Array 1 3220560-3221869 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010183.1 Escherichia coli strain M3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3220560 29 100.0 32 ............................. GCGCTGGGCTGAACAAACCAGATTCAGGAAAA 3220621 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 3220682 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 3220743 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 3220804 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 3220865 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 3220926 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 3220987 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 3221048 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 3221109 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 3221170 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 3221231 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 3221292 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 3221353 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 3221414 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 3221475 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 3221536 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 3221597 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 3221658 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 3221719 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 3221780 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 3221841 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3247568-3249037 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010183.1 Escherichia coli strain M3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================== ================== 3247568 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 3247629 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 3247690 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 3247751 29 100.0 32 ............................. TGCGCGGAACGGAGATTGTAAATATCAAAATC 3247812 29 100.0 32 ............................. ACACAGGCGCGAAAACAATCGAACGCGCTAAA 3247873 29 100.0 32 ............................. GGAGGATGTTCGGTCCCGGAACTAAACCGGCA 3247934 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 3247995 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 3248056 29 100.0 32 ............................. CGTGGAGGAGAGGGCGACGCGCTGGCAGACAC 3248117 29 100.0 69 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATAAACCGGCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 3248215 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 3248276 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 3248337 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 3248398 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 3248459 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 3248521 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 3248582 29 96.6 32 ............T................ CAATTCATAAATTAATTTACTATTTTGAGTGC 3248643 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 3248704 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 3248765 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 3248826 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 3248887 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 3248948 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 3249009 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ===================================================================== ================== 24 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //