Array 1 238125-235974 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWIL010000006.1 Citrobacter portucalensis strain LHC31-1 NODE_6_length_298006_cov_149.408695, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================ ================== 238124 29 100.0 32 ............................. CGCACCTTTAGCATACTCATTACGCAACACCT 238063 29 100.0 32 ............................. GAACGATGTAACCGATATCGCCGATGACGTGT 238002 29 100.0 32 ............................. CGACTTACATTCGCTGAAATATGCGCCGCAAT 237941 29 100.0 32 ............................. CCGCGTTTACGCCGCGCTGGAGCGCCTGGGAC 237880 29 100.0 32 ............................. ACTGGCAATTCATCACCGGTGCCGATTTCGCC 237819 29 100.0 32 ............................. TTTTACGCCGAGCGAACGCTGAGGTTTACTCG 237758 29 100.0 32 ............................. GTGGATACCCATCACGCGGGTGAGGGAAGAAG 237697 29 100.0 32 ............................. AATATGATAACGGTTCTCATGTTCTTACCGCT 237636 29 100.0 32 ............................. ATCACGGACGTGATCGCCCTGTTTTTAATATG 237575 29 100.0 32 ............................. CCAACATCTGTTAGGCACTGCTGCTGATATTG 237514 29 100.0 32 ............................. GGGGAGTGATGGAAACGCTCATGATCATTCAG 237453 29 100.0 32 ............................. CGCTCCTCGGCATCTTCCAGCGCCTGCCCGGT 237392 29 100.0 32 ............................. TGGATGGGCTGGAGTCCGGCCTATGCGAAGAA 237331 29 100.0 32 ............................. ATTTTACGTCCGCGATGCAGGGGCTGGAAAAC 237270 29 100.0 32 ............................. CGCAGGAGTCAGCTGTTAACGCTCTGGGGAGA 237209 29 100.0 32 ............................. GCGCTCAGCGTTGTAGGGGTAGCGTTACCAGA 237148 29 100.0 80 ............................. TTAGGGAGAGAACTAGGGTACTCACAGACTAGGTGTTCCGATAAACCGTTTTATGCGGCCGTTTAAACAGGCTTCATGGC 237039 29 100.0 32 ............................. CGCGCCAACCAGGACAGTTTCTGGCGCTCAAA 236978 29 100.0 32 ............................. TAATCGCAGACGTCGAGATCAACGGCAAGCAG 236917 29 96.6 32 .....G....................... GGCATGGCTTCATTTTTACTGCTTAGTTAATT 236856 29 100.0 32 ............................. CACAGAGAGGGATATAACTATTTCGCGCTACA 236795 29 100.0 32 ............................. CAACGCGCAGATGTTCGAAATCGACACATCAG 236734 29 100.0 32 ............................. CATCGTACTGATGTTTTTATTGATGTTGCGCG 236673 29 100.0 32 ............................. GCTATCCGCACTGCACCCGAGAGCTGAAAGAA 236612 29 100.0 32 ............................. TTACCTCCGAGGGCTTTCACTATATCGGTGGC 236551 29 100.0 32 ............................. AGACGGAGCGCCTGATAGAGCAGTCAATGTCA 236490 29 100.0 32 ............................. AAACACCCGGACACGCTCGACACTGTTGTGAA 236429 29 100.0 32 ............................. CGCGGCTGCTTCTTCCAGATCATCACTTGAAA 236368 29 100.0 32 ............................. CCCGCCCACATAGGGAGGCGGTAACAGCTCAA 236307 29 100.0 32 ............................. CGTCCGTGAATATTTACGGGCGCATATTCGAA 236246 29 100.0 32 ............................. CGGGTGAAAATAAACCGCGTGCTGGAGGCGAT 236185 29 100.0 32 ............................. CCAGTGCGGCCAGTAGAATTGGGTTGCGTGGT 236124 29 100.0 32 ............................. GATACGCCTGAATTCGACGTTATCTCGCCTAC 236063 29 96.6 32 ...........A................. AATTTATCCGGGACTACAACATATCTCTTTAT 236002 29 89.7 0 ..........................GTC | ========== ====== ====== ====== ============================= ================================================================================ ================== 35 29 99.5 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATCGAAGATGTTCTCGCAGCAGGTGAAATCCAACCGCCGTTACCTCCTGAAGATTCACAGCCCATCGCAATCCCACTTCCTGTTTCTGTGGGGGATTCTGGCCATCGGATTAACTAACGATGAGTGTGCTAGTTGTTGTTACAGAAAACGTACCACCTCGCTTGCGAGGCCGACTTGCCGTCTGGTTGCTGGAAATTCGAGCTGGTGTATACGTTGGTAATGTTTCAACGAAGATCCGCGAGATGATATGGCAACAGGTCTCCGTTCTGGCAGAAGAAGGGAACGTTGTCATGGCGTGGGCAACGAATACGGAGTCGGGCTTTGAATTTCAGACGTGGGGTGAAAACCGACGTATTCCGGTGGATCTCGATGGATTACGATTAGTGTCGTTTCTGCCTGTTTTAAATCAATGAGTTAGCGATCTTTAAAAATACGGAAAAGTTGGTGGATTTCTTGTATGCCAAAAAAGGCTTAAAATTCAGTTGGGTAGTTTTAGA # Right flank : ATTTTAGCGTTACGTATTGAGCCGATGATGTCGTATTCCCTACTGGCATAGAGACGAAAATGATAGCCCAACGTCTTCATCTAAAAAGGTGCTAAGAGTTTTTACCCGCTTTTGCCAGTTCTTTTACCAGCGGCAGCATAATGCGTACCACGTCGCGGCTACGGTGCTCTATCCGGCCCGGTAACGCTTTATCGATATGCTGTTGGTTATCCAGTCGTACGTCGTGCCAGCTGTTGCCTGCCGGGAAAGAGGCGCTTTTGGCGCGCTGCTGATAGCCATCTTTCTTGCCCAGGTTCCAGTTGGTCGCTTCAACTGAAAGAACGGCAATCCCCGCGTTGTCGAAGACCTCTGCATCGTTACAACATCCAGTGCCTTTCGGATAGTCTTTGTTCAGACCTGGATTGGTGCTGGCAACGATACCGCGGCTGTGCGCGATAGCCAGTGCCCGGTCGCGCGTCAGTTTTCGCACCGCTTCCGGGGTTTTCTTACCGCTATTGAAA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //