Array 1 100369-101495 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBLT010000014.1 Escherichia coli strain Pk8574 NODE_14_length_118442_cov_123.784210, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 100369 29 100.0 32 ............................. ATTTTATGTGCCGCGTTGAGGCGTGGGCGTTA 100430 29 100.0 32 ............................. CATAATGAAATTGGCCTCAAATGAGGCCAATT 100491 29 96.6 32 ............T................ GAACTTGATCTGATTTGTGAATTTATTCGATC 100552 29 100.0 32 ............................. GAGATTGCGACGCTCCGTCAGCGCATCACAGT 100613 29 100.0 32 ............................. TGGGAACTGGCCCGCGCCATTGGTCAGGGGAA 100674 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 100735 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 100796 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 100857 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 100918 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 100979 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 101040 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 101101 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 101162 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 101223 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 101284 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 101345 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 101406 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 101467 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 87853-88722 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBLT010000010.1 Escherichia coli strain Pk8574 NODE_10_length_153580_cov_117.118121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 87853 28 100.0 32 ............................ AATTGTGTCGCGTCTATTGCTCCGGAGATAAT 87913 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 87973 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 88033 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 88093 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 88153 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 88213 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 88273 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 88333 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 88393 28 100.0 32 ............................ TCATTGGAATACATGAGTTGCGCCCATTTTGT 88453 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 88513 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 88573 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 88633 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 88693 28 85.7 0 ....................A...C.CT | T,C [88713,88717] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 94059-95107 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBLT010000010.1 Escherichia coli strain Pk8574 NODE_10_length_153580_cov_117.118121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 94059 28 100.0 32 ............................ AACGAGCAAAAACGCGCGTACCGGATTGCGGA 94119 28 100.0 32 ............................ ACCAGAATTAATAATCTTTTCATCGTCACGCC 94179 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 94239 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 94299 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 94359 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 94419 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 94479 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 94539 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 94599 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 94659 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 94720 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 94780 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 94840 28 100.0 32 ............................ AGTACGCTATTACGCTACCCTACCCAAAACAC 94900 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 94960 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 95020 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 95080 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 40370-39426 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBLT010000031.1 Escherichia coli strain Pk8574 NODE_31_length_49281_cov_118.757073, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40369 29 100.0 32 ............................. GGTGATTTTGACGTGTAAACCGGGCGGATTCT 40308 29 100.0 32 ............................. GCTACCCCACTGGCGCTTTTTCGCACTGAAAA 40247 29 100.0 32 ............................. TAAGAGAACCCGCCATACGGCGGGTATTTTCA 40186 29 100.0 32 ............................. GACCTGCCGTATCGGGTTTTTAATTTCTATGT 40125 29 100.0 32 ............................. GTAAAGAAACTGCCGACAAATCCCTGTTCGTT 40064 29 100.0 32 ............................. CCCGTCACCGACGCGCAGTGGCGCTACCGTGA 40003 29 100.0 32 ............................. CAATCACTGATTGAAAACGCGATTAATAGTGA 39942 29 100.0 32 ............................. ATTTGGCGGCACCAGATTTTGCGTCAGATGAC 39881 29 100.0 32 ............................. CCTACGAACAATTCCTCTGAACCGCCCGCACT 39820 29 100.0 32 ............................. GGATCTAACGCGCTGTCAAAATTCCGTGCTTT 39759 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 39698 29 96.6 32 A............................ CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 39637 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 39576 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 39515 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 39454 29 96.6 0 .A........................... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //