTTGCGTTTCTATAATTTGGGTGATAAGTACAAAAACAAGATAGAACACATTGGAATTAAAGAAAGTTTTGATATCAAAGGTACGCTTATTTTATAACAAAATATTTGCGAATCAAAAGTGAACATATTTTTTCGAAGTATTCGCACCTTGTTTTTAATGATTGCCGAATAATATTCATAATATATTTCTTAATCTTCGGTTGTAAGGATTATAGTTATTTATTATGATGCGAAAAATTGGGCTATATTGCCTGTTTTTTGCT # Right flank : TAGCTGAATGTCATATCAATGATGTTATGAATAGTAGCAAGGTTGGAAAAAAATGTATTTTCAGCAAAAAAACCGGATGATTCGAAATTAGTTTGTGAACATCATCCGGTTTTTACTTATATATGAACCAACGTAAGTGTTTTTATAAACCTCAGATATACTTGATGTTTAAATCATATCAAGATATCAGAGGCTTAAACGCTTATTTCCGCTTACGATTAAAATCAAATTGATGATACTAAATCTGTAAATGTTATCTGAATGTGTCCGTCACAGAATGTATGAAGCATAAAAATTAAGTCATATCAATAGAATACCGAACAAATCATCCGCAAGTTGACCGACTTTGTCCGGCATTAATTTAGTTTGAAAATAGAACGGAACTTTCCAGACCTCTCTTTCTTATGTTCTACCATTATCCTCATCCCCCAAACGCCCCCTCAAATCCTTCCCGACTGACGAACCCGTAGGATTCAAGCGTCGTCTTGTCGCTTGAAAGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCTGTATAGGGGGCGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 136084-135897 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOPI01000003.1 Ligilactobacillus ruminis DSM 20403 = NBRC 102161 strain DSM 20403, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 136083 37 78.4 38 T..A.CAC.T.TT........................ GGTATCATATACCATACCAACGCCGGAAGAAACAATCG 136008 37 100.0 38 ..................................... CGGATCGTACATGATGAATAATGGAGGCGCAAGAAAAT 135933 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 92.8 38 AGTTTTCGTCTCCTTCACTCGGAGATAGGTAATTATC # Left flank : TCGGTCTTACCGCAAACGAGATAGATTTTCATATTATTTATATTTGAAAACATTTTGATCACGATACCAAAGATAGTTGTTCAAATTTTTGAGAATCTCTCTTAAAGCTCCATTGTAAATTCGAATTTCAACATCTTCCGTAATAATTTTCGCAGCCATTTCCCTAACTGGACGGTATGTTTCTTTAGGGCTTCGGTCAACAAGGTTGACTCCCGCGACGTCATCCAATTTCATATTTAAACCTCCGATTATACTTGATGTTTAAAGCATGCCAAGATATCGGAGGTTTATGAGGAACGCTTATTTAAAGACCGCTTACGATGGGGCGAATATCAGTATCCTCTTTTTATATACGGAAAACGCACCTGTCGGATTCAAGTGCGTTTAGCATTGACGAACATATTGACTGCGTCTCATCTTTTCATCTTGGTTGTAGCACGAAAAACTCTGCTATACAAAAGCTTGCTTTAAATAACAGAATTATCCCGTATTTTTTACAT # Right flank : AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTTCGTCTCCTTCACTCGGAGATAGGTAATTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //