Array 1 3220-2611 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEGC010000010.1 Microcystis aeruginosa BLCC-F158 A6_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3219 36 100.0 37 .................................... CTTTTCTTTACAGAGAATGTTCAGGTGATTTCGGATC 3146 36 100.0 34 .................................... AATTGCACCCTGGCATTCGTAGCATTGCGCTCTA 3076 36 100.0 34 .................................... AACTGGGCCAAACCGAGGAAAATTTAGAGCGGAG 3006 36 100.0 35 .................................... CAGTTGGATGCTTTTGGGTACGGCTGGAGTATTCA 2935 36 100.0 40 .................................... ATGGTCCAACCAACGATCGAAATGGCCGAGGCAATTAGTA 2859 36 100.0 35 .................................... GAAAAGTTAGTGATTTTGTGCTAGAATGGTTCATA 2788 36 100.0 36 .................................... TTAATTTCTGTAACAATTCACTTAACCAAACAATCT 2716 36 100.0 34 .................................... AAAACTAAAACCCTGTCAGCAAGCGAGAGTCAGT 2646 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 100.0 36 GTGTACTAACCTTTGATGCCGTAAGGCGTTGATCAC # Left flank : GAAACTCCTAGCTCTCAGCCACCAGATAATGCTTGGATTTGGACTCCTAGAAAACCCCTAACTTGATTTTTCGCTGTTGGTTAAGTGTGCGAATGCGAGAAAAATTGCGCTGGGAATTGGAAAAAGTCCTCACCCCAAAAGACGACTTAATTTTAATTCGTCTGTCGGAGCAGTGTGTGCGCGATCTACCTAAGTACAACCGACCTAACACATGGCTTTTGGACGAAAAAGGGTTTCGGGTAATCTAAAAAAAACAAGCATCTCTGGCTGGGAAAAAATCTACGGGCTAAAATTTATTTGTATTGCTAATGCTGTCTCGATTTCAGGGTTTGACAAGGAACAATTCCTGCTTGCATTTTTTGAAAGTCTCACTGAATAACGGTTTTCAGCTTTGGTGCTGTCACTCAAAAGCTCTGATCGGGAGATTTCTTGGCGTTTTTCTAGAGGTGCTTGTAAAATGGACTGCGAAGCTATACACCAAAGGCTTTTTCAGCCTCGCC # Right flank : AAAGACACCCTACTGGACTGTTTCAGCTAAAATAGGGCAATAGATTTCGGCTTAAAGTCTTAGATTATAGAATTTATAGCATTTTTCTAATACACCAAATTAGCTGAAACAATCCACTACAAGAAATTAAGTTTATTACCCCTTCGGTGTGATAAAGTGGGAAGCGGAGATAGACGATAGAGTTGCTAATTTGTAGGGGCTGACCGATGAGGAAATAAAGATTATTAGGGGGGAGTAAATCATGAGTACAGAAGAGGAAATTCTCAATCAAATAGCAAACTTCACTTCCACGGAATGGAATATGTGGAAAAAACAACAAGAACAGAAATCATTACACAGGTTGTCTTTTCCAGGCTTCCATCGATTTTCAAATAAAAACTTTCAATATTTTGATTTCTCTAAAATAGATTTTCCTTCTAATGAAATATGGAACTGTGATTTCAGTAACACTAATTTAATTGAAGCCACCTTAAAATCTACTAAAATTTATCAAACCGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTAACCTTTGATGCCGTAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 47-1166 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEGC010000121.1 Microcystis aeruginosa BLCC-F158 A6_contig_121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================================== ================== 47 35 100.0 35 ................................... GTTAAGCTGTGAAGGGACGTTGAGTGTAATCTTAT 117 35 100.0 36 ................................... AGATCAATCTTCTGCTCTAAGAGTTCGATCTCCCTT 188 35 100.0 37 ................................... GTCCTCATCTTCCGGGCTGAAACACGTTGCCCAGCAG 260 35 100.0 42 ................................... GTTTTGGTAGTCATTTTTAGAGATGGCCGCCGTTGTTTTAGA 337 35 100.0 36 ................................... CGAAAACTACTGAACTTGAACTGTCGGTTATCTCAG 408 35 100.0 40 ................................... TAACAAGGGCGGAAAAGAAACCGGCAATTTTTTTCATTGA 483 35 100.0 32 ................................... CAAAACACAGCACCCACGTAGCATCGGTTGTT 550 35 100.0 37 ................................... GTCATAAATCGAGAGATCGATGGTTCTACGGCTCTTT 622 35 100.0 40 ................................... AGGAGAAGTGTGTTCAATGACAATCGTGTTTCCTTGTTGA 697 35 100.0 40 ................................... AAGGAGACCCCGATGGACCCCGCTAGTTTAGTGGAGAGGG 772 35 100.0 47 ................................... TTCTGTAATCGCTCCCTCATGAGGGTTCGGCGATGGAAAAACACATC 854 35 100.0 35 ................................... TTTTGGGCCACTCCCAAAAATATAGTGTAATCATG 924 35 100.0 29 ................................... AACGGCAAAAAGTTTGCTGTAGGGTTCAT 988 35 100.0 35 ................................... CACTTGTTTCCGCCATGGAGGGGTGTTGCCATCAC 1058 35 100.0 39 ................................... GATGTGTAGGGTTAATTCATGAATTAACCCTACAATTTT 1132 35 74.3 0 T..AA........A..T...T.CC.....A..... | ========== ====== ====== ====== =================================== =============================================== ================== 16 35 98.4 37 CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Left flank : TCGGTAATGGGCTTGACGGTACCGGCAGCTAGTTCAACGATATCGGC # Right flank : CGATGCTTAATTAATAAAAATCAATAAAAATAAAGATTGTTTAAGAAAAATTATTTAAAATTAACATAATAATTAGAAATTTAGTGATAGATATAAAATTACAAAAGAGCCAATTAATCTAACAATCCTATTTTTTTAGCCAGAGATAAGTCTTTTCTAGGTCTTTTCAAGGCTGTTGAATATACCTCTTAAACAATCGAGTTTTCTATAGCTTTATGTCCAAATATATAGCGATCACCTTCTCCCCCGTCCAAAGCTTTATTGAAAAATCCCGCAAATTGAGGGACCTGTACGGAGCCTCTCAGATTCTCTCGGATCTGACCAGTACAATCGTCACCCACCGGCCCGAGCAGTACCACCTAATTAGCCCCGGACTGCTAAACTCCCAACAGGGAATGCCCAACCGTGTTCTCCTGAAAATCGATAGCGAAATGCAGTCCTCCTCCTCCGAGGAAATCATTGCGGAACTGCAACGAGCCTTTTTAAATCGTTGGAAAAAT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 16-333 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEGC010000378.1 Microcystis aeruginosa BLCC-F158 A6_contig_378, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 16 35 100.0 40 ................................... TCTTGAGCGGCGAGATCGCGGTCGATCTGTTTCAGCTCGG 91 35 100.0 30 ................................... CTAAACTCTTTGCCATCTGGAGGTTCCCCC 156 35 100.0 36 ................................... ATCCAGCGTCTAAGCGCCGGTGAAAAACCGCGAGTT 227 35 100.0 37 ................................... CCAAAAGGATTTTGAATCGCATCTGGCACATCAAAAG 299 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 5 35 100.0 36 CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Left flank : GAAAAGGATCAACTTC # Right flank : AGAATGCCAGGGATCAATCCCATCTCATCGGTTAAGAAAAATCCGAGATTTCAGCAGGATTATGCGTCAGTGGGGACAAAAATTTCAGAGGAAGTTTAACCAGACTGAACTCGGCAGAATAATTTATGCGGGAGGAGATGATTTTTTAGGCATCGTTTATAATAGCCAATTTCCTGATCCACAACTCGATCGATCTCGATCGAGTTCTCCACTGGCTACAAACTCCTCATAAGTAGGGTTTGCTGAATAAATGTGAAATGTAGGCAAGGTCAGGGTTTTGTGGCTTTTCTCGT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 449-44 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEGC010000412.1 Microcystis aeruginosa BLCC-F158 A6_contig_412, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 448 35 100.0 39 ................................... TGCTCAACAACTTCGCTGCCAGTTGTTTTACAGTCGGGT 374 35 100.0 40 ................................... GCTGGATATGGCATACTTCCAAAGTTGTAAATCAGCACTG 299 35 100.0 38 ................................... CTCAAGGGTTGTTATTCCCAAGAAGGTGCGTTGGTTAT 226 35 100.0 41 ................................... CATGCCTGCGACTTGAGAAAAGGTATATTCTTTGCTGTTAT 150 35 100.0 37 ................................... TGAACGATACCGTCTTGCTCACGCGCCATCGTACCGC 78 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 6 35 100.0 39 CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Left flank : AATAACACCCCGGAATCATCGACAAGAAATTCAAT # Right flank : CGTGGGTTCATTTTTTGTTTTCAACTCGTTTCTGAGTTTTTGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 18391-18067 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEGC010000047.1 Microcystis aeruginosa BLCC-F158 A6_contig_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 18390 35 100.0 41 ................................... GCCATGAAATCTAGACGATCTTGATCTTGATCAGCTTCTTC 18314 35 100.0 36 ................................... TATATTGCGTGTAAATTTTTACACTGACCTCATACT 18243 35 100.0 35 ................................... CGACAACGACTGCTTTGTCGATCCACTCGTTAATG 18173 35 100.0 37 ................................... TCTCGGTAATTGGATCGGCTGAAAGGATCAACCTTAT 18101 35 94.3 0 .............T................A.... | ========== ====== ====== ====== =================================== ========================================= ================== 5 35 98.9 38 CTTTCATCTCTTACTCCCCGCAAGGGGACGGAAAC # Left flank : AAAATCGGTTACTGTAGGGGCGCAAAGCTTGCGCCCTCCGATCGATCAGGTTTGCTGATCACTCTAAGTAGGGGGAGAGCCTTCGAGAGCCTCCGCAGCTAAGGGACTTGCGCTTTGATAATATGCCATCTGGCTGGTCTGCTCCTTCTACAGAGGGATTTTCTGGCTGGGATATTATTCCCACGCAAGTCCCTATTATCTGAGAACGGTGGATTTTTACCTGACTATTAACTATAATGGTGATCGCCACTGCACCTTGACAAATCTATAGAGTTTTCCCCTTTCTTCGATCCTTCCTTCGGGGCAAATCGACGCACCTAACCCCACGGTCCGAAAGACCATATTTTCCGTCGAGGTGCGTCGATTCCTCTCCCCGTCTAGGTTTCGGGCTTCAAAAAAACAAAATATGGCGATTAGTAACTCTCTGCGGTAAGCTCTAAATAGGGGTGCGTCGATTTAGCGTCTAGAAACCTTTCGCCACAAGACTTCCTAGAGTAGCT # Right flank : TACTAAAATTGCTTTAACAATCTTATTAAAAATGTTTTTGCTGAAAGAATCTCGCTCTTTTTTTAGACAGGGATGGACGATTGCAGTTTTACTAATTGCCCTGCTTGTTTCCCTGCCAATTTTATCGGTGGCCAGTAGTTTATTAACTAATTCCAGTCAAGTCTGGCAACATCTGATCGAAACTGTTCTCTGGGATTATCTAGTTAATTCTTTTTGGTTAATGAGCGGGGTGGGTAGCGGCGTTTTAATCATCGGTGTTGGCACCGCTTGGTTAATAACGATGTGTCAATTTCCCGGTAGTAAACAATTTCAATGGTTATTATTACTACCCCTTGCCGCTCCTGCCTATCTCTTGGCCTATACTTATACCAATATGATGGACTATTTTGGTCCAGTGCAGACCTTCTTAAGAAGTGTTTTCGCTTGGAATAGTGTCGAAGATTATTGGTTTCCTAATATCCGTTCTCTTTGGGGAGGGATTCTGATGTTAATACTGGTGC # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCATCTCTTACTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 29638-29322 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEGC010000047.1 Microcystis aeruginosa BLCC-F158 A6_contig_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 29637 36 100.0 34 .................................... ACTAGGTCGCTAACCGAACCCAAAAAAATCCTCG 29567 36 97.2 34 G................................... CAATTTGGCAGCAAGGCCGGCAAGAATGAAACGA 29497 36 100.0 35 .................................... GTTAACCCCGAGAACGGAGCGCCATCTACAACATA 29426 36 100.0 33 .................................... TTCATGGGACGCTCCATCACATACAAATGATGG 29357 36 88.9 0 .A...............................GTG | ========== ====== ====== ====== ==================================== =================================== ================== 5 36 97.2 34 TCTTTCATCTCTTACTCCCCGCAAGGGGACGGAAAC # Left flank : GTTTTAAATTTAATTATAACCAGCTACTTATTATCTGAGAGCGGTGGATTTTTACCTGACTATTAACTATAATGGTGATCGCCTCTGTACCTTGACAAATCTATAGAGTTTTCCCCTTTCTTCGATCCTTCCGTCGGGGCAAATCGACGCACCTAACCCCACGGTCTGAAAGACCCTATTTTCCGTCGAGGTGCGTCGATTCCTCTCCCCGTCTAGGTTTCAGGCTTCAAAAAAACAAAATATGGCGATTAGTAACTCTCTGCGGTAAGCTCTAAATAGGGGTGCGTCGATTTAGCGTCTAGAAACCTTTCACCACAAGACTTCCTAGAGTAG # Right flank : GACAATCTAGCAATGGATAACATGGTTGGTCAGAATTAACTCCTTTTTTTACCCACTTATAGTAAAATTGTTCTTAATAATAAACCCCAGTCGCGGGTTCGGTGCGCCAACACCAGAAGCCCCACCGGGAGTAACCTGACACAGAGGTCACAATGAGTATTTTACGTTACGAAGAAAACGGAATTGAGTTCTTCACCCTAGAGGCTACGGGTGAGTCAGGCATCAGCCATCGTGGATTAGCACTCCTCTGCGGCGTGAGTCATACCGCGATTAATCATTTAGTAAAAAACCTGGAAACCAAACAACCGCCTAAACGCCTACAATCTTTTGCTGGCAAGGATTTACACCTGGAAACCAATAAACGAAAACAAGGCGGTGTAGTCAAGGTTTTACGGGCAAATTTGTGTGCTGCTATCATCAAGCATTACGCCTTAGAAGGAAATGAAACGGCTGAATATAGCATGGATAAATTCCTGAGTTTGGGGATTAATACCTGGATT # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTTCATCTCTTACTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 3096-2843 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEGC010000014.1 Microcystis aeruginosa BLCC-F158 A6_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================== ================== 3095 34 100.0 39 .................................. TTCATCATAATTTCCTAGGGGTTGCTCCCAATTCCATCC 3022 34 97.1 38 .......T.......................... CAATAGACCAAATCAGGTACCCAGAAGAGAACCACAGC 2950 34 100.0 40 .................................. AATGTGTAGGGTTAATTCATGAATTAACCCTACAATTTTT 2876 34 88.2 0 ............A.................C.GG | ========== ====== ====== ====== ================================== ======================================== ================== 4 34 96.3 39 TTGCTTCCAATTCGTGAAGCGTCTGAATGGAAAC # Left flank : GATGGTTTCCCAGTTCTAAACGGTGCAGTAATTGCGGGTATATTGCTGAGAAAATGCCGTTAAATATTCGAGAGTGGGACACACCATGACCGAGATATTAACGCCAGTAAAAATATTTTGGCCGCAGGGCTTGCGGTGTCAGTCCGGTTCGCGACCTGATGACCAGAACAGAGTAAAACTGGGGCGGCAGCTGCGAAAAATCCTTCGGGACACCAATCCGTGAAGCGTCTGAATGGAAACAATGTGTAGGGTTAATTCATGAATTAACCCTACAATTTTTTTACTTCCAATTAGTTAAGTAGCTGGTTATAATTAAATTAAAAATGGATTTTAGGTTCGATCCCCCCTGCCCCCCTTAATAAGGGGGGTGCCGATAGGCGGGGGGATCCCCCCTGCCCCCCTTGATAAGGGGGGTGTCTGAAAACTTTTAACACCTACCTACTTAAGCGTCTGAATGGAAACTACTCTGGCTCGGAGAGCCCAAATGTTCTCCTTAGAAG # Right flank : GATATATAAATCAACGGGAATCATCTATCTGGAAAATTTACCGTTGACATCCTCACCACCGTAAAATGGACGGCGATACCGATTCCGACGATTTGGTTTTCCTTGCCGTTTACCGTCGCGCACCTAAAAACCATTCAGTCTAAAGAGAGAAAAAAACAGAATCAAGAGAACATCCCTGTGCATAGTTTTCGGACTTTATTGAAGGACTTGGGGACGATTTGCTTGAATACGGTAGAATGTACGATTAAAAAGGGAAGTGATCGTTTTTCTAAGATAACTCGACCGATTTCTCTACCAGAAAAGGCGTTAGATTTATTAGGGGTTTCCCTGATTTGTACCCAGTAGCGAGCGGCACAAATTCTTTTAATCTCCCCCACAGCACAGGTTATGGCCTTTTGTCAACGGGGAAGTCTAGATCTTTAACAAATCTAATTTCACCGAAAGATTAATTTAACCTTGATCGGTCGGGACTGATTTCTTAACCTTTTAATAAATTGATT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCTTCCAATTCGTGAAGCGTCTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 46060-40938 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEGC010000006.1 Microcystis aeruginosa BLCC-F158 A6_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 46059 36 100.0 36 .................................... AAGGATGCCCTGAAAAAATTTGAGGCATGGTACTGG 45987 36 100.0 35 .................................... AACCTCGGCGGTGGCTGAAACGCCGTCGCCGTCTG 45916 36 100.0 35 .................................... TTATGATCAACTTTTGCCTGCTTGCCAAGCTCTCG 45845 36 100.0 36 .................................... TAATGATGTGGACCGCCGCCGGGCAACGCGAGAATG 45773 36 100.0 37 .................................... AGAATTTCGAGCATTTCTCCCTGATGCTCTCAAAATC 45700 35 83.3 36 ..G-...A..G...TG.................... AGAATTTCGAGCATTTCTCCTGACTTAGGCACAATG AA,CC [45679,45684] 45625 36 100.0 35 .................................... AATAACGGCTTTTTTTGGGGGATTATCGGCAAATG 45554 36 100.0 32 .................................... AACAGAAGCAATTCTGATAAATTCCCCGAAAG 45486 36 100.0 35 .................................... ATTTAATTTGTGAGCAATAGTACCAGTTTGATCGG 45415 36 100.0 38 .................................... CCGTATTGGTCAGGATTCCCAAGCCACAGCAGATATTG 45341 36 100.0 36 .................................... GCCACCGCCGAACACGACAAAGATATCATCGAAGTG 45269 36 100.0 35 .................................... ACTTTTACGATGCCGCAGCTGCTCGCCATAGTAGG 45198 36 100.0 39 .................................... TGCTATGCCGAGATACCCAATTCCCTGATGCATCTCGGG 45123 36 100.0 37 .................................... GTGAGTAATGTAATCGACGTTGTGCGATATTCTCAAG 45050 36 100.0 42 .................................... GATTACATTACTCACAACGAAAGCACGACAGGGCAGAGGAAG 44972 36 100.0 36 .................................... TTAACTACCTGCTTGATTACTTTTAGGCTACACTCG 44900 36 100.0 36 .................................... AAATATGTCACCCGATCAAGAATTGCAAGTATTATG 44828 36 100.0 40 .................................... GAGTGGGGGGAATTCTTCTTTACGCTGATTTTCCCCCAGG 44752 36 100.0 35 .................................... CAAATCGGTAAGAAATTCGGATAATTTCAATCCGG 44681 36 100.0 35 .................................... CAGTACACAATTAGGAGACTATCACGGAAAGGAAG 44610 36 100.0 35 .................................... CAGAGATTTTTTGGATGGTTCGCAGTGGTACTCCG 44539 36 100.0 41 .................................... GATAAAAACCGGACGGCGTGAAGACTGTAAATAATTGATCG 44462 36 100.0 37 .................................... AGGGTTGTCTGGATGCCATCTCACATGAACATCCTGG 44389 36 100.0 36 .................................... TAATTGACTCTCTGCCTGCGTAGCAGCAGTCACCCG 44317 36 100.0 36 .................................... ATTCTTTGCTGAGAATGTTTCGGTGATTTCGGATCG 44245 36 100.0 38 .................................... AAGAGCGATCGCTGATTCGGGGCTGGAAAATGCCCGTG 44171 36 100.0 37 .................................... AATCTTGCAAACTTTTTTGCACCAAAATCAATCACCG 44098 36 100.0 40 .................................... GCCTCACCTGATTGGGTAGAAACAATCGCTCTGAGAGCCG 44022 36 100.0 38 .................................... AATGTTGAACATGAATCGGGAGATGTTGGGGGCGAAGG 43948 36 100.0 37 .................................... CACTGCTGGCCGCCGCAACTGGCAAACGATCGCAAGG 43875 36 100.0 41 .................................... TGGGACGTTGGCAGTGGAGGGGGATTCTTTAAGCTCAAAGG 43798 36 100.0 34 .................................... CCCAACAGAAGCCTCATATAGAGAGGCTGTTTCG 43728 36 100.0 36 .................................... ATCGGCTTAGGCTACGATGGGCCAAGCATCCCCCTG 43656 36 100.0 36 .................................... TTGCTAATCTGAATAATCGTCAGCGCCGCTTGGATG 43584 36 100.0 39 .................................... GCAAAGCATATTTACACTTGTACTAATGGAACACTTAGG 43509 36 97.2 36 ......................C............. TCCGAAATTTCTCGCGGTAAATAGGTAGTTAACGAG 43437 36 97.2 39 ......................C............. TGATGAAATCTACTTTTCTATTTAAATTATACACAAAAG 43362 36 97.2 36 ......................C............. ATCGAATCCCAACAGGCGATCGAATCTGCTAAACTG 43290 36 97.2 38 ......................C............. GATTTTGACCATCCCAACAGGCAGTGACTAACCAAGGG 43216 36 100.0 36 .................................... CCGGCAGCGATCGAATACACAGCCGAGCTTTTGGAA 43144 36 100.0 37 .................................... GATCAATGTGCAATCGTCAGGGGGATTGATGCTCTCA 43071 36 100.0 35 .................................... TCGGCGGTGATCCGCGAGATAGTGATTTGATCTTA 43000 36 100.0 35 .................................... ATGGGATTAATTCCCCTGGCCTCGATCGCATTCTA 42929 36 100.0 34 .................................... CCCGCAGTTTCTTTTATGTGATTTATAGCCCTGA 42859 36 100.0 37 .................................... ATCCGATCGCATCCTTCATAGAACAAAGATACTCACA 42786 36 100.0 43 .................................... CAGCAAAAAGCCAACTCGAACAACCAAAGAAGAGTATAGCAAA 42707 36 100.0 36 .................................... TCCTTTATCTCCGCGACTCCCAGGCTTCCCGTCTTA 42635 36 100.0 35 .................................... CTAGCCATTTTTAGGTCTGTGCCAAGAATGCACTA 42564 36 100.0 36 .................................... AGCGATGTAATGCTCCCAAGTACCCCATTTATCGCA 42492 36 100.0 39 .................................... GATCTAATCATTCAAAGTGCCGATTCAATTCCACCCTTA 42417 36 100.0 38 .................................... AGGGTCAAGAAAAGAAACCGACCTCTAGGATAATCAGA 42343 36 100.0 35 .................................... AAAACTATTCCCCAGTCCGGCGCGACGGTTGCGAA 42272 36 100.0 35 .................................... ATCAGAGACTTTGCAGCCTCTACATTCGAGCCAAA 42201 36 100.0 35 .................................... TGTGAGGTGAAAAGAAATCGCCGCCAACCAATCCA 42130 36 100.0 36 .................................... GGCTAAAAGGACGGGAATTAATTATTACGCTATTTA 42058 36 100.0 44 .................................... TTTATATTCTTTTAAGACTTTCCGCGCTTTCGGTGAATCGATCG 41978 36 100.0 37 .................................... GCCGATTTGACCTTGCCTGATAACCAACGGGCGCGAG 41905 36 100.0 35 .................................... ATCAAAAATATTTCTTAGCATTTTTTTACCCCTTG 41834 36 100.0 36 .................................... TGTGACGACGATGCGAACGAGTTAGGTGACGCTTTG 41762 36 100.0 34 .................................... ATCGGTACCTAGGCGAGGATATTAGTGGGTCTAG 41692 36 100.0 34 .................................... AGGATTTCTCCGCTTTAATTCGCGCATAGCCAAG 41622 36 100.0 43 .................................... GTAGGACTGGAAAACCTCCTCTAATTTTCGCATCGCCTGCTGG 41543 36 100.0 36 .................................... CTTTTCAAAGCCGCATCAAAGCAGGAGCGGATTCGG 41471 36 100.0 36 .................................... ACTGGGTTTTAACATTGATGCGATGATCACATCGAG 41399 36 100.0 36 .................................... ATCGCTATTTAGGCGAGGATATTAGTGGGTCTAAGG 41327 36 100.0 36 .................................... TTCGCCTCAAAACTATAGGGATTAGGCGTAACCTCG 41255 36 100.0 37 .................................... AGAAATAGTACAGGAAACGGGAGCCATCCTCGTACTG 41182 36 100.0 37 .................................... ACCCGATCGCATCCTTTATAGAACAAAGATACTCACG 41109 36 94.4 29 ......................A............T ATAATAAAAGAGCGAAAACCAATAGGAGG 41044 36 100.0 35 .................................... GGTAAATATGCTTATTGTTCCTCACTCTATTGTTA 40973 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 71 36 99.5 37 TTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Left flank : TTTGTTGTCAGTTACGATATTTCCGACGATAAGCGACGAACCAAAATTCACAATACGTTAAAGTCCTACGGCCAACGGGTGCAGTATAGTGTTTTTGAGTGCGATCTAACCGATACCCAGTACGCTAAGCTGCGCGGGCGCTTGAGTAAGTTGATCAAACCCGATACCGATAGCATCCGCTTTTATTTTCTCTGCGCCTGTTGTCGGGGTAAAGTGGAACGTATCGGTGGTGAGTTACCCCGGGATAATACGATTTTTTTTGTTTAGCTCGGTTGCGCCTCGGAGTAGCTGTAAAAATCCTTAACTATTATCTGGTGGCTGGAAAGCTTATGCAATATAGATTCGAGATGATTTTCCTTTCTAACGCGGGGCGCACCTTATCCCGTAGGGTTTTGCGGGGTCTTGAAGAACTGGGTCACTTGCTGTACAATAGATTTATTGCGGGTGCGGCGCATACGAACCTTGAAAACCCCATAGCGTATAGCTTTTACCACTGGGCG # Right flank : GTTGGCCACTTATCCCCCGGCCAGAGATATTTTTTTGAAGCTTCCCCGCATCGAATTGGAAGCTTTACCAGAAAGGGCGATCCGCGAAATCATGGAAGGGGAAGCAAACGATTTGGGATTGCAGGTGACACCGGGTAAACTGGCTGATTGGCAACAACGGGCGATCGGTAATCCCATGTTAGCGAAACGGGTGGTCAAAGAGGAATATTTAGGATTGGAGGGTAATAATTATGACCATACCCAGTGGATCGACGGCACTCCCCTACTAATCGCTGTTCTCATGGGTTTTATGATTCTCAGATTCTTGGAACTGGGATTAAATAACACCAGTCTTTATCTGATCGGCGGAATCCTAACCGTGGCGGTGGGAATGGTCAGGTTGATGATTTATTCGTTACCGCTCAACTAAACTTACTCAAACTTACTTAAAAGCCTGAAAGCTTAGTCATTCGTAGTGGGTCAAGCACTACAGGATTAAACGGCAAACCCTTTATTCCCTG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA //