Array 1 1-234 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJYL01000014.1 Campylobacter coli strain BCW_5914 263, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... AAGCTTTAGACTTGCTAAAAGCTTGGAATA 67 36 100.0 30 .................................... CTTTTTTAATTATTTGAAAACGACATTATT 133 36 100.0 30 .................................... GGTGTTAGGGTATAAATGAAAGTTTGAGTT 199 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGCCTATTGTTAATTGTTTGTATGGTAAAAT # Left flank : | # Right flank : TAGACTTATCTCAAAAGCCTATTTTATCAATGTTTTTTCTTGTTTTTTAAGCAAAAACTTACGCATACCCTTTTTTCATTTTTTGTTTCTTTAACCTCTCAAAAAAAATTTGTGCCTCATTAAAACTTGAAAATACATTATTTTTTCTTCCTGTGCAACTTTTAAAACGCACATTTCCGTAAACTCTCTCAACCATATATTCCTCAAATAGAGTGGCAATAATTTCTATGCTATAATAGCGAATGTTTCCTTTCTCAGTTATTCTGTGCAACAAAACATTATTCATAAAAAAACCTAATTAAAAATTATTTATTTTATTCAAAAAATCATTTTTAAACATTTTTTCTATAGCAAGCTTAATCATTTGATTAATTTTCTCATTTTCTTTATTTGTATTAGAAATTTCATCTTTGTAAGTAGGAATCATCATTTCTATCATTTTTAATGTTTTTTCATCAAATAATACTCTTTTTGGAATTAATATTTCATTTTTTTGAATA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCCTATTGTTAATTGTTTGTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 175248-174751 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJYL01000052.1 Campylobacter coli strain BCW_5914 311, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 175247 36 100.0 30 .................................... AATTAAAACCACAGAAAGAAAGCTATCAAA 175181 36 100.0 30 .................................... AACAAAATCAATATGAACCCTTGAAGCTCT 175115 36 100.0 30 .................................... TTCACTATAGATCTGAAAGTATTCTTTTAT 175049 36 100.0 30 .................................... TCATAGTTTCTGCATTTATCAAAAGTGGTC 174983 36 100.0 29 .................................... GATTGTTGATTCTCTAAATTGCGTTACCA 174918 36 100.0 30 .................................... TTTTTCAACAAGTGGAGCATTAATCTAATG 174852 36 100.0 30 .................................... ATCCAAATGAAATGCAAATTTTTCATTAAA 174786 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.7 30 ATTTTACCATGTAAACAATTAATAATAGGCTAAAAC # Left flank : GTAAGAACTGATTTATTTGCAGATAAAGAAAATAAATTCCATGCAGTGTCTATTTATAAAGCAGATTTTTCTACAAAAAAACTTCCAAATAAAACCCCTGCAACTACATCAAATGGAGAAACCAAAGAAGGCATTGAAATGAATGAAAATTATAACTTTTGTATGTCATTGTATAAAAATACTCCAATTAGCGTAAAAATAAAGGGTATGAAAGAGCCTATCATTTGTTATTATCATGGTTTTAATACTTCAGGAAGTAAAATAACTTATAAAAAACACGACAACAATTATCACAACCTTAGTGAAGATGAAATGGTTGTTTTTAGAAAAAATGATAAAGAATCTATAGTGGTAGGAAAAATACTTGAAATTAAAAAATACAGTATAAGTCCTTCAGGTGAATTAAGCTTAATTGAAAACGAAGAGCGTAAATGGTTTTAGATATTTTTGCTCAAAAAATAAGAAAAAACATTGATAAAATAGGCTTTTGAGATAAGTCT # Right flank : TAGCTTTTAAATATTTAAATTCATAAGAAAATATTTCTTAATCTACTTTCATCGCAACTTTTCAAAAAATCATAGATTTTCTTTCTATAAGTTGATTTATCCTTTTTCCAAGTATTTAGCGTTGGCAATGGAATTGTTGTAATTTTGGCAATTTTAGAATCACTTAAACCTGTATTAGAAGAATTAATAGAATTTGAAAATATTTCTTTTAATTCTTCTTGATTAGTGTTTTTTAAAAAAAGATATATTTTTCCCCTCCAATTGTCTTTTTTTTGTTTCCAGTCTCTAATAGTGAAATAAGGAATATTAGTAATTTGTGAAATTTGGACATCATTGTTCATCAGGCTTGAAACCACTATCTAAAATTATTTTTGTCATTACACCCTTAAGTTTATCAAAATGATTTAAAGCTTGCACATTGCTAACTCTAAGCAATCTTATTTTCCCATCTTTTTTATAAAACACCTGAAAAACTTCATCGCTTTGTTTGCATTTCACCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCATGTAAACAATTAATAATAGGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //