Array 1 3327-3791 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOK010000090.1 Trichocoleus sp. FACHB-90 contig90, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3327 37 100.0 37 ..................................... AGGTAAGTACAAACTGGAATGCGACCCAAAGACTGGG 3401 37 97.3 35 A.................................... ACGCAAGCTGAGTACGGGGAGCGCTGGACGTTCAC 3473 37 94.6 34 .................A...G............... ATTGTGGATCATAAACTCACTGCGCCTTATCCCG 3544 37 94.6 32 .................A...G............... ACAAGCTTCTGGGTTGTGTCGCAAAAAGTAGA 3613 37 89.2 32 .............T.A.C......C............ GCGCCCCTCCAGTCGGTTTACTTGCGGTTTAC 3682 37 100.0 36 ..................................... GGGGATATGCTCGCGATCGCATCTAGTATTCGTTCG 3755 37 83.8 0 ..........................G....G.TTGT | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 94.2 34 CCTGAAATCGATTCCTGGGACAGCTAAGGGTTGCAAG # Left flank : AAGGGCATCGCGTAAGCGATCGCAATGACGAGGATGGCTCTGATTTGCACGCCCCTAAAACTGTCCGTACATCCCGATGCGAGTCGGGAATTGGGATCTATTCTAAAAGCTTAGGTCTGATGCAGGTAAGTGCTGGTTCAGGGGACTGCGAAGAATTTCCCCCTGCTACATCTGGGATTGGTGACACCAGTAGCCAACCCTCAACCCTCAAGACTGGGGCAATAGAAGCTGATTCAGAAACAACTCAGTGCGCGAATGTGGAGGTGTTTTCAAGCAACACCGCCGAAGAACAACCCCAAACTAGCTCTCACAAAGAAAAGCGTAAGCCTATCACGAGTCAGAAGATTCACGCTAAGCCAAAAACTCTTACTCCGTCTGAGGTTGGCAATAATCGCGAACCACCCACAAGGAAAAAGGCTGAATCTAAAATCCGCGCAAGGACTAAATCCGCGCAATCGGAGTCTGCTATTCAGTTATCGCTTGACCTGTGGGGGACTGCC # Right flank : TTAAGGTGGGATTGTCTTTGGACAATCGGGAACACTAAACTGTACCCGTTGGTTCTTTGCCCATGTTTATCCCTAAATCTGGTCTAGCTCTGCTCCTCCTATTCTCTACGCTACTAGGAGTCACCAAGGCAACCGCTCAACCGATCGACGGAAACATTTGCCCTAGTGACTCCCAAATTTACCGCATGGCAAGAAGCCGGCATTTCCACCTGTACATCTGCTCCCAAAACAACCAACCTACTTACTATGTAGGCAATGCTACGAATGGCAGCAGCAGCATCACCCTCCCCCTGGCATCCGTGGAAAACGAAGTTTACATCGCAAAAAATCAAGGTCACTCTTATGTCTTGGATTTCGATCGCCAGCGATTAACCGTTGTGATGCCAGGTGGCAAACAAGTTACCCAATCCATCGAACAGGTTTACGACTAGATTGAGGCTAATTTTTGACTACTGGCGATCGCGCCTTTGAAGCCGCCCCAATCGATCGTTCAACGCCAC # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTGAAATCGATTCCTGGGACAGCTAAGGGTTGCAAG # Alternate repeat : CCTGAAATCGATTCCTGAGACGGCTAAGGGTTGCAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 142417-141097 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOK010000089.1 Trichocoleus sp. FACHB-90 contig89, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 142416 37 94.6 32 ..........C...G...................... ATCCTAGACCCTAACAACGATGATGAGTTAAC 142347 37 94.6 34 ..........C...G...................... AGCTCGCGTGGCGGTACGGGATTGTAAGAGTAAG 142276 37 94.6 34 ..........C...G...................... CTTGAAAGGGAGAGTTGTTCAGCTCGAATCGGAG 142205 37 94.6 37 ..........C...G...................... CAGAGATCAGCGGGTACTAAGGCTACCGGGAAAATAG 142131 37 94.6 34 ..........C...G...................... ACTCATTTCAGGATGGCGAAGTTATAAAAGTTGC 142060 37 94.6 32 ..........C...G...................... TTTTGAGCATTCTGGAGGCGAGATTAGGAAGA 141991 37 94.6 35 ..........C...G...................... AATGACAATTGCTTGTGTTTCGACAGTTACCCAGC 141919 37 94.6 34 ..........C...G...................... TCAAAGAAACACTCGCCAACCAATGGGGCATTAC 141848 37 100.0 34 ..................................... CACGCGCTACAATCTTTTCTTGCTCTGACAATTT 141777 37 100.0 34 ..................................... TGGTGTGTGGCTTATACCGATTGTACTAGGAGAT 141706 37 100.0 33 ..................................... AACGGTGAAACCACGGAGCAGCAAGGATTTTGA 141636 37 100.0 34 ..................................... ACCAAATCGCGATAGCAAACCGACAGAAGGTACA 141565 37 100.0 34 ..................................... GAATTATTATTCGCTGACTTGCAAGAGGGGCTGC 141494 37 100.0 37 ..................................... AGGGCGCGGTAGTCCATAGAAAATCCCTACAGTAAAA 141420 37 100.0 33 ..................................... ACAGCAAAAGGTACATAATGAGGAAATAGTTTT 141350 37 100.0 32 ..................................... TGAAAAGGGTTTCAATCCTCCAGAGGCCTATA 141281 37 97.3 36 .........................G........... TCCTTTTGGTATTATTGGAACTATTCCCAGCGGTGA 141208 37 100.0 38 ..................................... AACTTGTAAGAATGTCTACTTGATGTCTACTTGTCCAA 141133 36 73.0 0 .T............TT-.G..G.C...C...G....T | T [141108] ========== ====== ====== ====== ===================================== ====================================== ================== 19 37 96.2 34 GCCGGAAAACTCTTAAATCCCTATCAGGGATTGAAAC # Left flank : GTTTGGAATACTACCAAAATATTGCCCCAAGAGAAGTTTCCTGGGTTGCTTCTTAATGCTTTGTTTGGTTATACAGATAGGCTTTATCGGGTGCAAGCGATCGCTTACGTTCTATTTTTAGTCAGCATCGGCGGCATTTATTTGAACAGTTTAAAAGGTCGCCCCAAGGTGGCAGCAGCGAAGCATGAATCAGTGCAAAACACAATCAGTTCCGGACAGGAATAAACTGTTGGTTTTTTGTTCGCCGCTTGCGTCAACCTATAGGTGTTTTTTTGAAAGGGTCGAGTTTTGTGGCTGAAACGCTTATCCCCTTTGAATTTGAGGCGGATGACACCATTCAAGGGGTTGCCGCAAACGCTGCCATCTACACTGTGGCTTGCTTTGAAGGGATTTATAAAAATGTCATCTTGACAACCCGATTCCTGAAACGGTACATTGACTCTAGGTTGACACAAACGAACCTTGAAAACTACATATATCAATACTTCCAGAACCCGGCA # Right flank : GATAGGGGCGCTCATCTTGTAGCGTGTAAGATTAACCATCGGAAATTTGGGGAATCAGTGCCAACATCTTCTCAAATGCCCAATTTGGCGGTAAGTTGACATTGCGGGGGATGGGATGAGACTTTGGCATGAATGCAAATCAAGATTTAATCAGAGCAGCTAAAAAGGGCGACATCAAGCGGATACAAGCATTACTCCACCAAGGCGCTGATGTCAATACTACCGATAGAGAAGGCACCACTGCTTTAATGTTTGCCGCCCAAAACGGCAACACCGAAATTGTACGGATGTTGCTAGACAAAGGCGCTAATATCAACCTTGCCAGAAAACAGTATGGTTTGACGACCTTGATGTTGGCAGCTGCGGCAAATCAGGTTGACGTGGTGCAAACTTTGGTGGCTAGAGGCGCTGACACGAATGCCAAAAACGAAGATGGGAGTACGGCGCTGATGGTAGCGGCGTTCAAAGGTCATGCTTCCGTGGTGCAAATTTTGCTGGAT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGGAAAACTCTTAAATCCCTATCAGGGATTGAAAC # Alternate repeat : GCCGGAAAACCCTTGAATCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 18235-16918 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOK010000005.1 Trichocoleus sp. FACHB-90 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 18234 37 100.0 33 ..................................... TACGACGATATGACCACAGACAGAACCTATGGG 18164 37 100.0 33 ..................................... AACCGACTTGGCGGGTAGACTTCTAAAACTTGC 18094 37 100.0 33 ..................................... GTCGCAAGCTCCTTGAGTTGGAAGAGGTACTGG 18024 37 100.0 34 ..................................... GCTCAAGATTTCCGCTCTATGGGTGTAAATGTTG 17953 37 100.0 34 ..................................... CCAGCATGAAATCTTGAGCTACCCGTTTTGTCAA 17882 37 100.0 35 ..................................... AGGGTGGATGCTTCGTGGAAACTGCAAAATTCTGC 17810 37 100.0 34 ..................................... TCTGAGTATTATTATAGTTTCATTTGTTCGAGTT 17739 37 100.0 34 ..................................... ACTAGCTACTTCTACTGGTGACTCGTCGGGTGAC 17668 37 97.3 34 .........G........................... ATCCAAGAAATCCGCGAACAGTTCCACCGTGATC 17597 37 97.3 34 .........G........................... ATCGAGCGCGACATCACCACACTTACAGATGACG 17526 37 97.3 34 .........G........................... CATCTGGATCTATCATAGTATGGTTATGCGGTGG 17455 37 97.3 33 .........T........................... ATTTATGTAGGCGATCGCCCCGAAGATCGGGAG 17385 37 97.3 34 .........G........................... AAGAATGACTGGACAAGGAAAGAAACAAGCAGGG 17314 37 97.3 36 .........G........................... CGCGATGACGATTATTTTATCCGTCTCTGGCAACAG 17241 37 97.3 33 .........T........................... AGCTCTTCAACACCTCGGCGATCAAGATACTGA 17171 37 97.3 34 .........T........................... ACTAATTGAATTTAATATATTAGCAATCTTCAAA 17100 37 97.3 35 ...A................................. TCGCAGGTGAGGAGCTTGTCTGGTCTATTTGTGTC 17028 37 100.0 35 ..................................... CATCCTTGTCTTGAATTATTAGTAATATCTCGCAG 16956 37 94.6 0 ................................T...A | A,T [16923,16945] ========== ====== ====== ====== ===================================== ==================================== ================== 19 37 98.4 34 GTTGAAATTCCCATAAATCCCTATTAGGGATTGAAAC # Left flank : GCAGAGCCTCGTCCGACTTCCTATAAAATTGTCCCAGTGGAGTCTCCAGACGATACCCAGAAACAAAACTTTGCTGGTTGGCTGGGTTGAGGCGTTAAAATGCGCGATCGTTTCAAGTTTTGCAGAAGATGATAATGTGCGATCGCGTTTGGTAAAGGTAATTTGGTTGGCGCTTTTATTTCCAATGCGATCGCTTCAAGGTTCTGCACATTGACGGCAAAATGTCAATTTATACTACAGTGTTTTTTGTTAGTAGCGTCAACCTGTAGGTGTTTTCCCAGAGGGGTCGATTTTTGTGGCTGAAACGTTTATCTCGTCTGGGTTTGAAGGCTATTAACCTCGATTTGAGGTGCATAGCCTGAAACTCTTATCAGCAGAGCGTTTGACCCAATTTCTAAAAGTCACCCCTTGACAACTCGATGCCTGAAACGGTACTTTGTTTATAGTTTGACGCAAACGAACCTCGAAAACTAAATATATCAAGGCTTTCAGTCCCCTTT # Right flank : ATCACAGGTATACTTACCACAAACTCTGAAAACTTCTTTACTCACTTCCTAGTGCGATAAAATTTTGCAAGTTGAGAGGGGGAAAATCCCAGGAAATAGCCAATAATTACAATCTGATTAATCAAGGTAGTTTTTAACACCCCAAGTTTTTGCCAACGACGTGCAGAAGTCAACACGGAAGCGGGGACAAGAGTAATATTTCCCAAACGTCTCAGGCGAAGGATAAATTCAAAATCTTCCATAATTGGGAGATGGGGAAAACCCCCAATCTCGTGAAAAACCGATGCTTTCAAAAAGATTGCTTGATCGCCGTAGGGTAGATGCAAAAAGCGCGATCGCCAATTTACCATCTTTTCTACCAGACGAAGCGATCGCATCCGTGCATCAATCTTCAACTCAAACGCACCAGCAATTGTACCTCTTTGGGCTAATGCTTGGCGAACCATAGCATCGAAACCAACAGGTAAACGAGTATCCGCATGAAGAAATAGCAGAATATC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTCCCATAAATCCCTATTAGGGATTGAAAC # Alternate repeat : GTTGAAATTGCCATAAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 34408-37416 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOK010000103.1 Trichocoleus sp. FACHB-90 contig103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================================================================== ================== 34408 23 100.0 52 ....................... AAGAGCAACTTGTATACAGTGAGGAAGATTCTGAAGAGCTTTCCGCCAACAT 34483 23 100.0 48 ....................... CGCTGACTGAAAATCAGAAAATTCTAGGGTAACACTTTCCGCCAACAT 34554 23 100.0 51 ....................... CGATCTGGATGTCGAGTATGTCACCAACCGCTCAGGACTTTCCGCCAACAT 34628 23 100.0 50 ....................... CTTCCTCCAGTTTCCCCAGTGGAATGACTTTGCTGTCTTTCCGCCAACAT 34701 23 100.0 50 ....................... AAGACTTCCAATACAAAACCGCTCACAAATTGGTGACTTTCCGCCAACAT 34774 23 100.0 49 ....................... CCTAATAATAGCTCTTCAAGTAGGCGCTTTGCTGCCTTTCCGCCAACAT 34846 23 100.0 50 ....................... ATTCCTAGATAAGCGTCCCACGGCGGTGATAGAGCCCTTTCCGCCAACAT 34919 23 100.0 51 ....................... ACCAAAGAACCTTACCGGAACCTGTAACCCTTGATATCTTTCCGCCAACAT 34993 23 100.0 52 ....................... AACAGGTAATGGCAATCCCACAATACCCACGGTTTTATCTTTCCGCCAACAT 35068 23 100.0 51 ....................... CCAAGATACGATACCAAAAAAAGCACCGCCTACTCCACTTTCCGCCAACAT 35142 23 100.0 51 ....................... TTCTTTCACAACAAAGAACTCAAAAAGCTTCTCTAGACTTTCCGCCAACAT 35216 23 100.0 54 ....................... GCAACGGTCGTGGGGGTGGATGACTGCTGGTGCTTGGTCGCTTTCCGCCAACAT 35293 23 100.0 50 ....................... TCCACCTGAGAAACTATTTCTGTGGCGCGTTCTAAACTTTCCGCCAACAT 35366 23 100.0 49 ....................... ATATGTACATACCCGCATCCGCATTAACTACTTGCCTTTCCGCCAACAT 35438 23 100.0 49 ....................... TTTCTACTATAATTTGCGTGTCAATTAATTGACTACTTTCCGCCAACAT 35510 23 100.0 51 ....................... TTTCAGGTACTTGGTCAGTTGGTGCCAAAAATGTTCGCTTTCCGCCAACAT 35584 23 100.0 48 ....................... TCGACACTGCCGTAGGTATCTCGCTCCAGGCGGACTTTCCGCCAACAT 35655 23 100.0 50 ....................... CTTTACCCTCAAGTCCATAGTAGAAAACAAAGGAAGCTTTCCGCCAACAT 35728 23 100.0 53 ....................... AGATAACACGTCGCTCCTCTTGGGCAACAGACGCTTTAACTTTCCGCCAACAT 35804 23 100.0 47 ....................... GGGTTTACTAAGAACATGAAGCTTTTGGCTGAACTTTCCGCCAACAT 35874 23 100.0 49 ....................... TCTACTGATAGCTCTGGCTATGATCCATTAACTAGCTTTCCGCCAACAT 35946 23 100.0 50 ....................... ACCCATCGATAGCTCAGACCATCGCCGCCATTTACTCTTTCCGCCAACAT 36019 23 100.0 50 ....................... TACAGGTTCATCTTTGTTTTCTTTATATTCATCTGGCTTTCCGCCAACAT 36092 23 100.0 54 ....................... AGTTAAGCCATTTACCCAAACAGTTGTATCTTTTCCTATCCTTTCCGCCAACAT 36169 23 100.0 51 ....................... TACACAGGGACTAACTTATAATGGCTAATATTTCTAACTTTCCGCCAACAT 36243 23 100.0 51 ....................... ACGATTTCATCCCTGATATGCTTTTGCAGCGCCCGCACTTTCCGCCAACAT 36317 23 100.0 50 ....................... GCGAGAAATTATTCGCCAGGAGATAGGAACCCAAACCTTTCCGCCAACAT 36390 23 100.0 52 ....................... ATCTCTCTTTCTCCTACAGACCCTATGCCTAATGCAGACTTTCCGCCAACAT 36465 23 100.0 51 ....................... GTAAACCGTTTTCTTTTCTTGTTCCATTCTTTGTACACTTTCCGCCAACAT 36539 23 100.0 53 ....................... TTAAGAACGTAAACAGACATCTTGTGTACCATGATTAAACTTTCCGCCAACAT 36615 23 100.0 50 ....................... ATCGCACATCAATATGAATTAGATCGGGATAATGAGCTTTCCGCCAACAT 36688 23 100.0 53 ....................... GCAAAGGAGACTGGCGACAGAATGGAGCGCCGGGGGGGACTTTCCGCCAACAT 36764 23 100.0 51 ....................... AAATTTAAACCACACGTTAGTTTGTGGTTTAACCAAGCTTTCCGCCAACAT 36838 23 100.0 51 ....................... ATATAAAAGCTTTCAATTACCAGAAAGATAATATTATCTTTCCGCCAACAT 36912 23 100.0 50 ....................... TATTCTTCACCTGTCTGCCCATCGTTATACGCTGTCCTTTCCGCCAACAT 36985 23 100.0 50 ....................... TTTTCCACCTTTTCACTACGTGTACCACCTTCAAAGCTTTCCGCCAACAT 37058 23 100.0 55 ....................... GGAAATAACGGGTAAGTCTTCTATGCGGCGAATCAGCTCAGCTTTCCGCCAACAT 37136 23 100.0 47 ....................... ATGCCGATTTTCATTAATACACTGAAGCGCCAGCTTTCCGCCAACAT 37206 23 95.7 91 ........A.............. AGTTTTAAACCTCAGGTACAACTATTTTTTCAGCAAGCCGATGAGCGCGGTATACCGCGCTCATCAGCATAAATAAGGTTTCTGCCAACAT 37320 23 82.6 51 ........A....C....T...T ATTGTTTAATTCCCATCAATCCGCAATTCCGGGTTGAGTTTCCACGAACAA 37394 23 73.9 0 ..C..T..T....A.G..A.... | ========== ====== ====== ====== ======================= =========================================================================================== ================== 41 23 98.8 52 AATCCCCGCAAGGGGACTGAAAC # Left flank : TTTACGATGTACCAGATACTAAAGCCGGGAATAAGCGGCGCACGCGGTTGCACAAACTGCTTTCTGGTTATGGAAAGTGGATGCAGTATAGTGTGTTTGAGTGCTTTCTGGATGCCATGCAGTTTGCTTCGCTGCAAATCTCTATTGAGAAGCTGATTAAACCCGAAGAGGATTCGGTGCGAGTTTATGTCTTGGATGCAGGTGCCGTGAAACGCACGATTACTTACGGTTCGGAACACCCTCGTCAAGATAAAATTATCATCCTATAATTGGAAGAGCCAAAATTTTCGTAGGTCGAAGCGGGGGCGAAAACCTGTGCGATCTCACGAAAAACGCCAGAACCTTGATAACTAAATAGTTTAAAAGTTTTCAGTAGCCTCGTTATTGCTAAAAATCTGCAATAGCGATGGCTGAAATGAGGTTTTGAAAGAGACTTACGAAAACTCTCTTTTGAATCCTCTTGCCGTATAAGTTTCAGACGGCGCTCTTTCCGCCAACAT # Right flank : CAGTTCTTAATATAGAATTTCATAGCCCCGATTACACTTTCAATTTATTTAATCCCTGCCGGAAGATAGGACTAATGCTCCCGACTAATAGGCAGGTTATATTTTACATCGGGCAATTGAACCGAGCGCTGGTCGCACAGCCGCAAGGCTCGAACCACCAGCGAGTACAATTGCAGATATTCAATTTGAGCGGTATCAAACCGATTCAAGTCAAACTCTTTAGTGACAGCGTAGAGTTCCCGACTCAGATTGGCAGCTTGCAGCGGTAAAGTTTTAGGCAAAAACCGAGCAAGGTTACGCCAACTAGAAGCGATCGCGTCTTTTGCCCCTGGATGCAATTGAATCTTCCCCACCTTCGCCACATCCCCCATTTTCCATCCACCCGCCCATGCCGAGTGGTGACGACCCGCGGCCATAATTACAGCATGGAGAATGCAGCTAATTTGCTCAGAGTCGGCATTAAAGCGATCGCGCAGCAAAGGTAACAGGGAAGTTTTCAG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 56228-54583 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOK010000103.1 Trichocoleus sp. FACHB-90 contig103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================================== ================== 56227 23 100.0 50 ....................... GTAGCGCCGCCTTGCTCCACCTCTCTCTTCCCTAGCCTTTCCGAAGCCTT 56154 23 100.0 52 ....................... CCATCCTTCCTCTCATTTACTTAACTAGGAAAGGTAGCCTTTCCGAAGCCTT 56079 23 100.0 51 ....................... GATAAAAGCCTTTGAAGGCGAAGAAGCTGTCCGATTACTTTCCGAAGCCTT 56005 23 100.0 51 ....................... TTGATGATTCGTCCAAAACAATTGCATCAAACCTAAGCTTTCCGAAGCCTT 55931 23 100.0 52 ....................... GCTTAAACACCACCGACGCTCTGAGTTTTGCTCAATGACTTTCCGAAGCCTT 55856 23 100.0 53 ....................... TTCGTGGAAATCCCAGCCATTCGCCCGGATGTTTTCGATCTTTCCGAAGCCTT 55780 23 100.0 50 ....................... ATGGACTCATTTGGATAAATGATATAAACGACAAAACTTTCCGAAGCCTT 55707 23 100.0 53 ....................... TTGCAGGGTACGGTAGGTTGTTCAGTGTTGTACATTATTCTTTCCGAAGCCTT 55631 23 95.7 48 .....T................. GATACTATTTGAAGCGTAGGAGAGTACAACTATGCTTTCCGAAGCCTT 55560 23 100.0 50 ....................... CATATCAAGTCTCGCCTTGTTCCTCCATTCCTCTATCTTTCCGAAGCCTT 55487 23 100.0 49 ....................... GATTCACGTTGCCTCCTTAGCAGCGAGTGTCTGAGCTTTCCGAAGCCTT 55415 23 100.0 50 ....................... CCGGTACAATCTCCTGGGCTTGCTGTTCGAGGTATTCTTTCCGAAGCCTT 55342 23 95.7 49 ..............A........ ATCTATGAGAATTCTCTATATATAGATTACTTTGCCTTTCCACCAATAG 55270 23 95.7 50 ........C.............. AGTTCCAGTCCTTGCACTTTGGAAAAAAAACCGAAGCTTTCCACCAATAG 55197 23 95.7 54 ........C.............. AGATATCGGCAACCCGTTCAACCGTATCGGGATCGAATAGCTTTCCACCAATAG 55120 23 95.7 50 ........C.............. TTGCCTAGTAGGATGCGGATTTCTCCAGCGTTGACTCTTTCCACCAATAG 55047 23 91.3 49 ........C.....A........ AAGGAATCAAAATCGAAATACTTTGGCACATTCTCCTTTCCACCAATAG 54975 23 95.7 50 ........C.............. CGGAGAATCTGGTTTCCGTCTTGAGACAATGCTTGCCTTTCCACCAATAG 54902 23 95.7 49 ........C.............. CGAAGAGTAGTTGAACCTTTGGCTTTATCGTTGAGCTTTCCACCAATAG 54830 23 95.7 51 ........C.............. CTGCTAGGTGTAGCGCTGACTCCAGCTCCTGGCCCGCTTTTCCACCAATAG 54756 23 95.7 52 ........C.............. ATCGCCTTCCTCATCCCAGGCCAATACGGGTAATTCTTCTTTCCGCCAATAG 54681 23 87.0 53 ........C..A..A........ GATCGAATCAACATCAATTGTCAAAATTTTGACAATTGACTTTCCGCCAGGAT 54605 23 82.6 0 ........C.GT...G....... | ========== ====== ====== ====== ======================= ====================================================== ================== 23 23 96.6 51 AATCCCCGTAAGGGGACTGAAAC # Left flank : CAGATAGGATTGGATTTTTCAAGAAGACAAAAGCCCTCTGCCATTGTAAAGCTGCTCTAAACCAGAAAACCAGAAACAAGTTTAGTGAGCAAGCTGTATTTAAGCTTACGTTAGGCCTGAAACTATAGATTTATTCTTGATCTGTGAACCCTAATGGAGTTGTTGAGTAATAAATAATTTCATAATATGGACTGGATGCAGGTGCAGTGAAGCGCACAATTGTCTGCGGTTTAAAACAATTTCTTCAAGACAGAACTATCATCCTATAATTAAGTAAGCTAAAATTTCGTGAGTCAAAGCGCGGGCTACAATCCCAAGGGTGTCACGAAAACCGCCAGAACCTTGACAAATGAATAGTTAGAGCGTTTTTTCAGTCGCTCAATAAATGCAATAGTTCGCAATAAATGTAGCTGAAATGAGGTTTTAAAAAGGACTTACGAAAATCCTGTTTTGAACCCTCTTGCAGTAAGTGTTTCAGGTAGCGGACTTTCCGAAGCCTT # Right flank : TACCCCGAATACTGCAAGGCAACCACTTTTAAACTTTCCGTTAGGGCTTTCCCAAGACGAAATTCGGTGAAGAGACTGAAACTGTTGACCAATGCCATAAAATTTCAGAAGATCCCGTTCACTTTCTGCAAATTATTTTTCATTTAATAGCTGCTCAAAACCAAAAATCTTACATCTTTTCTCGAAAACCAGATAACCAAAACTTAATCATGCTCAGCTTAGCTTCTTTAGGTTTCAGTTAGGGTTAAAGCTATGAGTTGACTGTTAAAGTGTAAGCTCTAATTAAGTCAAACCTTTTCTGGTTGAGTCAAAGCCCGTCGCGCTAACTTAGCATAAGTTTTAACCGTCTCCGGACGCATTTCTAGATCCAGAGCGATCGCCTTTAACGACTCCCCCCACTCCCGGCGTGCCAAAATAGTAGCCCAAGTTTCAGCAATCTCAGTAGCACGAGAACCACCCGTGCGCTTTCTTTGAGCGATAAACTGCTCTTGTAACTCAGC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.27, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 70972-68212 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOK010000103.1 Trichocoleus sp. FACHB-90 contig103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================= ================== 70971 23 100.0 50 ....................... GAACAGCTTAATGGATTACTAGATCTTTATCTGTGTCTTTCCGCCGACAT 70898 23 100.0 51 ....................... GTGAAGCAATCCTCTCTAAACTGCAATATCTAACCCGCTTTCCGCCGACAT 70824 23 100.0 47 ....................... ACCAAAGATGTCAGGGATGCGGCACCCGATGGTCTTTCCGCCGACAT 70754 23 100.0 54 ....................... TTCCAAAACGAGCGGCTAAAGGTGCTGTCGCATCACGCAACTTTCCGCCGACAT 70677 23 100.0 48 ....................... CTAAAAGTATTAGGAGAAACCGAAACAGATCCGACTTTCCGCCGACAT 70606 23 100.0 50 ....................... GCATCAAGATTGATCCCTAAATCTGAGGTTAGCTTGCTTTCCGCCGACAT 70533 23 100.0 50 ....................... ATCTTCACAAATTTGATAAGCTGCCTGGGCCTTATTCTTTCCGCCGACAT 70460 23 100.0 51 ....................... ACTTGTAGTAACTGCTGCTGCGTTCTCGTCGTAGATACTTTCCGCCGACAT 70386 23 100.0 50 ....................... TCTAATTCTTGCAGTCGCTGAGCTTGTGCCTTGAGGCTTTCCGCCGACAT 70313 23 100.0 49 ....................... AAACAAAGCCCAAAAAGAAGCGCACTCCGTCACTGCTTTCCGCCGACAT 70241 23 100.0 52 ....................... ATGCAATAAACAGCCGAGGGAGCATAAAACTGAGTAGCCTTTCCGCCGACAT 70166 23 100.0 50 ....................... AATACCTCGCCTACAGTTGAGTCAATTTTAACACCACTTTCCGCCGACAT 70093 23 100.0 51 ....................... AATTAATTCAAAAATCCAGAAATTTTGACCTGGTGGACTTTCCGCCGACAT 70019 23 100.0 52 ....................... AACGTTAGAGCGCTGGTAATCACCTCCAATCCGGGGCCCTTTCCGCCGACAT 69944 23 100.0 52 ....................... ATACTTGGCAATTATTGAAGCTGCCGATATCTGTGGGACTTTCCGCCGACAT 69869 23 100.0 52 ....................... ATAACCAAATCGTTGATGGTGTCAGCGGAATTAGTTGTCTTTCCGCCGACAT 69794 23 100.0 49 ....................... ACCAAATCTCACCGCAAGGCGTGTGACCGGGGGTGCTTTCCGCCGACAT 69722 23 100.0 54 ....................... ACAGTCATATTGCTTTTGCCTCATGTCGAGAGGACTTAAACTTTCCGCCGACAT 69645 23 100.0 50 ....................... CGGATTCTGATTTCGGGGATGTGATAGAGATTCGTCCTTTCCGCCGACAT 69572 23 100.0 50 ....................... TTTTCTCTTCAATAAAACGTGCCCGAAAATTAAAACCTTTCCGCCGACAT 69499 23 100.0 51 ....................... AAAAGGTAGTCTTGCCAGCACCCGTACTGGAAGGAATCTTTCCGCCGACAT 69425 23 100.0 52 ....................... CCAATAATTGAATTGGTATTCGGGCATAGTTTCTTCGGCTTTCCGCCGACAT 69350 23 100.0 53 ....................... CTCCCAAATTGTTAAGCGCATTTGCTCAAACCAATACGGCTTTCCGCCGACAT 69274 23 100.0 55 ....................... AGTGAGACTTCTGCTAGGGTGCATCCTACGAAGGCTAGAAACTTTCCGCCGACAT 69196 23 100.0 52 ....................... TCAAAGAGTTTCTATTTTGAAATAAATAATTAACTTGACTTTCCGCCGACAT 69121 23 100.0 50 ....................... AGAAATCTGAATATCGCAAGCGACAACTTGCAGAAACTTTCCGCCGACAT 69048 23 100.0 51 ....................... CGCCCGGTCTTTTTGTTGTGGCGTTGCACTCGGTGCGCTTTCCGCCGACAT 68974 23 100.0 51 ....................... AGCTTTCAAAGACTTGCTGAACTGATGGGTGTTGATGCTTTCCGCCGACAT 68900 23 100.0 51 ....................... TCTTCTGGCAAAAATTAAGGCTTCCTCCCATCCTTTCCTTTCCGCCGACAT 68826 23 100.0 51 ....................... ATGTATCGTTGACTATCACTGCCGATATGACAATACTCTTTCCGCCGACAT 68752 23 100.0 49 ....................... AACAGGGTGCCGTAGATCAAACACAGCCGCTTCTCCTTTCCGCCGACAT 68680 23 100.0 50 ....................... CGACAAAGTAAAGTTGTAGAGGAATTTCTTCGAGCGCTTTCCGCCGACAT 68607 23 100.0 52 ....................... CTATTTCTTCTGCAATTTCTGCTGCTAAATATCCTGACCTTTCCGCCGACAT 68532 23 100.0 55 ....................... GAGTGAGTTTGCAAACTGCGGGTAGGCTCAACTACCCGCACCTTTCCGCCGACAT 68454 23 100.0 49 ....................... AATAACTTTTATAAGTCAGATAACGCGATCGCATCCTTTCCGCCGACAT 68382 23 100.0 50 ....................... GAAAATACACCGACGATGCCGGGGCAGTGCATTCAACTTTCCGCCGACAT 68309 23 95.7 52 ......................T TTCTCTCTCCTGATAAATCTTGACTTTCTGCTCTAGCGCTTTCCGCCGACAT 68234 23 95.7 0 ......................T | ========== ====== ====== ====== ======================= ======================================================= ================== 38 23 99.8 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : ACATGAGAAAAATTAAACCTTATCCGGTCATTATTAGTCCGGTTATGTTGTACTGGCGCAGAAAATTTAAGCCAGACCATGAGGACTGGGGGACGATGAGACGAGCGCGATCGCTCCCTACCTCTTTTCGCATCCAACCCCATTACTGTTGTGGTCAAAGCCATGCGAGCCATGCGGTAAAATCTTGTGCCAATGGCAGTTTGGAAATCAAATAATTTGGAAGCAAGCAGGTCAATGATCTAAAATCAGAGCAATCATCTTATAATTAATTGCAAAAGATAAAATTTTCGTAGGTCGAAGCGGGGGCGAAAACCTGCGGGGTCTCACGAAAAACGCCAGAACCTTGACAAATAAATAGTTTCAAAGTTTTCAGTAGCCTTGCTATTGCTAAAAATCTGCAATAGCGATAGCTGAAATGAGGTTTTGAAAGAGACTTACGAAAACCATCTTTTAAATCCTCTCGCCGTATAAGTTTCAGACGGCGCTCTTTCCGCCGACAT # Right flank : CCTTGAAAAAGGTGAGCGCCCATAGTGGGGTAAATTTCCGTAACGTTATAAGCGATCGCCTTTCGACTCCCGCACAATCCGCATGACAGTATTCTTGGACAACTTCAACTGCGCGGTGATTTGGCGGTAAGACAGCCCATCTGCAACCAGTTCCAATACCTTTGATTCCTTAGCCTTTACCTCGGCGGGTATCTGCCCTGGTTGCCGTCCAAACTTCTGCCCCCTCGCCTTAGCCGCTGCCATGCCCGATTTGACCCGTTCTCGGATTAAGTCGCGTTCAAATTCCGCTAGTCCAGACATTAAGGTTGCCATCAGCTTTCCCTGCGGTGTACTCAAGTCGAACTCCATGCCAGTCTGGGCAATCAATAAAACCTTCCGTGATTGCAATTCCTGAAGAGTTCCGATCAAGTCGATCGTACTGCGTCCCCATCGGGTAAGCTCAGTTACCAGCACCGCATCGATTTTGCGGGATTGTGCTAGCGCCAAAACTTTCTGCCGCA # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 46794-53345 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOK010000056.1 Trichocoleus sp. FACHB-90 contig56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 46794 37 100.0 34 ..................................... ATTAGATATAAAAAATTATGACGGCGGAAATGGC 46865 37 100.0 34 ..................................... CAGGGCAAAATCAGCGTCGCTACCTGGGAGAAAC 46936 37 100.0 35 ..................................... GCGAAGCTTGAGAAGCGCGAGGCGATCGCAACCCT 47008 37 100.0 37 ..................................... AAGGATTCAGGGTGTGCAGACAGATGCTGAGAGTGGC 47082 37 100.0 37 ..................................... AACGACGTCAACCCAACCCAACTCAACCTCGGTAATA 47156 37 100.0 34 ..................................... TTATTAGCTAATTCTGCACGCAAATACGCGCTCA 47227 37 100.0 32 ..................................... TTCCCGTTCCCAGGCTTCAATAGAAGCATCGG 47296 37 100.0 39 ..................................... CAAATGTGCTGTGTCCCAATCGACATCAGCCCACCGTAA 47372 37 100.0 33 ..................................... GCAGCACTAAATATTCTGCCGCCAGTTTTACTC 47442 37 100.0 36 ..................................... CCGGTGCTGTCGTCGGTGTTGGTGTCCGGAACTCAA 47515 37 100.0 41 ..................................... GGTAATCTGCTCCTCAAAAACCTGAGCGCCCGCAGTTTCTA 47593 37 100.0 34 ..................................... GTGCGCTTACCAGACGGATTATTACAAAGTAAGG 47664 37 100.0 35 ..................................... CTGGAACCCCGGTGAGACAATGCGAAAAATCCCTA 47736 37 100.0 34 ..................................... AAATAGATTTCCCTTCCAACACAAAAAGGCTCTT 47807 37 100.0 35 ..................................... AGTTAATCGGCGCACCTCTAATCGCTGCCGAGAGT 47879 37 100.0 35 ..................................... GGTCAACAGGTGGTACGCGAAAGCGCATCCGTTGA 47951 37 100.0 32 ..................................... AAGGACAATTCACCGTCCACCACTCGCAACCA 48020 37 100.0 42 ..................................... ATGCAATGTTGCCAAGTTCCATCAATTCGCCATTGCCGAAAA 48099 37 100.0 36 ..................................... ATGCAATGTTTGCCACCAAATTAAGATATTCAGAAG 48172 37 100.0 34 ..................................... GGCGGGAGGCCCGCTGGCTCGAACCCATCAACAA 48243 37 100.0 35 ..................................... CAGGGATTGTGAAAGTTCCGGTGCTGATGTCAACA 48315 37 100.0 38 ..................................... CTAGGGTTGCGGCGGACTCAGTGACGCGAGGGGAGGGG 48390 37 100.0 33 ..................................... TTGTTGCGGGCGGTGCCGTTGACTCCGTAAACC 48460 37 100.0 35 ..................................... TAACCTTGCCTTGCCCAAAACAACCAATCTGTCGC 48532 37 100.0 35 ..................................... GATGAAAAAAGGGAAGAGATTGAGTCTGACGTTAA 48604 37 100.0 34 ..................................... CTACAACCTTCTTCTTAAGCGATCGCACCAGATG 48675 37 100.0 35 ..................................... GCGAACTACCTGACCGAAGAAGATAACTGCCACAG 48747 37 100.0 31 ..................................... ATTACCAACGCTCCCATCTACATGAATTCGA 48815 37 100.0 34 ..................................... AAATTGCTTGTACCGTCCCATCAACTCATCCACG 48886 37 100.0 35 ..................................... CGCATGATGTACCGCCACGAAGAGTTCAAGGAAAC 48958 37 100.0 37 ..................................... GTACACAGCAGTAACTTCAAGAGCTTTTATCCATCCC 49032 37 100.0 32 ..................................... AAAAACTTCGCCGCCGAAATTGAACGAGTGCA 49101 37 100.0 35 ..................................... GAAACCCACCTGACCAACACTGGGGCGATGAGTCA 49173 37 100.0 33 ..................................... ACCAGCCCAGCCCAGTCTCAATTGCCACCACGA 49243 37 100.0 33 ..................................... TACTATAATTATGAGGAATCTCCTGACAACAGA 49313 37 100.0 35 ..................................... CTTAGGGAATATTTAAGAGAATCTGATCCTGAAGA 49385 37 100.0 33 ..................................... ATTCTTACTTGGGACAGACGTTCACTAAATCCC 49455 37 100.0 34 ..................................... TCCAAGCCAAGCATCAAGCTTTTGTGATGCGGCT 49526 37 100.0 42 ..................................... ACGTAGATATTTTCTTAGTTCAACAACTCCTGGTGGTACAGC 49605 37 100.0 35 ..................................... ACGTAGATGTTCCTGAATATCATTTAATACCTACA 49677 37 100.0 34 ..................................... TACTAAGACGTACTCAAAATTAAAAACAGATTTA 49748 37 100.0 34 ..................................... TCGGATATTTCCGAGGCTCTTGTTATGGACGCGA 49819 37 100.0 34 ..................................... CCAATTTTTCGGCAATACATAGGTGTATTGGTGT 49890 37 100.0 33 ..................................... CGTGTATAGATATGACATTAAAATCGACTCTGA 49960 37 100.0 34 ..................................... AAAGCTGACAGAACTAAGACTCAAGAGGAAAAAG 50031 37 100.0 33 ..................................... ATAAAGTGCTTTACTATAGATACATGAGCGAAA 50101 37 100.0 37 ..................................... ATCATTAGCCCCTGAGATGAACAAAGGACTGCCAGCC 50175 37 100.0 32 ..................................... AACGTCAATGATACGATCACCAGATATCTTGA 50244 37 100.0 34 ..................................... TACCATCCACACCTATGGTGATCTCTACATTCTT 50315 37 100.0 36 ..................................... AACATGAAAAAGCATAGATTCTGCATAACTATTTCA 50388 37 100.0 33 ..................................... GCAATATGTGAGTGTTAGTGGGCATACACATAT 50458 37 100.0 32 ..................................... TTAAGGGATCTTACATACAGAAATACATTCGT 50527 37 100.0 33 ..................................... CATCTTTTAGGCGACGGATACCTTTGACACCGA 50597 37 100.0 34 ..................................... GCTTGTTGTTGCAGCTGATCCGCACACCTTCAGC 50668 37 100.0 36 ..................................... GTTGGCAGCCATCAGAGTAGCCAGCAGAGACAAGGT 50741 37 100.0 32 ..................................... AAAGACCAGGAACGTGACGCAATTGGCATCGG 50810 37 100.0 33 ..................................... GATAATAATGATTATGCTGCAATGGCTTACGCG 50880 37 100.0 34 ..................................... AGGAGGATTTGCAACCAAGAAAGAAGCCGAAACC 50951 37 100.0 33 ..................................... AGCCTCGCTTTAAGTTATATGCAGATTAGATTT 51021 37 100.0 35 ..................................... TTTGAAGAAAGAAGGGAGGGGGGGGAAGAGGAAGA 51093 37 100.0 37 ..................................... GAGCAAAAGCCAGGTAGAAATGGTGGAACTTGGCTGC 51167 37 100.0 35 ..................................... GCACATTCAGAGCGATAGTAGAGAGGCTTGATACC 51239 37 100.0 33 ..................................... TTACAACACTTACACCTAGATACTCTGGATCAA 51309 37 100.0 34 ..................................... TGCCCTCTAAGCATCTGGCAGACATTATAGGATA 51380 37 100.0 34 ..................................... TAGAGGTGATCTGATCTTCTTCATACATGGGAAG 51451 37 100.0 33 ..................................... GCTTACATACTCGGATGTAAGGTACTCAATACA 51521 37 100.0 35 ..................................... AGATGCTTAGAAGGTGGCTGGTATCCCGAAACTAA 51593 37 100.0 33 ..................................... TTCGGGAAACTGTTTGAAGTGGTACGCCCTTTA 51663 37 100.0 35 ..................................... AGACGCTTACCTAATCGAATTTTGGGTACGCCTTG 51735 37 100.0 35 ..................................... AGGGTGAGCAGAAATATATGCCCACTCTTCCTCTG 51807 37 100.0 38 ..................................... CGCAAAGCCAAGCTAGAGGCGGCGATGCGGGATTTAAC 51882 37 100.0 34 ..................................... GAGCTTGGTGGACTCTAATAGCTTGACAAACTTA 51953 37 100.0 38 ..................................... AATCAGGAAGATTGGGAGAGCTTCAAAGAAAAAACTGA 52028 37 100.0 32 ..................................... CCCATCAATCCGGTCTACAATTCCCGCGATCG 52097 37 100.0 33 ..................................... AGCTAGAAGACTAAGAGGTAAGCTTACTATCTC 52167 37 100.0 33 ..................................... TTGTGGGCAGAGTACAGAAGGGAGAAAACACTA 52237 37 100.0 34 ..................................... CCAGGTTCATGTCTGAGTGAAGGTCAAGGGGAGT 52308 37 100.0 37 ..................................... TGAACATAATCATTTATGCCATCAAAGAAAGTCACAA 52382 37 100.0 35 ..................................... GTAATCACTCGCTAGTTGATAGCTGTGAGGCTTGC 52454 37 100.0 34 ..................................... ATAGAACTGTGTCGCTCGACGAAGACTATTGCAA 52525 37 100.0 37 ..................................... TCGGAGTTCTTCGAGGCGATCGCGTATTTGCTCCAAG 52599 37 100.0 34 ..................................... ATCAAAGACCCTACGGCGGATCTCAAAAAGTAAT 52670 37 100.0 33 ..................................... ACAACCATAACGCCGCATTCTTGAACCGTACAA 52740 37 100.0 33 ..................................... TGAGTAAAAGAAAGCCCAGTATTTTCATAATTA 52810 37 100.0 35 ..................................... AGACGCGCCCATTATTGCAAGCGGTAACTTCACTT 52882 37 100.0 34 ..................................... AAAGGCAAGGATTGGACATCTCTTAAGTTTTGCT 52953 37 100.0 34 ..................................... AAGTCTGAGTATGCCCCCTATTTTGGATACGTCC 53024 37 100.0 35 ..................................... TCCTCCGATGCTGCGGCTTCCTGCCGCATCGCGTT 53096 37 100.0 33 ..................................... GAGTACAAGCTTTCGCACACCTCCATCAACTCT 53166 37 100.0 34 ..................................... GCTGGTGAACAACACGGCGATCGCTCATGCACGA 53237 37 100.0 35 ..................................... CGTACCCACTTTAAATCTGAGTGTGCGCTGGGTTG 53309 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 92 37 100.0 35 GCCGGAAAACTCCTAAATCCCTATCAGGGATTGAAAC # Left flank : AAGAGTTCCAGCGCGTCAAGGGAACCCTAAGTATAGGCGATCGCGTAATCAAGTTGACTGATGCCAAGTTAACAGGCGACCGTCTCAGCTTCAAGACCGTCGAGTCGGTGAATGGAACTGAGGTAACGATGCAGTTTGATGGGAAAATTCAGGAGGATGCGATCGCTGGTAGTGTCGATTTGGGTGGCAATGAAGCACAGCGCCGCGATTGGGTAGCCAAGCGTCAATCATAGAGGCGATTTTTAGTTCAATGCGTCAACCTGTAGGTGTTGAAATTCACCAAAGCTAAAAAATCGCTGAATCCTTCTGTGTGTAAGGATTTAACTGATGCAATCTAATTTTACGGTTGACGCATCTGCTGTATTGCTGTCGTACCAAGCTTTTCACACGTTTTCACTAAATGAGACTCTTGCCTAATCCGCGCCAGGATGATAAGATTCCACAGGTTGACGCAATTGCACCTCGAAAACTACATACAGTAAGCCTTTCAGATATCAGCA # Right flank : CATATTTAACCAGTCTTTAACAGACGCGGTAATGGGACGGAAAACTCTTAAATCCCTGTCAAGTTGGGTGTCCTAACGATCGCTCACGTCAATTATCCGGGTCTTGATAAAATTCTTGTAGCGCTTGTTGTTGAGTGCGACGGGAAGGACGACGATATTTTTTAGTGTTCAGCCTGGGTTCGTATTGGTTTTGCCCTTTGCCTTTGGTTTTCTCCTTCATCGCGGCATCGGGATCGGATTGTTGGTGGAGATGTTCGCTGCGAGCGATCGCATCTTCCAAAAAACCTAGATAATGCTCGTAACGCTCCCAATCTCCCCTAACTGCACAATTTGGCTCATCGCGATGCAGACAGTCGCTAAATTGACATCTTCCCACTTCTAGCCGCTTCTGCGCTTCGGGAAAATACTCGACTAACTCCTCAGGCACACAGTCCAAGTCTGGCTGATTGAAGCCTGGAGTATCGGCCAGCAGTCCACCAGTCGGCAGTTCAAACAGTTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGGAAAACTCCTAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 292766-294446 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOK010000069.1 Trichocoleus sp. FACHB-90 contig69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 292766 37 100.0 32 ..................................... GGCATACTCGCAGTTTACAAACTCCGATGTAT 292835 37 100.0 39 ..................................... CCGTTTTACCAACGCCACCCATGCCTGCGATCGCAGCAA 292911 37 100.0 35 ..................................... AAGGCGAAGTGGCAGGCTTTGGTTCTTCCCGGACG 292983 37 100.0 35 ..................................... CAGCGCTTCCAGGTGGGAACTGGTGGCAGCGCTTC 293055 37 100.0 36 ..................................... CGTACTGGTTTGACCAGATGCGGCTCACAATCTGGG 293128 37 100.0 34 ..................................... TCAAAGTCTTGGCGCAATTGCACCCGGCTCACTC 293199 37 100.0 33 ..................................... GGGAGAGCGACGGGACACGGGCATGGACATGGA 293269 37 100.0 35 ..................................... CAAGGTTCAGGTATTGCTTCGGGTGTAATCGTCAG 293341 37 100.0 33 ..................................... GAGCAATTTATTCTTTCCACTGAACAGCTCTTG 293411 37 100.0 34 ..................................... CTAGCTTTTCGGCAACTTCCAGCGACGGGCTAAC 293482 37 100.0 34 ..................................... AATGCCACTTAATAACGATGTTTTGATTCCTGCG 293553 37 100.0 34 ..................................... GGTATGACTCACTTTGACTGGATTAAATATGAAC 293624 37 100.0 33 ..................................... TCAGATCCAAACGTTGACCCTAGACCGTACTAT 293694 37 100.0 32 ..................................... CTGCCATCAACTATCTGATATTCTTCTGTAGG 293763 37 97.3 34 C.................................... TTAATACATTATTGGCGGCATTTCCAAGAGGGAT 293834 37 100.0 35 ..................................... TCTTTGGATTCTTCCTCTTGTTTATTGATCTTGCT 293906 37 100.0 35 ..................................... GTAACATGGAATCATAGAGTTAGTTAAGGGGTTTT 293978 37 100.0 34 ..................................... TTCTAATATGAGTTTCGGCGTGTACCAGTACATC 294049 37 100.0 35 ..................................... CTACTATCGGGAAAAACTACTTAGGTGCGGATCGC 294121 37 100.0 33 ..................................... AACCATAACGCCGTACAGGTTTACGCCATACTC 294191 37 97.3 37 ............T........................ TGCACACCCTGAATCCTTAGCCAAGTTCCGGTCTGGT 294265 37 97.3 33 ............T........................ ATCGCGGTATCAATGTCTGCCATCGCCGTGGCG 294335 37 100.0 34 ..................................... ATCGATAAATTAATTAAAGAGATTGACGCTGCTA 294406 37 78.4 0 ...A........T.......GGGGT...C........ | TAAT [294423] ========== ====== ====== ====== ===================================== ======================================= ================== 24 37 98.8 34 GTCGGAAAACTCCATAATCCCTATCAGGGATTGAAAC # Left flank : TCTGAGGACAGTCGTCGCACTAAGATTCATAAGATTCTCAAGTCTTATGGACAGTGGATGCAGTATTCTGTGTTTGAGTGCGACTTGACTACTACGCAGTATGCTAAATTGCGATCGCGTCTGGCGAAGATGATTAAGCCAGAGCAAGACAGCATTCGCTTTTATTTCCTCTGGGGTTGCTGTCAGCCGAAGATTGAGCGCATCGGCGGCGAAATGCCAATGGATACTACTGTGTTTTTTGCTTGATGCTTGCGTCAACCAGTAGGTGTTTTTTTGAGGGGTTCGATTTTTTTGGCTGAAACGTTTATCTCGTCTAGATTTGAATGCGATCGCTCCCTATCAGAGGTTGACGCAAGCTCTGTAACCTTTATGGGCAAGGAGTTTCAGAGCTTTTTTAAGAATCACCATTTGACAAGTCGATTTCTGAAATGGTACATTGGCTCTAAATTTACGCAAACCAACCTTGAAAACTACATATATCAAGGCTTTCAGACCCCGGC # Right flank : CTTGATTTCAATTCACATCTTGCACTATTCTCAATAAGTTGCAAACTCCGCTAGAGATTTTAAATAACTATCACCAAGTATTTTAAAAGGCGCGATCGCATTTTCAGCTAATCGCACCTTTCGGACTATTCCACTGTCACCGATTTTGCCAAATTCCTTGGCTGATCTACATCCAAGCCGCGACGCGCTGCAATGTGATAAGCCAATAACTGCAAGGGAATCACCGTCAAAATCGGCGAAAGCAACTCTTCCACAGCCGGAACAGGTAACAAATCGTCAAAAGTTTCCGCCGCCTCTGGGTCATTCATCGGTGTCACACCAATCAAACGGGAATCCCGCGCCTTAGCTTCTTGGGCGTTCGAGAGAACCTTTTCGTACACATTACCCGGCATAGCGATCGCAACCACAGGAACTTTAGCATCCAACAGCGCAATCGGCCCGTGCTTCATCTCCCCAGCCGGATAACCTTCCGCGTGGATATAGCTAATTTCCTTCAGTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAAACTCCATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA //