Array 1 155445-150414 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWKU01000009.1 Trueperella pyogenes strain SH03 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155444 29 100.0 32 ............................. AAGAATCACAAGGCCAACTCGGCGAACTCGCG 155383 29 96.6 32 ............................G GCTCAATGACTCACGTGGGTCAGGGACACATG 155322 29 96.6 32 ............................G GCACGATCTCCGCAATCGAAAACGGAGAACGC 155261 29 100.0 32 ............................. CAGGCCACGATCTATGCCGCATGGCTGCAAGA 155200 29 100.0 32 ............................. GCGGCGTAATCACATACTCATAAAGCTTGACC 155139 29 100.0 32 ............................. GAACACGGCAAATGGGCACACTGGGACGGCCA 155078 29 100.0 32 ............................. CAGCACGGCAACAGGAAACTTGCCCGGCGACC 155017 29 96.6 32 ............................G GAGGAGGCCAACCACGAATGAACCCCACCCCC 154956 29 96.6 32 ............................G GATGCCCGGGTAAGAAAAGACCCACCGCCACG 154895 29 96.6 32 ............................G CTTCTGCGGTGTGAGTATTGACGAGCTAATCC 154834 29 96.6 32 ............................G TTTGGTGACCTCGACGACGAGGCGGTGGATGG 154773 29 100.0 32 ............................. GCGCTATAGGCCTCGTAGGCGCCCAACGCATA 154712 29 96.6 32 ............................G GTAATCGACACGTTCGCATAACAACCCGAGTA 154651 29 100.0 32 ............................. GTGGCTCGCGAACCGGGTCCATGACGTGCGGC 154590 29 100.0 32 ............................. CTGGTCGGGATTACTCGGGTATACCTCGATTC 154529 29 100.0 32 ............................. AAGAACGCGCGCAAGCTGGCCGGTGCGCGCTG 154468 29 100.0 32 ............................. GACGCCGTGCTCGAAATTCGTGATCTGCCCCG 154407 29 100.0 32 ............................. GTTCCAACACCACCGCAAGGGCGACCCTGGGC 154346 29 96.6 32 ............................G CACATCACGGACAAGCGCGGAAACGTGATCGA 154285 29 96.6 32 ............................G TTACCTTTGCTGCCAGCGCGCGCTGCGAAAGC 154224 29 100.0 32 ............................. CCGGCGAGCGTGGTGAACCCGGCGAGCCGGGC 154163 29 100.0 32 ............................. ATCAGGCACACTCATTTAGAATTCCGTTCCCT 154102 29 96.6 32 ............................T GTCGCTGAAATGAAGTACCTCCAGTGACCTGG 154041 29 96.6 32 ............................G CGTGCCACGCTCGAAGTCGATGGCGCCCCAGG 153980 29 96.6 32 ............................G GGTGTATTCCCCGGCGGGGTATAGTCCGTCGG 153919 29 96.6 32 ............................T TTCGCGGTCGTCGAATACACTGACGGGCAGTC 153858 29 96.6 32 ............................T GTGACCGTGCCCACTGGTGCGTGGGCGTCCGG 153797 29 100.0 32 ............................. TTCCACGCCGAGCCGGTGCCAGGCCATGCCAC 153736 29 96.6 32 ............................G ACGAGGAAGAGGACGACGTCGAGGAGCCGGTC 153675 29 100.0 32 ............................. TGCCTAAGGGTGAACCCGGCGAGCGTGGTGAA 153614 29 100.0 32 ............................. ACAAAACCCCCGACACGAGCCGCGCCCATGCA 153553 29 96.6 32 ............................G CCCCGGCCAAAAGGTCAGAAAGGACCACGACA 153492 29 100.0 32 ............................. ATCATCACTGCAACAGTAAGTCCAACATAGAA 153431 29 96.6 32 ............................G GATTTCGGCGCGTGTAGAGACAGATTCTCTCC 153370 29 96.6 32 ............................G GTCATACTCCGGCACGCCGGCGTCCATGCATA 153309 29 100.0 32 ............................. GGTAAACGCGATTGGCCTTTAGACGATGTCGC 153248 29 96.6 32 ............................G TCGGGAGGCACGCAGTGTGTCCCCCGACTTAG 153187 29 100.0 32 ............................. ACGATGGGAGGGATCTGGGTGCGTGAATCTTG 153126 29 96.6 32 ............................G TCTTGGACCGCGTAAATGATGCCCGCGTAAGT 153065 29 100.0 32 ............................. TCGCCGGATACTCACCCAACACGCTACGCTCC 153004 29 96.6 32 ............................T CACCGAAAGCGGCGAATACGCCACCGGGGGAC 152943 29 96.6 32 ............................T GACCTCCACACGTCTCACAGGAGCTGCTCTAT 152882 29 100.0 32 ............................. TTCTTTTGTGGCTTTAGCATGCTGCCCACTGG 152821 29 96.6 32 ............................G CATCCACACCTTCCAAAACGCGTGGAGCCAAC 152760 29 93.1 32 ...........................AA CAGCGCCGCCCCCGGTGAGGGCGATACGTGAC 152699 29 100.0 32 ............................. TCGCCGCACTCCAAGGCGTCCGCCTCGCCGTC 152638 29 100.0 32 ............................. CTGCTTCCACCCTGCGGCCGCAACCTTGATCA 152577 29 100.0 32 ............................. CGCAACACCCCTTGTTTTTCACCGTCTGGGGC 152516 29 100.0 32 ............................. GCCGGGAGCTGCTCCGGCGGTGGCGCGCCCAT 152455 29 96.6 32 ............................T GAGCCGGAATCGGACATCAGCCAAAAAAGCGG 152394 29 100.0 32 ............................. TCGCTTCCGACATGCTCTCGCCCCGTGCACTG 152333 29 96.6 32 ............................G TTGACCCCTGCACAGCTTTACCGGTCGCAGCC 152272 29 100.0 32 ............................. CGGCGCGAATGGGGATAGGCGTGAGCCTGTGG 152211 29 100.0 32 ............................. CTGCCAACGCAGTCGTCTGAAACCATTATCGA 152150 29 96.6 32 ............................G GGCACGATCCACCTGCGCAGAGCTAAGAAGGC 152089 29 100.0 32 ............................. TGGACCTCGATCGGCGGGACCCCGACCGGCAT 152028 29 100.0 32 ............................. ACAAAACCCCCGACACGAGCCGCGCCCATGCA 151967 29 100.0 32 ............................. CCCAACTGACATCGGATCCGGACGGTAAAGAG 151906 29 96.6 32 ......................C...... GGGCTGGTCTCCACCGGCCACGTAGGCGTCGA 151845 29 96.6 32 ............................G ACCGCAAGAGAAACATCCAGGCTTGAAATAGA 151784 29 100.0 32 ............................. TCCACGCCGAGCACCCAAGCTGGGAAATCCGC 151723 29 96.6 32 ............................T TTTGGTTGCCTTGCATGAGTGCATCATGCATA 151662 29 100.0 32 ............................. TGTGCATCCACTAGGCGCCGCGCCGTAGCCGA 151601 29 100.0 32 ............................. TCCACGCCGAGCACCCAAGCTGGGAAATCCGC 151540 29 100.0 32 ............................. GATACGATGTGACGGTGTGGGTGGTGGACATA 151479 29 100.0 32 ............................. TGTGCATCCACTAGGCGCCGCGCCGTAGCCTC 151418 29 96.6 32 ............................G TTTCTGCGAGTTCCCGCCCCGAACACAAGAGT 151357 29 96.6 32 ............................G CAGACAGGGCACGCGCCTCGGTGCGTTACACA 151296 29 100.0 32 ............................. CGGCTAGGCAGCTGACCAAAAACGTCCAGGAA 151235 29 100.0 32 ............................. CCACAGCTTACTAATCACGTTCTCGTGTACTA 151174 29 96.6 32 ............................G GATTTCGCGGCTAATGCCGGAGGGGGTCACTA 151113 29 100.0 32 ............................. CGGCTAGGCAGCTGACCAAAAACGTCCAGGAA 151052 29 100.0 32 ............................. AAAGTGGGAACGTGTCCTTCATGGTGGGGCTA 150991 29 100.0 32 ............................. CCACAGCTTACTAATCACGTTCTCGTGTACTG 150930 29 100.0 32 ............................. AAGGCGACCGGGTTTGTGGTCCCGGAAGGCGA 150869 29 100.0 32 ............................. ATTCCACCGACCCTCGCGTTAAGCCTACCACG 150808 29 93.1 32 .....................G......G TGGGCAGACACCAGCATTTCTCGATAGCGAGG 150747 29 100.0 32 ............................. GGGTACGATTTCCTCGGATATGGCGGAAATTG 150686 29 96.6 32 ...........................T. CAACAACCCTTCGATTACAGTGAAAGCGATGG 150625 29 96.6 32 ............................G GCTGACCAGAGCACCGATGATTATGTGGAACT 150564 29 100.0 32 ............................. AAAGTGGGAACGTGTCCTTCATGGTGGGGCTA 150503 29 96.6 31 ............................G GGTGGTAAATCGTTCAGTCCCGGGATGGGGA 150443 29 93.1 0 ..........................T.A | C [150418] ========== ====== ====== ====== ============================= ================================ ================== 83 29 98.3 32 GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : CCGCGGTACCTGCAGGTCTGCGGGGCGACCTCACGAAATGGCTTATGGAGATCGCACCAGGAGTGTTTGTGGGGACTCCAAGCGCGCGGATACGGGAGCAGATCTGGGCACGCACCGTCGCACTTTGTAAAGACGGCCGGGCAATCATGGTTTGCTCCGCGGATAACGAGCAGGGAATGACGTTTCGAACCCATCGACACGATTGGGAACCAGCAGACTTTGATGGTTTGACCTTAATGATTCGGCCAGATGGTGGACAGAATTCTCAGAACAATCAGCGAAGAACGGGATGGTCGGACGCTAGGCATCTACGCAAAAAGTATTGATAACGACTGAACTGTTTGGGTATCCAGATTTTTGATAGTTCGAGAATTGTGGATTACGCGCGATGGTAGTGGATAGAGTGGATCCTGAGATATCCATTGGGCCATCGTCAGGTAGGGCGCAATAAGTTAAATGTATAATCGAAGTGCTGGCGGCAGAAATGCTGGTCAGCAACA # Right flank : GTGACGGTTGGAAAGTAGCCCAGTAGTTGCGTCGTTGATTTTGAGAATCACGCGCAAAATGCGAAACTGCACTTCTTCTAAAACCTGCAAACTCGTACACGGCGTCGCGTCCTCCTCGGGTGCCCTCACAATTGTCAGGTGCCAAATCAAGTAGGCCATTGTCAGCTACTAGGAATCTGACAAACGAGAATCAATATCCATATGACGCTGGAGAATTCGTACGACTACCACGGCGTCGTCTTCGCACCGATAGAAGATAACGTGTTGACTGCCTGTCAGGCTGCGGCACGCTGATTCAAGTTCTTTGCGGAGGCGGTCGCGCAGAGGAAAATCTGTCAAGCTCTCTAAGCTAGTCTGGAGTTCTCGCAGATACAGCTCCGCCTGGCAGGGTCCCCATTTTTCTTCCGTATGATCCCTGATATTTGACAGGTCAACCTTGGCTAGTGGTGAGAAAGCGAGTTTGACTGGTGCTGCTTTTCTATGATGAATTAGTCAAAGTC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //