Array 1 4825-1794 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKGB01000019.1 Lacticaseibacillus paracasei strain FAM22278 FAM22278_scaffold_0019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 4824 32 100.0 34 ................................ GTTTTGGGCTAAACAGGAGGATCCATCATGGCAG 4758 32 100.0 33 ................................ TCTTTAGCAGTTGCTTGACGGCCATTGCTTGAA 4693 32 100.0 34 ................................ ATCAAGAGAATCACCTTCGATACTTGTATCGCCG 4627 32 100.0 36 ................................ AATATATACATTATGACACATGCTTGCTACCATATG 4559 32 100.0 35 ................................ ACATCATCAACCGCACCAAGATCAGCCGCAGCGCT 4492 32 100.0 33 ................................ ACGTTCCGCGACAACTTGCCAACAGACGACATC 4427 32 100.0 34 ................................ TTCTGCCATGATGGATCCTCCTGTTTAGCCCAAA 4361 32 100.0 34 ................................ ATTGCCCTTGTTTTCAATCAACTTGTAAGTATAA 4295 32 100.0 37 ................................ TACCAACAAGGAATGCTGACACAGCAGATTGCTGAGG 4226 32 100.0 34 ................................ ACTGTGCATGATTATAAGGTGCCAGAAACGCTTA 4160 32 100.0 35 ................................ ACTTTTAGCTCCGCTTCTTAGAATCATGACTAGGC 4093 32 100.0 36 ................................ TTGTCCGTCAATGCTTTCCCGTATTTTTCGGTCAAG 4025 32 100.0 33 ................................ CCAATGATTGATATTTTAAGTAGAGGCAGCGAA 3960 32 100.0 35 ................................ TCGGGCAAAACAGGGTCACTAACCATATAGTAACC 3893 32 100.0 34 ................................ ATTGGAAGAGGTTCTTGAACAAGGCTACCTTAAG 3827 32 100.0 33 ................................ AATTCCGAATGCATTTGATAGCCAAACTGAATT 3762 32 100.0 33 ................................ CATATGGTAAAAATACATGCTTGGCCGGTAGTC 3697 32 100.0 35 ................................ ACGAATGTCTTGTTGATTGTCCATTTGACACCATC 3630 32 100.0 36 ................................ GGGTCACGGCGGTGAATATGCCGACAACGAGTTCCT 3562 32 100.0 35 ................................ ATGTTAATCAAGACGATGTTGTGACTGATTGCGTT 3495 32 100.0 35 ................................ TAACAGCCTATTTGACGGCCACACCAACGTTAACT 3428 32 100.0 35 ................................ ATTTAAAAATTTTTGAAAATGTAATCGGATATGCG 3361 32 100.0 33 ................................ TCATCTTGCTTGTTGCTGTTCCAAAGAAAGCCA 3296 32 100.0 34 ................................ TTTTCGTACCTGCTCTCGGTACTAGTACGATCTT 3230 32 100.0 35 ................................ TTGACTATGTTTCAGTGCACAAAAAAGATGTTACT 3163 32 100.0 34 ................................ ATCAAACATGTTTTCGATGTATGCCTTGTACTCA 3097 32 100.0 35 ................................ TGAAAGTGGGATAGCACCGCGATACGTAGCGACTG 3030 32 100.0 36 ................................ CTCCTGTTTAGCCCAAAACGAATAGACATGCTTGAC 2962 32 100.0 34 ................................ TTGCACACTTCGCGCCAGTCGGGTTCCGCGTGAC 2896 32 100.0 36 ................................ TGCTTCCAAATCCTTAATCTGATCGTTAATAGCGTC 2828 32 100.0 35 ................................ TCAATAAAACATCAGCGTTCGTCGTAAAGGATAAT 2761 32 100.0 33 ................................ TCCTCGCAACCGTGCCATGATCCTTTCCCAGCG 2696 32 100.0 34 ................................ AAGCTCAACGAATGCCATCTTCAGTCACCTCACA 2630 32 100.0 33 ................................ TGAAAAACAGAAGTATCCAGTAAAGGAGAAGGC 2565 32 100.0 33 ................................ AGGTACTAGCAATTGCGGTTGTCATCGCACCGA 2500 32 100.0 34 ................................ CGCTAGACCCTGAAGACGCCAAGCGCTACATCAG 2434 32 100.0 37 ................................ CAGTAATTGTGGCATGGACTACGAAGAAAATTCTAGC 2365 32 100.0 37 ................................ AAAACTGAAAATACTGCAACATTGAACCGACTTGAGA 2296 32 100.0 36 ................................ ATCAACCGATTGGATCACAAAATTGTGTTTAACATG 2228 32 100.0 34 ................................ CGTTAACTCATTTAACGACGTAGCTTTAGCTACT 2162 32 100.0 34 ................................ AGTGCAAACACCAACATTCGTACAGCCCCTAGCA 2096 32 100.0 40 ................................ CATGACGCCTCCGATTCTATTACTGACGGAACTGCAAAGG 2024 32 100.0 33 ................................ ACATTAGCATTGATTTTAAGGCGAGCAACCTGG 1959 32 100.0 35 ................................ ACTCACAGACATGGGACGATGTCATAGACGCTAAT 1892 32 100.0 35 ................................ ATGGTAAGTTTTACCTACTTCATACTGTTTATCTT 1825 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================== ================== 46 32 100.0 35 GTCGCACCTCACGTAGGTGCGTGAATTGAAAT # Left flank : GAAAAATTTAAACCTATCGATTCAAAAACTGTTCCGGTTTTAGTCCAGTGGCCTGAATGTCCTGAAAGTGGTCAACTAGTTGCAGAGGTTGAGGCTAGAAAGGACGACTTCGATCAGATTTCTGCACTAATGAAAAAGGCACAACAATTTGTAGTTCAAGTTTATATGGACGGTAGTCAGAAAACTTTGACTATGGGCAATGTCGTTGCCGACTATATTCCTGAGTTTGGATTGTGGATTGCTCGTGAGGGCTCATATAACGATGAGTTTGGTTTGGATCCAGATGGTGGCTCTAAGTTGGGCTTTGATATGTTATAGGGTAATATATAGTCGGGTGCGAATGTGTAGTTATCATCAAAACGTGGGAGACTCGCACCTTTATTTGGTAATTTAGTGTCCATTTATAATGGATTATGTTCTGATTTGCCTACAGGTATTAGTAAATGCCTTTATTAATTCTGCATGTAGTAGCGTTAGCCGCATTTTTACTATATTTTGCG # Right flank : TGGCCACTAGCGATAGTGGATTGAAGTCAATATTTGAGACAGGTTTTAAGAGACATTCAGAACCGCGTTTACCTTCCACAGCTCAAATAAATCATTAATCGTGATTAATAACTTATTTGAACCATGGAAAGCATTAAATCAGGCGGCCATTTGGCTCGTAAGTGTTGCGATTTCAACTTGTAAGGGGGTCTGGTAGTCCAGTGAACTATGAATTCTCTTCCTATTGTAGAAAGCATGAACATATTCAAAAAGGACAGCAGCGGCAGTTTCATAATTCTCAAAGACCGGCACTGGATAAACACATTCCTTTTTGAGGGAAGCGTGAAAGGATTCCATTGGCGCATTATCATACGGACAACCCTTACAGCTGTATGAGTGGCGGATATGTAGTTCAGTTAAACGTTGATTGTAATCATCGCTGGTGTACTGTGATCCTAAGTCTGTGTGGATAATCAGGTCCCCAGTAATGGTTCGATTTTTAACCGCGCTTTCCAGGGTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGTAGGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //