Array 1 54589-54142 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDH01000061.1 Pectobacterium carotovorum strain S1.15.11.2D contig_61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 54588 28 100.0 32 ............................ TGATGGCAGTCGAGAATTAGCATTATCATTCG 54528 28 100.0 32 ............................ TACGGGAAATCAGTTCTCAATGCCGCCTACAT 54468 28 100.0 32 ............................ ACTTGAGGAAATCGGAGAAAAGCGCATATCAT 54408 28 100.0 32 ............................ AGTGACTGATCCAGAATCAGACTCACGGTGAT 54348 28 100.0 32 ............................ AGTAATGCACAGATCGATTCAAGGAAAACCCC 54288 28 100.0 32 ............................ ATAAACCAGATTGGCTATTGCCGCCTGTCGGT 54228 28 100.0 32 ............................ TGGTGCTGTAGTTAATGAACTACCCGTTGAAA 54168 27 71.4 0 ...........TGC......-..C.GCG | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCTACGCTGGATCAAACGACCTGGCTGAAAGGATTGCGGGATTACACATTGGTTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTACGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGCATTCCCGACGCGGTGGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGGCAGATGTTCTTCGTGTTTGTGGAACATGGCCTGCTACAGGATGCTCCTATCGCCGGACGCTTTTCCTCCTACGGCCTAAGTGCAGAAGCCACCGTTCCTTGGTTCTGACCCTTTTTTGGCGACCAGCTGCAACCCATTGATTTTTAATTGCGGTTGGTCGCTCTAATAAAAAGGGTTTTTCGCGATAAAACGAATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAACGTAACA # Right flank : ATTATCGGGATGCGTCGCTGGCACGACGCATTTTGGAAAACTATTCCCCGTGGAGGGTGACAACCAGCGAGCGGCTACCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAAGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCCAGCAGGCTACCTTTCAGGTGCGCGGGCATGTCGTCACTACCTTCATATGTATGGCGGTAGTACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGATCGGCATTCTCGTTAATCGTTAACGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTGCAGTAACTTGTGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCCGCCCCCTGCTATCAGGCCTCGCGTGCCAGAATCGGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 63161-64029 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDH01000061.1 Pectobacterium carotovorum strain S1.15.11.2D contig_61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63161 28 100.0 32 ............................ TCGCGTCTCGCTACCCGTCAGGCGTGTTACCC 63221 28 100.0 32 ............................ GACTAACACGCCTATTCCCTCTGAGCTACCAA 63281 28 100.0 32 ............................ TTCCCTTGTTACACCAAAGTGCGCTCTTGGCT 63341 28 100.0 32 ............................ TTGCAGATTGTTCAGACCACTTACACCATCAT 63401 28 100.0 32 ............................ AGAGTTTCTCTACTTTCTCGCACAGAGTATGT 63461 28 100.0 32 ............................ ACCCAAACCCAGTCCTGCGCCATCCATACCGC 63521 28 100.0 33 ............................ ACTGACAATGCCCCAATATCCCCCGCGTTCAGC 63582 28 100.0 32 ............................ AGAAAATCATTGACGTTGCATCAGGAGGATAA 63642 28 100.0 32 ............................ TTATCGATGATCTGCCCCGCCGTCCCGCTTAC 63702 28 100.0 32 ............................ GAGAATTGAAAATAGCGCTGCCCATTCGGTTA 63762 28 100.0 32 ............................ GAGAACCAGAAACAACACTAAACCACGGCTTA 63822 28 100.0 32 ............................ TCCAGCCAGACCCGCGATCAAAACCTCACCAC 63882 28 100.0 32 ............................ CAGTTGAGGGTAAATTGCGGTATAGCCTCAAG 63942 28 100.0 32 ............................ ACTTGAGCGTGTCGTTAATGCCGTCCCATATC 64002 28 78.6 0 ...........C.C..........TCCC | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACAGAGGTGCCAGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTTGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGCTTAGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAAAAGCTGTGATGCCAGCGAAATAAATCGCAGGCTAATTATTTGATAAGAAAAAATATAATCTTTAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTAGCCAAAAACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTAAAAAAAAGGGTTTTTGCAGGGAAAATGGTAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACA # Right flank : CCAGTTTCAAGTGCCATTATCTGGCTATTATCGAGATAGCACTATCGGCAGAATTTGATGCGTTATCGTCTTTAAATAACGTATTTCTTTGTGGGGAATATAGATCCTAACCCGCATTTATTTCTCGCCAGTTCAGCCAGATTCGCATATCAAATTCCAGCTGGTGATAATTAGGGTCTATATGGCAGCAGAGTTGGTAGAAAGCCTTGTTGTGGTCTTTTTCTTTGAGGTGAGCGAGTTCGTGTACCACGATCATCCGCAGGAAATCTTCTGGCCCGTCACGAAATAGCGTCGCTATTCTGATTTCGTTATTGGACTTTAATTTTCCACCTTGTACACGCGCCACAAAGGTATTGGTTCCTAGCGTCCCTTTTATCGGGTTCTGTTTATTGTCGTAAAGCACCTTTGATATCGTCGGGGCGTTTTTCAGATAGCGCTGTTTCAGCTCGGCAACAAACTGATAGAGCGACTTATCACTCTGGATAGGATGACGGTCAGGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 68228-67419 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDH01000061.1 Pectobacterium carotovorum strain S1.15.11.2D contig_61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 68227 28 100.0 32 ............................ GTTCCCCGCTGCTGTAGCCCCGTCTGGTTGGC 68167 28 100.0 32 ............................ CACTGCCGTTCCCTGCTGCTGTCGCGCCATCC 68107 28 100.0 32 ............................ CCTTCATCGCCTGATAATCCGCACATCTTTAC 68047 28 100.0 32 ............................ GCAATTAGCCAGTACCTATCCCTCTGGTGTTT 67987 28 100.0 32 ............................ ATCCCCGCAATCAAAACCTCCCCACTGTTTGC 67927 28 100.0 32 ............................ ATGGCCACACCGCTGGCCAGCGACACGCGAAA 67867 28 100.0 32 ............................ GAACGGGCGCGGGGCTTTCGGGTCATGGTCTT 67807 28 100.0 32 ............................ TGGGTGATACCGTGATTGCCATTGGTGAACGG 67747 28 100.0 32 ............................ GATTGACCGCTGATATCTTCCAGGCTGGCACG 67687 28 100.0 32 ............................ ATGATGCGCTCGGTCAGTAGTTCGGTTAATTG 67627 28 100.0 32 ............................ AAGGACTAGCAGCACCGCTAGAAACCTGTCGT 67567 28 100.0 32 ............................ TCTTTGCCGTTTAGCGTAGTTTCCTGCGCGTT 67507 28 96.4 33 ...........C................ ACACGGTCACGAATAGTGATCCGAATGATTGAT 67446 28 82.1 0 .....T.....A.C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.5 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCGACTTACCGTTTATAATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGGTTGTATATCCATAGCATATGCAGATACCTGGCATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGTATCGTCGTAACTTATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAGGGTCTTTCGGGAAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : ATAAAACGCACCCAAAGTCAGGAATAATAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGCTTTCACCAAATGCTGGGGGAAGTGGACGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //