Array 1 189920-188547 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTFM01000027.1 Pseudomonas aeruginosa isolate RW130, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 189919 29 89.7 32 ..........................GTC ATGAGTGGAGGAAGGCCTAGCGATTACACCGT 189858 29 93.1 32 ..........................G.C TGGATTCTCGCAGAGGGCTTTATCAAGGAGGT 189797 29 100.0 33 ............................. TCGAACAGATCGGCTACAGCGATATCGCGGCCA 189735 29 100.0 32 ............................. CGGTTACCGCTGGCATCGAAAGCGTCGCCTTC 189674 29 100.0 32 ............................. AGGAACAACGCCCGCCAGCCTGCGACCATTCC 189613 29 100.0 32 ............................. CCGCCACGTCTGCCTGCAAATCTTCATCAGCC 189552 29 100.0 32 ............................. GTAGGCGCGCACGCCTTCCTGCACGTCCTGGA 189491 29 100.0 32 ............................. GATCAGTGTCTGTTGACACTACCTCGACCCTT 189430 29 100.0 32 ............................. CTTCCATCAGTTGCTCGTTGGAGTACTTGCCG 189369 29 100.0 32 ............................. ATCACGTTTCCGACCGGGGGAAGCTGTCCAGT 189308 29 100.0 32 ............................. TCGGCCTGTACGACGTTGACGGCCAGTTGCTC 189247 29 100.0 32 ............................. CGGCTCATTGCGTTCGGGTGGACCGTCGAACA 189186 29 100.0 33 ............................. GCGCTGGGTAACCTACGCGACAACAGCGAGTTC 189124 29 100.0 32 ............................. AGTCTTCGTTTGCTGAGATCAAGGCGGCGATC 189063 29 96.6 32 ..............T.............. GAGTTCGAAAACGGCCATCACACATTCCTCCG 189002 29 100.0 32 ............................. GTCAAGTACGCGAACCTCACGACCGGCGAGGT 188941 29 100.0 32 ............................. GCACTCCAGGGCGAACTGGACGGTATACGGCG 188880 29 96.6 32 ............C................ GTAGTCCAGTGGCATCGACAGTTCGGCCAGGT 188819 29 100.0 32 ............................. CCAGCGGCCTTGCACTTTGCCAGAGAGTTGTT 188758 29 100.0 32 ............................. GCGGCACGCCTGGACGTGCTCCAGGACATCCG 188697 29 100.0 32 ............................. TTCTCGTTCTACAACAGCACGAACGGCGGGGC 188636 29 96.6 32 ...........A................. CAGGTGATCTGCGAGCTGCCGGCGTAGCCGAA 188575 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : ACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTGGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGTCACAGGACGCAAGGGTGAGCTTCCTGGCCGTGGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGCTGTACGGTAAGTGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGTCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 200710-199095 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTFM01000027.1 Pseudomonas aeruginosa isolate RW130, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 200709 29 100.0 32 ............................. CTGATCCTCAACGACCGCACAGTTACTCAGTA 200648 29 100.0 32 ............................. AATCTCGCGGGACAGTGCCTCGTCATCTGCCA 200587 29 100.0 32 ............................. CCAGGTCGTCGGATGCGGGACGAACTGGCCGC 200526 29 100.0 32 ............................. CCGCTCTTGCTGCGGTAGAAGGGCATGAGAAA 200465 29 100.0 32 ............................. GAGTTGAAGGGCCTAGGGAATGGCAACGCCAG 200404 29 100.0 32 ............................. CTGATCGCCACTTACCAGAAGTCAGATGACGA 200343 29 100.0 32 ............................. TCAGAAAGCTCGCGCCAGTTCTGCTCCCAGGA 200282 29 100.0 32 ............................. GGCCTCTAGGCCGATTTATCCTGTTCACCAAG 200221 29 96.6 32 ............................C GATATTGTCCTCGTCTCCACCGCCATAAAGGA 200160 29 100.0 32 ............................. CCGAGCAGCAATGCCGCGACGGCGAGATCGTA 200099 29 100.0 32 ............................. CTGCCGAGCAGGGCCAACAGCAGCAAGCCCAA 200038 29 100.0 32 ............................. ATCGTCCTGGAGGACAAGGCCGAGTTGAAGAA 199977 29 100.0 32 ............................. GCTGGCGAACTGATTGGCATGACTTCTGCGGC 199916 29 100.0 32 ............................. TTCGGCGACCTCATCTGGTTCAACCGCTGGGA 199855 29 100.0 32 ............................. AATCTCTTCCTTGCCAAGAAGAGAGAGCTGAA 199794 29 100.0 32 ............................. ACCTTTGGCCGGAGATGCGGAGAGTCGTGGCA 199733 29 100.0 32 ............................. TTGTTCCGATGAAGAAGCGCGAGGACCGATAT 199672 29 100.0 32 ............................. AATCGCAAGCGCATGGTGACCGGTTATCGTGA 199611 29 100.0 32 ............................. CTGTAGGTGGTGACATCGTCGTACGGCGCGGA 199550 29 100.0 32 ............................. GTACTGCTCCCGAGCCTGCTGCCAACGGTAGT 199489 29 100.0 32 ............................. TATGCTTTCATAACGGCGTGTCTTCAGGAGAA 199428 29 100.0 32 ............................. CCGAAGCGCCGCAAAGTCGTGTTCAAAAGCCC 199367 29 100.0 32 ............................. GCGGCAGCCTCCCTGATCGCGTAGAAAACGCC 199306 29 100.0 32 ............................. CCGAGATGTGGCGCCGAAACGAGCGCGAGCGC 199245 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 199184 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 199123 28 79.3 0 A..........A..C.....-..A....T | C [199114] ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.7 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTAGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGTTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //