Array 1 432447-430827 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031255.1 Neisseria elongata strain M15910 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 432446 36 97.2 30 T................................... TCTGAACCGCAAAAGGCGCAGTTGCTAGGG 432380 36 100.0 30 .................................... GCGTTGGTTTTCGGACTTTTCAGCTTTTGG 432314 36 100.0 30 .................................... ATTCTCCCACGGAATTGAAGTCAATTCGAC 432248 36 100.0 30 .................................... TCCAATTTATTACCTTGTTCATTTCCGTTT 432182 36 100.0 30 .................................... AGATGATGTTTGTTTTACAACACCTGTGAC 432116 36 100.0 30 .................................... TCAACAAAGGGTGCATGGCATCCCGCATTG 432050 36 100.0 30 .................................... TGCTTTATTTCCAACGGCCATTACTTTGAT 431984 36 100.0 30 .................................... TGTATAACTTAGCCGCTATCAATAGTCCTT 431918 36 100.0 30 .................................... AAAAGATGCTGGAATTATGCTCTCCAATTG 431852 36 100.0 30 .................................... TGGCTCTTTAGTTTTAGCCGCCCATAATAT 431786 36 100.0 30 .................................... AGATTTGGCAAAGTTGTTCAGAGGCTACTT 431720 36 100.0 30 .................................... GCGGCGGTCTTCCTTGATTTTGAAGTATAG 431654 36 100.0 30 .................................... TGTGCTTCGTCTATCACAACCAGCGAGCCA 431588 36 100.0 30 .................................... GGGGCATGTGGACTATATGCGCGGCGCGGC 431522 36 100.0 30 .................................... AGGCAAGCCGTTCCGCATGTTCCGACTTGC 431456 36 100.0 30 .................................... GCAAGCTGGTAGGCAACTTGCAAAGGGTTT 431390 36 100.0 30 .................................... AGGCTTTTTCTCATAACCATTGATAACTTC 431324 36 100.0 30 .................................... TGTGCTTCGTCTATCACAACGAGCGAACCG 431258 36 100.0 30 .................................... CTTGCGATCAAAGAAATCTATGATTTGGGC 431192 36 100.0 30 .................................... CTTACAAAAATGTGCACCCAGTCGCAAAAC 431126 36 100.0 30 .................................... GTTAAAACATTACACCCAAAACCAATTACA 431060 36 100.0 30 .................................... GTTAAAACATTACACCCAAAACCAATTACA 430994 36 100.0 30 .................................... TTGCGTTTCCAGCCTAAATGCTTTTGCAAT 430928 36 100.0 30 .................................... GGGCTGTCCACGGCTTGCCGTCCTGCACGG 430862 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.9 30 GCTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : AAAATCTTCTTCCTTTATATTAAGATAATCAGCCTCACTCCCCATACCTATGCTCGCACTTTTTCAGACGGCTTGATTTTAAGCTGTAGGAGACCTTTGCAAAATCCCCCCAAAATCCCCTAAATTCCCATCAAGACATTTAGGGGATTTTGGGGGGATTTTGCAAAGGTCTCTATTTATCGAAAACCCGTTATGTGGTCGAACAGAGCTTTGGTACGCTGCACCGTAAATTCCGCTATGCGCGGGCAGCCTATTTCGGGTTGATTAAAGTGAGTGCGCAAAGCCATCTGAAGGCGATGTGTTTGAACCTGTTGAAAGCGGCTAACAGGCTAAGTGTGCCTGTTGCTGCCTAAAAGGCGGCCCAGATGCCTGATTATCAGGTATCCAAGGGGGATTAAGGGGGGGGTATTTGAGTAGAATCAGTGGATATTTGAAACAAAAACAGCCGAAAATCTTTAATTAGATTTCGGCTGTCGGGAAAAAGGAATTTTGCAAAGGTC # Right flank : GCCTCAGCGGGGAATCCTTATTTTATAAGGATTCCCCGCTTTCTTTTGTCTAAAAAACGGAGATTAGAACAGCAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTGAGTTCACCTAAAAGCAGTTTCATGGCGGCAAACTGCTTTTCTGTTACTTCCAAACAGCGTATCGAGCCTTCTTGCGGCAGGTTGGCGCATAGTCTGTTGTGGTGTTTTTGTAACGCATCTCTGCCTTTAACAATCCGGCTGTATACGGAAAGTTGCAGCATTTGATAGCCGTCTTTCAATAGGAAATGTCGGAATTGGTTGGCGGCTTTGCGTTTGGCGACGGTGGTAACCGGCAGGTCGAAAAAGACGATAATCCGCATAAACTTTGCCTCACTCATATTGATATTCTTTCAAAGGCAGGATTTCGGGCAGTTTCAGCAGTTTGACGTTTTTGGCGGCGAGGCTTGGCTGGAATGAGGCCATCATTTTGTCTATGGCTGCCAGTGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 2 1708319-1706568 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031255.1 Neisseria elongata strain M15910 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1708318 33 97.0 33 T................................ ATTCATGTCGGGGTCAATTGTTCTGACAGATAA 1708252 33 97.0 34 T................................ TACATAAATTATTTTTCAAAAAAACTGTTGACAT 1708185 33 97.0 33 A................................ TAAATCACCTCAATTTTTAAAATTATACTGCTT 1708119 33 97.0 33 A................................ CCGTCAGGCCATGTTTGTATTTTGCTTGTTTGG 1708053 33 100.0 33 ................................. AAGTGTCGGCGAAATGCCGTAATAGAATGAGAG 1707987 33 97.0 33 T................................ CCTGTAATCGCCAAACTTGCGCCTGTTTTATAT 1707921 33 97.0 34 T................................ ATTTTGGCACTTCATCAGAATTTTTACTTCACTC 1707854 33 100.0 32 ................................. AGGCTTTACTATTCCTGAAGGCTCTTCCTCTT 1707789 33 100.0 33 ................................. TTCTATGTTCATATTTTTAAGCGTTTTGCTGTT 1707723 33 100.0 33 ................................. AGCCGATTCCTGATACAGCGGCGGAAACGGAAT 1707657 33 100.0 33 ................................. TAAAAGCAAAGTTTCCAGTGCAGTACAAACAAA 1707591 33 97.0 33 T................................ TTTGAATTTTAAAGAGTTCAAAGTGTTTGATAA 1707525 33 97.0 35 G................................ AAATGTGTAGTTGTAGACAGATGTTAGTCCATGTA 1707457 33 100.0 33 ................................. CTCAATCGGAGTTGGGAGATGTTGATGGTTACA 1707391 33 97.0 33 T................................ AATGTTGAATACGCTAAGATGTTTTTTATCGGC 1707325 33 97.0 33 A................................ TTCAACGGTAGTCAACCGGATTTTTAGTTCCCC 1707259 33 97.0 33 G................................ AAGACAATGGGTCGAGTATGCACAGGAATCTTG 1707193 33 97.0 32 A................................ TCCATCCGCCATAAACGGATGGGGGATACCAT 1707128 33 97.0 32 .............A................... GACAAGCAAGACCAACGTTGCCTGTTCGGCGA 1707063 33 97.0 32 .............A................... ATATCAATATCCTTTAGTTAATGCAATTTTTC 1706998 33 93.9 32 G............A................... ATCCACCGCCTGATGCAGCCTGCCGGCAATCA 1706933 33 93.9 34 G............A................... GACGCCGAACGCGGGCGGTATGTGCGGTTGTCGC 1706866 33 97.0 33 .............A................... AATACACGCTTCATGCCATGAATGGCATTGCAA 1706800 33 97.0 35 .............A................... TATGACATTTTCGGCTTCGGCATCACACGCAAGGG 1706732 33 97.0 32 .............A................... AAGGCCGCTGTGTATCAGCACGTCGGCCAGCG 1706667 33 93.9 34 G............A................... CCTGCCTTTGCGGGCAGGGATGTTTGTTGGGTGT 1706600 33 93.9 0 .............A..................T | ========== ====== ====== ====== ================================= =================================== ================== 27 33 97.2 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCAGAAGGACAGGCAAGGCTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGTGTGCGCGTACAGTATTCGGTGTTTGAATGCGACATCGCGCCCGACCAATGGGTTGTTTTAAAAGACAAACTCTTAAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAGCCGGCAGTAGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTTCGGTTCTCATGAAAATGCTGCAAGGTTGGCGAACTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGTGGGTGTAACGGAAAAGGCTGTGTTATACTCGCTTTCGCGCTTTTCTTGGGAGCTTGGCGAAGTCGGGGCTGCGAAACCTGACGGAGCAAGGCTTTTGAGAGAGGC # Right flank : TCTGAAGTGGCGTGAAAATGTATTGGCAGCTGTATATTAAAACGATCGCCACCTCCTGTTTCGAAGAGGTGTCTTGATCGACCGCATCCAAACAGCCATAACCAATAAATATCCTCGCTGAAATGATCTGCTGCTTTGTCAATATTTGAGGCGGTGCGTATAATCCACGTTTTTATCACTACCGAACGAGGGGATTCGTCATGAGCGAAATCCAAATTGAGAAAAAAATGAATGTCGAGAGCTTCAATCTCGATCACACCAAAGTAAAGGCCCCTTATGTGCGGCTGGCCTGTGTGACCGACGGCGATTTCGGCGACAAAATCTACAAATACGACCTGCGCGTCTGCCAGCCCAATCAAGAGCATATGGAGATGCCGTCCCTGCATTCGCTGGAACACCTGATGGCCGAATTGTCGCGCAATCATTCAGATAAAATCGTGGACATCAGCCCTATGGGTTGTCAGACCGGTTTCTATATCGCCCTGTTGAACATGGGTGAT # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.30, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //