Array 1 1585202-1582963 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENRM010000001.1 Clostridium perfringens strain CHD10463P CHD10463P_seq1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1585201 29 100.0 36 ............................. TTTCAATTGTATCTTTGTCAATCTCTAACTCTTTTT 1585136 29 100.0 37 ............................. AAGGAAAATAATGCAGCTAGAACGCTTTCTGAATCTC 1585070 29 100.0 36 ............................. TGTACTAAAACTGGATAATCTCCAATATCTAAATTA 1585005 29 100.0 36 ............................. ATTATTGTAAAGTAATACTAAGAAATACTAAGTATA 1584940 29 100.0 37 ............................. TTATTTATAATCTTAAAAATAAAGAGGGAAGCTATGG 1584874 29 100.0 36 ............................. AGTTGATATTTGGAGTAAAGATGGAATTGAAGCTAG 1584809 29 100.0 36 ............................. AAGAAGAACTTTACAATGCATTAAGAGAAGAATGTA 1584744 29 100.0 36 ............................. ATGTTAGCTTTGAAAATGCTATAATTGGTACAAGTA 1584679 29 100.0 36 ............................. TAAATATTTAATAATTGTTTAAATATACTTTCAAAA 1584614 29 100.0 36 ............................. TATAAATTTGTTAAATATAATCCTTATACGATAGAA 1584549 29 100.0 36 ............................. TCCCTTCTTCTTTCCACATTTTATATCCTGTAATGG 1584484 29 100.0 36 ............................. TGTACTAAAACTGGATAATCTCCAATATCTAAATTA 1584419 29 100.0 36 ............................. TTGGTATTACTAGCTTTGAAGCACTTACAAGTAAAA 1584354 29 100.0 32 ............................. CTCCTAAATCACAATCTTTAAAAGACAATTCC 1584293 29 100.0 36 ............................. CTTATAGCTGCATTGATAGGTGCTTTAATAACTCCT 1584228 29 100.0 36 ............................. TGTTAAAGTAGGATATTTTAGAGAGTTTGGAACTAT 1584163 29 100.0 36 ............................. AGTAATGATAATAGATTAGATGATAACTTAAACTGT 1584098 29 100.0 36 ............................. AAAGAGTAAAGGCAGATACTTTTGTTTCTCCTTTGC 1584033 29 100.0 37 ............................. ATTACCATATTTTTCTCTTAATCTTAAAAGTTCTTCG 1583967 29 100.0 36 ............................. CTTATAGGTGATGAACCTGATGAACTTGTAGCATTA 1583902 29 100.0 36 ............................. TTTTAATAGTATAGGAGATGAATTAGAATGAGAAAG 1583837 29 100.0 36 ............................. TTGTCTGAACGAATATCTATGTTATAAACTTTATTA 1583772 29 100.0 35 ............................. ACGAAACCAAAAGAACAATAATACTTTTCCATTTT 1583708 29 100.0 36 ............................. TGTTAAAATCATCTTCATTCATGATTTGGAAAGCCT 1583643 29 100.0 36 ............................. AACATTGGTGTACATTTAACACTTAAAGATTTTAAC 1583578 29 100.0 36 ............................. AATGTTTGTGTCCAATCTCTACTAAATGCTCCTTTG 1583513 29 100.0 36 ............................. ACTAATTTCATTGAAATACCTCCTAATAACTAACGT 1583448 29 100.0 36 ............................. TGTAATCTCTACATGTACTATGACACCCAACAATTC 1583383 29 100.0 37 ............................. GGAGTTTTACTTTTCTTTATATCTTTTCTTTTCCATG 1583317 29 100.0 36 ............................. TTGGTATTACTAGCTTTGAAGCACTTACAAGTAAAA 1583252 29 100.0 36 ............................. AAAAGTTATCAACAAGAATTAAGGGATATATCTCAA 1583187 29 100.0 36 ............................. TAGTTTTGGTAAAGTTAATAAGATATTAAAGAAACA 1583122 29 100.0 36 ............................. ATTTTTTGCTCTAACCCTTGCCTTCCCATTTAAGCG 1583057 29 89.7 37 A......C...........A......... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 1582991 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ===================================== ================== 35 29 99.2 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAGGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAAATCTATTTTCTTATAATACTAGCTATAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTAGG # Right flank : AAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGCACCTAATGCAGATATATTTCCAACAATGTTTTGGATTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTAATACTTAATACTTCCAATATATATGATAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATGAGTAATTTAAGTTTTATAATAAGAATTTAAAAGTAAAAATGGACATGCTATCTGTCCATTTTTACTTAACTATTAATATATACTTATTAAATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACAGCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //